Wall clock time and date at job start Tue Mar 31 2020 22:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.52269 * 2 1 4 4 C 1.53047 * 109.49626 * 120.07665 * 2 1 3 5 5 C 1.53044 * 109.53627 * 58.59106 * 4 2 1 6 6 C 1.52755 * 109.38533 * 61.23830 * 5 4 2 7 7 N 1.46937 * 109.00957 * 305.58919 * 6 5 4 8 8 C 1.34769 * 120.62847 * 233.58450 * 7 6 5 9 9 O 1.21283 * 119.99605 * 174.64686 * 8 7 6 10 10 C 1.50702 * 120.00399 * 354.64382 * 8 7 6 11 11 N 1.46502 * 109.47174 * 180.02562 * 10 8 7 12 12 C 1.45749 * 117.94495 * 269.73692 * 11 10 8 13 13 C 1.53106 * 110.38460 * 160.74389 * 12 11 10 14 14 C 1.53347 * 108.52560 * 51.11635 * 13 12 11 15 15 C 1.53067 * 108.42456 * 292.31066 * 14 13 12 16 16 C 1.33351 * 117.94448 * 90.00228 * 11 10 8 17 17 O 1.21285 * 118.24431 * 2.19970 * 16 11 10 18 18 C 1.46920 * 118.73504 * 53.30836 * 7 6 5 19 19 H 1.09000 * 109.59408 * 66.57394 * 18 7 6 20 20 C 1.53003 * 109.58552 * 186.85561 * 18 7 6 21 21 N 1.46497 * 109.47291 * 180.83608 * 20 18 7 22 22 C 1.36936 * 120.00061 * 185.44690 * 21 20 18 23 23 H 1.08003 * 119.99765 * 0.02562 * 22 21 20 24 24 C 1.38813 * 120.00108 * 179.97438 * 22 21 20 25 25 N 1.31622 * 119.99815 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00018 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47391 * 60.00532 * 26 24 22 28 28 H 1.48497 * 109.47132 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.47444 * 300.00417 * 26 24 22 30 30 H 1.09006 * 109.47132 * 180.08146 * 1 2 3 31 31 H 1.08998 * 109.47652 * 300.08524 * 1 2 3 32 32 H 1.09007 * 109.47341 * 60.08778 * 1 2 3 33 33 H 1.09000 * 109.46062 * 178.60947 * 4 2 1 34 34 H 1.09005 * 109.45939 * 298.58337 * 4 2 1 35 35 H 1.08996 * 109.49419 * 181.31926 * 5 4 2 36 36 H 1.09007 * 109.49521 * 301.37869 * 5 4 2 37 37 H 1.08992 * 109.51160 * 185.70590 * 6 5 4 38 38 H 1.09001 * 109.43173 * 65.42048 * 6 5 4 39 39 H 1.09003 * 109.46650 * 59.99942 * 10 8 7 40 40 H 1.09000 * 109.47280 * 300.00476 * 10 8 7 41 41 H 1.08992 * 109.30447 * 281.24074 * 12 11 10 42 42 H 1.09005 * 109.30207 * 40.61936 * 12 11 10 43 43 H 1.09000 * 109.80534 * 291.33085 * 13 12 11 44 44 H 1.09000 * 109.67704 * 170.82705 * 13 12 11 45 45 H 1.09000 * 109.67179 * 172.57253 * 14 13 12 46 46 H 1.08998 * 109.70446 * 52.06025 * 14 13 12 47 47 H 1.09002 * 109.39734 * 288.76731 * 15 14 13 48 48 H 1.09002 * 109.40393 * 169.03092 * 15 14 13 49 49 H 1.08992 * 109.47042 * 300.83871 * 20 18 7 50 50 H 1.09004 * 109.46678 * 60.84036 * 20 18 7 51 51 H 0.96998 * 120.00164 * 5.44807 * 21 20 18 52 52 H 0.97001 * 119.99706 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0407 -0.7230 1.2485 5 6 1.5030 -2.1558 1.2661 6 6 2.0091 -2.9025 0.0334 7 7 1.6516 -2.1382 -1.1695 8 6 0.9741 -2.7219 -2.1778 9 8 0.6001 -2.0580 -3.1213 10 6 0.6812 -4.1995 -2.1328 11 7 -0.0599 -4.5873 -3.3356 12 6 -1.5157 -4.5352 -3.2872 13 6 -2.0954 -4.4994 -4.7039 14 6 -1.4766 -5.6459 -5.5126 15 6 0.0110 -5.3474 -5.7150 16 6 0.6396 -4.9709 -4.4041 17 8 1.8480 -5.0178 -4.3125 18 6 2.0413 -0.7239 -1.2495 19 1 3.1274 -0.6463 -1.3004 20 6 1.4230 -0.0913 -2.4979 21 7 1.8294 1.3135 -2.5859 22 6 1.3070 2.1174 -3.5636 23 1 0.5951 1.7159 -4.2696 24 6 1.6917 3.4486 -3.6467 25 7 2.5589 3.9379 -2.7859 26 14 0.9786 4.5454 -4.9800 27 1 -0.4978 4.6073 -4.8331 28 1 1.5467 5.9116 -4.8535 29 1 1.3203 3.9893 -6.3139 30 1 -0.3634 -1.0277 0.0015 31 1 -0.3634 0.5151 0.8892 32 1 -0.3634 0.5125 -0.8908 33 1 3.1304 -0.7443 1.2355 34 1 1.6984 -0.1958 2.1390 35 1 1.8480 -2.6627 2.1672 36 1 0.4131 -2.1355 1.2547 37 1 1.5473 -3.8889 -0.0098 38 1 3.0926 -3.0062 0.0917 39 1 0.0841 -4.4248 -1.2492 40 1 1.6184 -4.7545 -2.0892 41 1 -1.8905 -5.4141 -2.7629 42 1 -1.8265 -3.6391 -2.7500 43 1 -1.8557 -3.5472 -5.1770 44 1 -3.1773 -4.6245 -4.6610 45 1 -1.9711 -5.7204 -6.4812 46 1 -1.5920 -6.5834 -4.9687 47 1 0.1222 -4.5234 -6.4198 48 1 0.5071 -6.2324 -6.1134 49 1 1.7665 -0.6251 -3.3838 50 1 0.3364 -0.1519 -2.4356 51 1 2.4685 1.6741 -1.9516 52 1 2.8280 4.8680 -2.8442 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319851074.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:03 Heat of formation + Delta-G solvation = -41.172386 kcal Electronic energy + Delta-G solvation = -31813.237071 eV Core-core repulsion = 27813.519584 eV Total energy + Delta-G solvation = -3999.717487 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.00125 -40.02851 -37.49230 -36.52883 -34.91980 -34.05695 -33.26302 -32.06073 -30.03396 -29.86321 -28.51815 -26.65240 -25.87785 -24.60753 -24.02280 -23.03046 -22.44413 -21.03276 -20.19270 -18.70971 -18.25771 -17.15765 -16.85051 -16.77025 -16.61298 -15.69964 -15.45287 -15.02521 -14.85626 -14.47112 -14.35073 -14.18110 -14.00167 -13.75278 -13.66167 -13.37767 -13.23858 -13.09358 -13.00073 -12.75987 -12.19013 -12.11148 -11.90994 -11.79873 -11.49387 -11.33379 -11.30501 -11.19101 -11.17017 -10.90652 -10.80119 -10.70369 -10.53902 -10.28463 -10.09855 -9.95267 -9.74973 -9.58671 -9.19589 -8.74852 -8.46777 -8.21118 -6.69800 -5.61916 -2.87512 2.50216 2.80173 2.85956 3.26789 3.53510 3.56930 3.59137 4.38468 4.48386 4.52036 4.56453 4.59171 4.73118 4.75088 4.88890 4.97572 5.01859 5.11717 5.21059 5.23308 5.24296 5.35049 5.38393 5.40478 5.49282 5.58284 5.59701 5.65221 5.70057 5.72282 5.77828 5.84931 5.96865 5.98498 6.02881 6.04828 6.08488 6.17986 6.31578 6.35289 6.43624 6.50389 6.76888 6.87918 7.20433 7.32919 7.39738 7.64835 7.87108 8.09818 8.45438 8.60326 9.68492 10.28842 10.63728 11.61701 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009492 B = 0.004139 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2949.117634 B = 6763.441437 C = 8818.450361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.098 4.098 3 H 0.091 0.909 4 C -0.116 4.116 5 C -0.136 4.136 6 C 0.109 3.891 7 N -0.603 5.603 8 C 0.492 3.508 9 O -0.506 6.506 10 C 0.088 3.912 11 N -0.585 5.585 12 C 0.117 3.883 13 C -0.137 4.137 14 C -0.122 4.122 15 C -0.133 4.133 16 C 0.524 3.476 17 O -0.553 6.553 18 C 0.144 3.856 19 H 0.068 0.932 20 C 0.164 3.836 21 N -0.737 5.737 22 C -0.222 4.222 23 H 0.068 0.932 24 C -0.019 4.019 25 N -0.939 5.939 26 Si 0.904 3.096 27 H -0.288 1.288 28 H -0.292 1.292 29 H -0.288 1.288 30 H 0.045 0.955 31 H 0.044 0.956 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.101 0.899 40 H 0.113 0.887 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.076 0.924 46 H 0.069 0.931 47 H 0.102 0.898 48 H 0.098 0.902 49 H 0.040 0.960 50 H 0.041 0.959 51 H 0.378 0.622 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.461 -23.216 6.707 25.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.117 4.117 3 H 0.109 0.891 4 C -0.153 4.153 5 C -0.174 4.174 6 C -0.015 4.015 7 N -0.339 5.339 8 C 0.278 3.722 9 O -0.380 6.380 10 C -0.039 4.039 11 N -0.317 5.317 12 C -0.005 4.005 13 C -0.175 4.175 14 C -0.160 4.160 15 C -0.172 4.172 16 C 0.313 3.687 17 O -0.431 6.431 18 C 0.041 3.959 19 H 0.086 0.914 20 C 0.038 3.962 21 N -0.383 5.383 22 C -0.353 4.353 23 H 0.086 0.914 24 C -0.214 4.214 25 N -0.589 5.589 26 Si 0.736 3.264 27 H -0.215 1.215 28 H -0.218 1.218 29 H -0.215 1.215 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.119 0.881 40 H 0.131 0.869 41 H 0.083 0.917 42 H 0.095 0.905 43 H 0.098 0.902 44 H 0.102 0.898 45 H 0.095 0.905 46 H 0.087 0.913 47 H 0.120 0.880 48 H 0.116 0.884 49 H 0.057 0.943 50 H 0.059 0.941 51 H 0.211 0.789 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -8.161 -22.863 6.045 25.018 hybrid contribution -0.097 0.915 -0.303 0.969 sum -8.259 -21.948 5.742 24.143 Atomic orbital electron populations 1.21795 0.95044 1.00631 1.02108 1.21438 0.96729 1.00276 0.93266 0.89090 1.21581 1.00412 0.94979 0.98373 1.21881 1.01683 0.96771 0.97067 1.21613 1.00545 0.94535 0.84766 1.48090 1.56584 1.11611 1.17598 1.20968 0.78649 0.89840 0.82737 1.90833 1.50112 1.63250 1.33756 1.21435 0.99912 0.93917 0.88645 1.46878 1.06822 1.65311 1.12721 1.21435 0.78714 1.02023 0.98370 1.21908 1.00668 1.00157 0.94741 1.21656 0.94441 0.98661 1.01215 1.21638 0.96453 1.04246 0.94891 1.20129 0.87228 0.76067 0.85319 1.90720 1.14682 1.54210 1.83472 1.21607 0.98635 0.78395 0.97242 0.91428 1.21312 0.97411 0.84898 0.92599 1.42557 1.52937 1.05711 1.37046 1.19162 1.18910 0.91015 1.06255 0.91448 1.24676 1.00242 0.97083 0.99384 1.69648 1.36610 1.14248 1.38381 0.86291 0.78371 0.79940 0.81783 1.21485 1.21830 1.21462 0.93650 0.93648 0.91162 0.91974 0.91870 0.91125 0.91189 0.90383 0.91339 0.88097 0.86891 0.91708 0.90471 0.90191 0.89802 0.90540 0.91265 0.87972 0.88355 0.94270 0.94139 0.78908 0.93754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 8.20 37.15 0.30 -1.91 16 2 C -0.10 -1.57 2.57 -90.50 -0.23 -1.80 16 3 H 0.09 1.71 7.25 -51.93 -0.38 1.34 16 4 C -0.12 -1.39 5.43 -26.68 -0.14 -1.53 16 5 C -0.14 -1.29 5.72 -26.83 -0.15 -1.44 16 6 C 0.11 1.09 6.30 -3.93 -0.02 1.07 16 7 N -0.60 -8.77 2.42 -165.48 -0.40 -9.17 16 8 C 0.49 7.76 7.66 -10.99 -0.08 7.68 16 9 O -0.51 -10.19 11.83 5.55 0.07 -10.13 16 10 C 0.09 1.02 4.11 -5.19 -0.02 1.00 16 11 N -0.59 -6.96 2.30 -176.22 -0.41 -7.36 16 12 C 0.12 1.02 6.33 -4.39 -0.03 0.99 16 13 C -0.14 -1.07 6.03 -26.50 -0.16 -1.23 16 14 C -0.12 -0.86 6.03 -26.52 -0.16 -1.02 16 15 C -0.13 -1.32 6.03 -28.10 -0.17 -1.49 16 16 C 0.52 7.23 7.44 -11.87 -0.09 7.14 16 17 O -0.55 -9.87 16.18 5.55 0.09 -9.78 16 18 C 0.14 2.58 2.74 -67.60 -0.18 2.39 16 19 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 20 C 0.16 3.77 3.64 -4.04 -0.01 3.75 16 21 N -0.74 -19.86 5.28 -59.91 -0.32 -20.17 16 22 C -0.22 -6.62 9.99 -15.06 -0.15 -6.77 16 23 H 0.07 2.01 7.83 -52.48 -0.41 1.60 16 24 C -0.02 -0.57 5.50 -17.43 -0.10 -0.67 16 25 N -0.94 -29.36 13.06 55.49 0.72 -28.63 16 26 Si 0.90 23.60 29.55 -169.99 -5.02 18.58 16 27 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 28 H -0.29 -7.61 7.11 56.52 0.40 -7.20 16 29 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 30 H 0.04 0.65 5.97 -51.93 -0.31 0.34 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.07 1.37 6.32 -51.93 -0.33 1.04 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.68 6.33 -51.92 -0.33 0.35 16 37 H 0.08 0.57 5.96 -51.93 -0.31 0.26 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.10 0.79 7.34 -51.93 -0.38 0.41 16 40 H 0.11 1.35 7.11 -51.93 -0.37 0.98 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 43 H 0.08 0.81 8.12 -51.93 -0.42 0.38 16 44 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 47 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 48 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 49 H 0.04 1.03 6.37 -51.93 -0.33 0.70 16 50 H 0.04 0.98 5.23 -51.93 -0.27 0.71 16 51 H 0.38 10.46 6.85 -40.82 -0.28 10.18 16 52 H 0.25 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 390.45 15.07 5.88 5.88 Total: -1.00 -37.24 390.45 -9.54 -46.78 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -8.75 Total: 7.84 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: -1.41 Total: 6.17 kcal Atomic # 7 Polarization: -64.94 SS G_CDS: -0.40 Total: -65.34 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: 0.16 Total: -19.91 kcal Atomic # 14 Polarization: 23.60 SS G_CDS: -5.02 Total: 18.58 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -37.24 -9.54 -46.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319851074.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.605 kcal (2) G-P(sol) polarization free energy of solvation -37.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds