Wall clock time and date at job start Tue Mar 31 2020 22:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.52269 * 2 1 4 4 C 1.53047 * 109.49626 * 120.07665 * 2 1 3 5 5 C 1.53044 * 109.53627 * 58.59106 * 4 2 1 6 6 C 1.52755 * 109.38533 * 61.23830 * 5 4 2 7 7 N 1.46937 * 109.00957 * 305.58919 * 6 5 4 8 8 C 1.34769 * 120.62847 * 233.58450 * 7 6 5 9 9 O 1.21283 * 119.99605 * 174.64686 * 8 7 6 10 10 C 1.50702 * 120.00399 * 354.64382 * 8 7 6 11 11 N 1.46502 * 109.47174 * 180.02562 * 10 8 7 12 12 C 1.45749 * 117.94495 * 269.73692 * 11 10 8 13 13 C 1.53106 * 110.38460 * 160.74389 * 12 11 10 14 14 C 1.53347 * 108.52560 * 51.11635 * 13 12 11 15 15 C 1.53067 * 108.42456 * 292.31066 * 14 13 12 16 16 C 1.33351 * 117.94448 * 90.00228 * 11 10 8 17 17 O 1.21285 * 118.24431 * 2.19970 * 16 11 10 18 18 C 1.46920 * 118.73504 * 53.30836 * 7 6 5 19 19 H 1.09000 * 109.59408 * 66.57394 * 18 7 6 20 20 C 1.53003 * 109.58552 * 186.85561 * 18 7 6 21 21 N 1.46497 * 109.47291 * 180.83608 * 20 18 7 22 22 C 1.36936 * 120.00061 * 185.44690 * 21 20 18 23 23 H 1.08003 * 119.99765 * 0.02562 * 22 21 20 24 24 C 1.38813 * 120.00108 * 179.97438 * 22 21 20 25 25 N 1.31622 * 119.99815 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00018 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47391 * 60.00532 * 26 24 22 28 28 H 1.48497 * 109.47132 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.47444 * 300.00417 * 26 24 22 30 30 H 1.09006 * 109.47132 * 180.08146 * 1 2 3 31 31 H 1.08998 * 109.47652 * 300.08524 * 1 2 3 32 32 H 1.09007 * 109.47341 * 60.08778 * 1 2 3 33 33 H 1.09000 * 109.46062 * 178.60947 * 4 2 1 34 34 H 1.09005 * 109.45939 * 298.58337 * 4 2 1 35 35 H 1.08996 * 109.49419 * 181.31926 * 5 4 2 36 36 H 1.09007 * 109.49521 * 301.37869 * 5 4 2 37 37 H 1.08992 * 109.51160 * 185.70590 * 6 5 4 38 38 H 1.09001 * 109.43173 * 65.42048 * 6 5 4 39 39 H 1.09003 * 109.46650 * 59.99942 * 10 8 7 40 40 H 1.09000 * 109.47280 * 300.00476 * 10 8 7 41 41 H 1.08992 * 109.30447 * 281.24074 * 12 11 10 42 42 H 1.09005 * 109.30207 * 40.61936 * 12 11 10 43 43 H 1.09000 * 109.80534 * 291.33085 * 13 12 11 44 44 H 1.09000 * 109.67704 * 170.82705 * 13 12 11 45 45 H 1.09000 * 109.67179 * 172.57253 * 14 13 12 46 46 H 1.08998 * 109.70446 * 52.06025 * 14 13 12 47 47 H 1.09002 * 109.39734 * 288.76731 * 15 14 13 48 48 H 1.09002 * 109.40393 * 169.03092 * 15 14 13 49 49 H 1.08992 * 109.47042 * 300.83871 * 20 18 7 50 50 H 1.09004 * 109.46678 * 60.84036 * 20 18 7 51 51 H 0.96998 * 120.00164 * 5.44807 * 21 20 18 52 52 H 0.97001 * 119.99706 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0407 -0.7230 1.2485 5 6 1.5030 -2.1558 1.2661 6 6 2.0091 -2.9025 0.0334 7 7 1.6516 -2.1382 -1.1695 8 6 0.9741 -2.7219 -2.1778 9 8 0.6001 -2.0580 -3.1213 10 6 0.6812 -4.1995 -2.1328 11 7 -0.0599 -4.5873 -3.3356 12 6 -1.5157 -4.5352 -3.2872 13 6 -2.0954 -4.4994 -4.7039 14 6 -1.4766 -5.6459 -5.5126 15 6 0.0110 -5.3474 -5.7150 16 6 0.6396 -4.9709 -4.4041 17 8 1.8480 -5.0178 -4.3125 18 6 2.0413 -0.7239 -1.2495 19 1 3.1274 -0.6463 -1.3004 20 6 1.4230 -0.0913 -2.4979 21 7 1.8294 1.3135 -2.5859 22 6 1.3070 2.1174 -3.5636 23 1 0.5951 1.7159 -4.2696 24 6 1.6917 3.4486 -3.6467 25 7 2.5589 3.9379 -2.7859 26 14 0.9786 4.5454 -4.9800 27 1 -0.4978 4.6073 -4.8331 28 1 1.5467 5.9116 -4.8535 29 1 1.3203 3.9893 -6.3139 30 1 -0.3634 -1.0277 0.0015 31 1 -0.3634 0.5151 0.8892 32 1 -0.3634 0.5125 -0.8908 33 1 3.1304 -0.7443 1.2355 34 1 1.6984 -0.1958 2.1390 35 1 1.8480 -2.6627 2.1672 36 1 0.4131 -2.1355 1.2547 37 1 1.5473 -3.8889 -0.0098 38 1 3.0926 -3.0062 0.0917 39 1 0.0841 -4.4248 -1.2492 40 1 1.6184 -4.7545 -2.0892 41 1 -1.8905 -5.4141 -2.7629 42 1 -1.8265 -3.6391 -2.7500 43 1 -1.8557 -3.5472 -5.1770 44 1 -3.1773 -4.6245 -4.6610 45 1 -1.9711 -5.7204 -6.4812 46 1 -1.5920 -6.5834 -4.9687 47 1 0.1222 -4.5234 -6.4198 48 1 0.5071 -6.2324 -6.1134 49 1 1.7665 -0.6251 -3.3838 50 1 0.3364 -0.1519 -2.4356 51 1 2.4685 1.6741 -1.9516 52 1 2.8280 4.8680 -2.8442 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319851074.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:59 Heat of formation + Delta-G solvation = -66.727368 kcal Electronic energy + Delta-G solvation = -31814.345218 eV Core-core repulsion = 27813.519584 eV Total energy + Delta-G solvation = -4000.825634 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.11649 -41.14009 -38.74483 -37.46746 -36.68451 -35.13791 -34.50085 -33.75066 -31.80893 -30.66829 -29.68317 -27.97944 -27.30027 -25.67686 -25.18610 -24.73053 -23.35251 -22.44610 -21.33331 -19.61543 -19.51020 -19.11601 -18.12389 -17.80417 -17.58615 -16.94587 -16.71376 -16.44520 -16.14545 -15.93650 -15.36086 -15.20745 -15.18564 -15.07737 -14.85023 -14.64867 -14.49179 -14.28375 -14.17514 -13.98111 -13.56669 -13.36821 -13.06783 -13.05124 -12.79730 -12.73302 -12.60078 -12.44902 -12.23471 -12.17269 -12.02580 -11.96091 -11.85815 -11.81592 -11.78556 -11.35781 -11.23054 -10.96116 -10.75338 -10.44591 -9.65879 -9.52347 -8.95048 -7.97509 -5.25113 1.40139 1.43847 1.44765 1.51253 1.65578 1.88525 2.17455 2.54335 3.34764 3.49127 3.58952 3.79185 3.83825 3.84773 3.90568 3.91069 3.92724 4.10187 4.14846 4.15945 4.22925 4.34974 4.42158 4.50699 4.53016 4.55675 4.62229 4.63667 4.70651 4.79867 4.83519 4.88546 4.93556 4.95443 5.02744 5.04791 5.13508 5.13926 5.21406 5.26869 5.31411 5.34833 5.38060 5.40227 5.43096 5.56562 5.71853 6.24769 6.39688 6.48813 7.08413 7.25126 7.30694 8.06245 8.33268 9.25936 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009492 B = 0.004139 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2949.117634 B = 6763.441437 C = 8818.450361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.093 4.093 3 H 0.053 0.947 4 C -0.111 4.111 5 C -0.127 4.127 6 C 0.099 3.901 7 N -0.600 5.600 8 C 0.482 3.518 9 O -0.563 6.563 10 C 0.094 3.906 11 N -0.585 5.585 12 C 0.110 3.890 13 C -0.137 4.137 14 C -0.111 4.111 15 C -0.133 4.133 16 C 0.510 3.490 17 O -0.605 6.605 18 C 0.152 3.848 19 H 0.053 0.947 20 C 0.181 3.819 21 N -0.743 5.743 22 C -0.241 4.241 23 H 0.058 0.942 24 C -0.071 4.071 25 N -0.967 5.967 26 Si 0.973 3.027 27 H -0.277 1.277 28 H -0.286 1.286 29 H -0.283 1.283 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.023 0.977 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.109 0.891 36 H 0.074 0.926 37 H 0.117 0.883 38 H 0.076 0.924 39 H 0.151 0.849 40 H 0.114 0.886 41 H 0.105 0.895 42 H 0.067 0.933 43 H 0.046 0.954 44 H 0.113 0.887 45 H 0.094 0.906 46 H 0.090 0.910 47 H 0.088 0.912 48 H 0.110 0.890 49 H 0.002 0.998 50 H 0.028 0.972 51 H 0.371 0.629 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.293 -25.890 8.613 29.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.113 4.113 3 H 0.072 0.928 4 C -0.148 4.148 5 C -0.165 4.165 6 C -0.022 4.022 7 N -0.335 5.335 8 C 0.270 3.730 9 O -0.441 6.441 10 C -0.033 4.033 11 N -0.315 5.315 12 C -0.011 4.011 13 C -0.175 4.175 14 C -0.148 4.148 15 C -0.173 4.173 16 C 0.301 3.699 17 O -0.488 6.488 18 C 0.048 3.952 19 H 0.071 0.929 20 C 0.056 3.944 21 N -0.388 5.388 22 C -0.373 4.373 23 H 0.076 0.924 24 C -0.263 4.263 25 N -0.618 5.618 26 Si 0.801 3.199 27 H -0.204 1.204 28 H -0.212 1.212 29 H -0.210 1.210 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.042 0.958 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.127 0.873 36 H 0.092 0.908 37 H 0.135 0.865 38 H 0.095 0.905 39 H 0.169 0.831 40 H 0.132 0.868 41 H 0.123 0.877 42 H 0.085 0.915 43 H 0.065 0.935 44 H 0.131 0.869 45 H 0.113 0.887 46 H 0.109 0.891 47 H 0.107 0.893 48 H 0.128 0.872 49 H 0.020 0.980 50 H 0.045 0.955 51 H 0.203 0.797 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -10.033 -25.584 7.998 28.621 hybrid contribution 0.482 1.747 -0.899 2.023 sum -9.551 -23.836 7.099 26.642 Atomic orbital electron populations 1.21683 0.94834 1.01449 1.00556 1.21336 0.96765 0.98616 0.94543 0.92843 1.21557 1.00617 0.96613 0.96049 1.21880 1.01808 0.94714 0.98097 1.22058 1.01666 0.95669 0.82800 1.48199 1.55883 1.10168 1.19207 1.21885 0.77673 0.91597 0.81884 1.90814 1.52556 1.64887 1.35803 1.21557 1.01125 0.90097 0.90495 1.47093 1.08248 1.63807 1.12355 1.21738 0.76737 1.03350 0.99271 1.21934 1.02476 0.98902 0.94192 1.21645 0.91799 0.98991 1.02413 1.21693 0.98843 1.04127 0.92612 1.20856 0.86844 0.75517 0.86707 1.90681 1.16913 1.56718 1.84459 1.21211 0.97315 0.80947 0.95716 0.92850 1.21086 0.96637 0.82741 0.93954 1.42698 1.52625 1.07155 1.36304 1.19407 1.19066 0.91970 1.06855 0.92394 1.25502 1.00772 0.98252 1.01818 1.69802 1.37631 1.14452 1.39889 0.85231 0.78011 0.77833 0.78814 1.20357 1.21196 1.20981 0.91581 0.91946 0.95798 0.91740 0.90479 0.87292 0.90783 0.86543 0.90543 0.83119 0.86812 0.87658 0.91472 0.93542 0.86894 0.88706 0.89131 0.89346 0.87205 0.98016 0.95457 0.79699 0.93862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.12 8.20 71.98 0.59 -3.53 16 2 C -0.09 -3.05 2.57 -10.72 -0.03 -3.08 16 3 H 0.05 2.14 7.25 -2.38 -0.02 2.12 16 4 C -0.11 -2.42 5.43 30.62 0.17 -2.25 16 5 C -0.13 -1.86 5.72 30.53 0.17 -1.69 16 6 C 0.10 1.66 6.30 86.21 0.54 2.20 16 7 N -0.60 -17.22 2.42 -795.86 -1.92 -19.15 16 8 C 0.48 15.33 7.66 87.66 0.67 16.00 16 9 O -0.56 -24.18 11.83 -3.04 -0.04 -24.22 16 10 C 0.09 2.00 4.11 85.63 0.35 2.36 16 11 N -0.58 -13.26 2.30 -830.63 -1.91 -15.17 16 12 C 0.11 1.67 6.33 86.56 0.55 2.22 16 13 C -0.14 -1.93 6.03 30.75 0.19 -1.74 16 14 C -0.11 -1.30 6.03 30.73 0.19 -1.12 16 15 C -0.13 -2.63 6.03 29.70 0.18 -2.45 16 16 C 0.51 14.21 7.44 87.71 0.65 14.86 16 17 O -0.61 -22.39 16.18 -3.04 -0.05 -22.44 16 18 C 0.15 5.72 2.74 44.98 0.12 5.84 16 19 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 20 C 0.18 9.01 3.64 86.38 0.31 9.33 16 21 N -0.74 -42.89 5.28 -343.45 -1.81 -44.71 16 22 C -0.24 -15.14 9.99 84.03 0.84 -14.30 16 23 H 0.06 3.67 7.83 -2.91 -0.02 3.64 16 24 C -0.07 -4.41 5.50 84.86 0.47 -3.95 16 25 N -0.97 -62.28 13.06 21.65 0.28 -61.99 16 26 Si 0.97 49.70 29.55 68.60 2.03 51.73 16 27 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 28 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 29 H -0.28 -14.21 7.11 99.48 0.71 -13.50 16 30 H 0.07 1.81 5.97 -2.38 -0.01 1.80 16 31 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.02 0.97 6.32 -2.38 -0.02 0.95 16 33 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 35 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.07 1.08 6.33 -2.38 -0.02 1.07 16 37 H 0.12 1.11 5.96 -2.39 -0.01 1.09 16 38 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.15 1.67 7.34 -2.39 -0.02 1.65 16 40 H 0.11 2.50 7.11 -2.39 -0.02 2.49 16 41 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.07 1.18 8.10 -2.38 -0.02 1.16 16 43 H 0.05 0.96 8.12 -2.39 -0.02 0.95 16 44 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.09 0.74 8.12 -2.39 -0.02 0.72 16 47 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 48 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 49 H 0.00 0.12 6.37 -2.39 -0.02 0.11 16 50 H 0.03 1.44 5.23 -2.38 -0.01 1.43 16 51 H 0.37 21.99 6.85 -92.71 -0.64 21.36 16 52 H 0.25 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -89.56 390.45 2.82 -86.74 By element: Atomic # 1 Polarization: 30.23 SS G_CDS: 0.28 Total: 30.51 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: 5.96 Total: 18.71 kcal Atomic # 7 Polarization: -135.65 SS G_CDS: -5.37 Total: -141.02 kcal Atomic # 8 Polarization: -46.58 SS G_CDS: -0.09 Total: -46.66 kcal Atomic # 14 Polarization: 49.70 SS G_CDS: 2.03 Total: 51.73 kcal Total: -89.56 2.82 -86.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319851074.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.008 kcal (2) G-P(sol) polarization free energy of solvation -89.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds