Wall clock time and date at job start Tue Mar 31 2020 20:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47080 * 2 1 4 4 C 1.52999 * 109.47194 * 239.99332 * 2 1 3 5 5 C 1.53001 * 109.47060 * 180.02562 * 4 2 1 6 6 C 1.52995 * 109.47325 * 59.99660 * 5 4 2 7 7 C 1.52996 * 109.47565 * 300.00458 * 6 5 4 8 8 C 1.53000 * 109.46689 * 119.99531 * 2 1 3 9 9 H 1.09004 * 109.47574 * 59.99877 * 8 2 1 10 10 C 1.50705 * 109.47573 * 300.00051 * 8 2 1 11 11 O 1.21285 * 119.99408 * 359.97438 * 10 8 2 12 12 N 1.34772 * 120.00442 * 180.02562 * 10 8 2 13 13 C 1.46500 * 120.00015 * 179.97438 * 12 10 8 14 14 C 1.50699 * 109.46915 * 179.97438 * 13 12 10 15 15 C 1.31005 * 119.99776 * 125.00274 * 14 13 12 16 16 C 1.50702 * 119.99932 * 180.27660 * 15 14 13 17 17 N 1.46899 * 109.47025 * 124.72105 * 16 15 14 18 18 C 1.46899 * 110.99934 * 179.97438 * 17 16 15 19 19 C 1.50695 * 109.47442 * 179.97438 * 18 17 16 20 20 O 1.21299 * 119.99991 * 0.02562 * 19 18 17 21 21 N 1.34775 * 120.00471 * 179.97438 * 19 18 17 22 22 C 1.37095 * 120.00404 * 180.02562 * 21 19 18 23 23 H 1.08004 * 119.99646 * 359.97438 * 22 21 19 24 24 C 1.38952 * 119.99901 * 180.02562 * 22 21 19 25 25 N 1.31406 * 120.00202 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99563 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47225 * 60.00122 * 26 24 22 28 28 H 1.48501 * 109.47233 * 179.97438 * 26 24 22 29 29 H 1.48502 * 109.47290 * 299.99794 * 26 24 22 30 30 H 1.09006 * 109.47466 * 300.00598 * 1 2 3 31 31 H 1.09007 * 109.47116 * 60.00524 * 1 2 3 32 32 H 1.09006 * 109.47456 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46922 * 300.00032 * 4 2 1 34 34 H 1.08998 * 109.46829 * 60.00281 * 4 2 1 35 35 H 1.08996 * 109.47160 * 180.02562 * 5 4 2 36 36 H 1.09003 * 109.46389 * 299.99818 * 5 4 2 37 37 H 1.09006 * 109.46731 * 60.00153 * 6 5 4 38 38 H 1.09003 * 109.47262 * 179.97438 * 6 5 4 39 39 H 1.09006 * 109.46847 * 299.99624 * 7 6 5 40 40 H 1.08998 * 109.47064 * 179.97438 * 7 6 5 41 41 H 0.97006 * 119.99902 * 359.97438 * 12 10 8 42 42 H 1.09005 * 109.47251 * 59.99732 * 13 12 10 43 43 H 1.08994 * 109.46778 * 299.99704 * 13 12 10 44 44 H 1.08002 * 120.00511 * 305.00212 * 14 13 12 45 45 H 1.08002 * 119.99708 * 359.97438 * 15 14 13 46 46 H 1.09002 * 109.47005 * 244.72313 * 16 15 14 47 47 H 1.08999 * 109.47073 * 4.72010 * 16 15 14 48 48 H 1.00901 * 111.00139 * 56.04374 * 17 16 15 49 49 H 1.09004 * 109.47505 * 300.00547 * 18 17 16 50 50 H 1.09005 * 109.47204 * 59.99902 * 18 17 16 51 51 H 0.97008 * 119.99552 * 0.02562 * 21 19 18 52 52 H 0.96999 * 119.99855 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5700 -0.7219 -1.2488 6 6 4.0795 -1.4433 0.0005 7 6 3.5695 -0.7220 1.2497 8 6 2.0399 -0.7212 1.2493 9 1 1.6765 -1.7489 1.2495 10 6 1.5375 -0.0107 2.4798 11 8 0.8406 0.9757 2.3684 12 7 1.8634 -0.4708 3.7039 13 6 1.3755 0.2203 4.9000 14 6 1.8776 -0.4902 6.1305 15 6 2.5484 0.1714 7.0409 16 6 3.0559 -0.5404 8.2684 17 7 4.5059 -0.3371 8.3879 18 6 5.0367 -1.0179 9.5765 19 6 6.5234 -0.7879 9.6651 20 8 7.0855 -0.1220 8.8214 21 7 7.2284 -1.3213 10.6824 22 6 8.5808 -1.1117 10.7633 23 1 9.0813 -0.5194 10.0116 24 6 9.3077 -1.6621 11.8119 25 7 8.6989 -2.3840 12.7257 26 14 11.1505 -1.3770 11.9217 27 1 11.4209 0.0796 12.0234 28 1 11.6871 -2.0646 13.1235 29 1 11.8086 -1.9189 10.7057 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 1.6766 -1.7491 -1.2490 34 1 1.6767 -0.2076 -2.1391 35 1 3.9333 -1.2354 -2.1389 36 1 3.9336 0.3057 -1.2487 37 1 3.7158 -2.4709 0.0004 38 1 5.1695 -1.4441 0.0005 39 1 3.9332 0.3056 1.2498 40 1 3.9321 -1.2363 2.1397 41 1 2.4211 -1.2595 3.7930 42 1 0.2854 0.2204 4.9003 43 1 1.7390 1.2478 4.8995 44 1 1.6846 -1.5446 6.2620 45 1 2.7418 1.2257 6.9093 46 1 2.5589 -0.1401 9.1521 47 1 2.8442 -1.6063 8.1840 48 1 4.7332 0.6458 8.4028 49 1 4.5534 -0.6206 10.4690 50 1 4.8387 -2.0872 9.5016 51 1 6.7788 -1.8536 11.3574 52 1 9.2062 -2.7679 13.4579 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321221535.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:44 Heat of formation + Delta-G solvation = -86.040007 kcal Electronic energy + Delta-G solvation = -28004.768285 eV Core-core repulsion = 24003.105192 eV Total energy + Delta-G solvation = -4001.663093 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.55 seconds Orbital eigenvalues (eV) -40.67094 -38.37331 -38.14646 -36.70989 -35.28385 -33.93768 -33.08481 -32.65275 -31.42955 -31.20405 -28.52361 -26.93726 -25.96288 -24.37545 -23.59740 -22.55305 -21.62582 -20.89392 -20.27754 -19.76420 -19.13235 -17.89772 -17.46253 -16.44961 -16.16272 -15.66529 -15.46724 -15.14218 -14.88444 -14.67782 -14.55464 -14.47291 -14.43801 -14.03608 -13.86417 -13.63827 -13.45401 -13.10220 -12.89660 -12.56868 -12.51868 -12.30880 -12.11481 -11.81719 -11.78344 -11.59423 -11.54795 -11.52240 -11.22003 -11.19712 -11.03436 -10.94357 -10.79409 -10.45521 -10.44052 -10.23123 -9.83752 -9.52988 -9.51260 -9.14990 -8.49058 -8.08092 -7.97827 -6.43341 -3.84284 1.83123 2.42327 3.12717 3.19018 3.24812 3.29266 3.88758 4.10492 4.21617 4.29006 4.34028 4.35979 4.64742 4.74532 4.78230 4.82761 4.88849 5.01550 5.03808 5.10281 5.12891 5.16815 5.22381 5.26743 5.35562 5.39176 5.42202 5.46520 5.49209 5.60559 5.63418 5.67098 5.72336 5.73898 5.77009 5.82503 5.90097 5.93688 5.94685 6.07246 6.14316 6.23287 6.29745 6.42227 6.58120 7.14453 7.27744 7.53428 7.59702 8.01812 8.04255 8.59391 9.16023 9.52229 10.03718 10.74261 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015230 B = 0.001603 C = 0.001476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.978170 B =17468.172455 C =18960.789480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.069 4.069 3 H 0.076 0.924 4 C -0.115 4.115 5 C -0.123 4.123 6 C -0.118 4.118 7 C -0.113 4.113 8 C -0.101 4.101 9 H 0.096 0.904 10 C 0.517 3.483 11 O -0.538 6.538 12 N -0.725 5.725 13 C 0.153 3.847 14 C -0.184 4.184 15 C -0.111 4.111 16 C 0.082 3.918 17 N -0.665 5.665 18 C 0.050 3.950 19 C 0.440 3.560 20 O -0.583 6.583 21 N -0.563 5.563 22 C -0.301 4.301 23 H 0.103 0.897 24 C 0.023 3.977 25 N -0.902 5.902 26 Si 0.931 3.069 27 H -0.274 1.274 28 H -0.284 1.284 29 H -0.273 1.273 30 H 0.082 0.918 31 H 0.050 0.950 32 H 0.045 0.955 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.403 0.597 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.116 0.884 45 H 0.112 0.888 46 H 0.039 0.961 47 H 0.077 0.923 48 H 0.350 0.650 49 H 0.044 0.956 50 H 0.086 0.914 51 H 0.392 0.608 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.516 -0.276 -21.401 27.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.088 4.088 3 H 0.094 0.906 4 C -0.152 4.152 5 C -0.160 4.160 6 C -0.155 4.155 7 C -0.151 4.151 8 C -0.122 4.122 9 H 0.114 0.886 10 C 0.303 3.697 11 O -0.415 6.415 12 N -0.377 5.377 13 C 0.030 3.970 14 C -0.203 4.203 15 C -0.130 4.130 16 C -0.047 4.047 17 N -0.297 5.297 18 C -0.083 4.083 19 C 0.225 3.775 20 O -0.468 6.468 21 N -0.200 5.200 22 C -0.430 4.430 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.758 3.242 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.101 0.899 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.238 0.762 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.134 0.866 45 H 0.130 0.870 46 H 0.057 0.943 47 H 0.095 0.905 48 H 0.170 0.830 49 H 0.062 0.938 50 H 0.104 0.896 51 H 0.226 0.774 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.398 0.275 -22.275 28.265 hybrid contribution 0.589 -0.160 1.468 1.590 sum -16.809 0.114 -20.807 26.748 Atomic orbital electron populations 1.22070 0.94759 1.01387 1.03425 1.20895 0.96146 0.99537 0.92232 0.90582 1.21630 0.95437 1.00663 0.97491 1.21573 0.95692 1.00969 0.97795 1.21524 1.00681 0.99303 0.94039 1.21546 0.92643 1.01968 0.98898 1.21407 0.97145 1.00733 0.92964 0.88637 1.20705 0.79829 0.84564 0.84554 1.90633 1.37920 1.26376 1.86596 1.46078 1.53804 1.32406 1.05421 1.20289 0.98975 0.95745 0.82015 1.22740 1.02002 1.00207 0.95338 1.22880 0.94799 0.99848 0.95496 1.21086 0.88702 1.00101 0.94799 1.60130 1.09845 1.18944 1.40827 1.21690 0.95110 1.00153 0.91300 1.19792 0.87978 0.85375 0.84324 1.90527 1.71255 1.43509 1.41470 1.41854 1.08461 1.46333 1.23304 1.19662 0.82763 1.30789 1.09819 0.87959 1.25263 1.00657 0.96452 0.95527 1.69601 1.37092 1.34107 1.13492 0.85910 0.82020 0.78616 0.77625 1.19917 1.20967 1.19869 0.89902 0.93076 0.93584 0.91955 0.91729 0.91925 0.91866 0.91744 0.91433 0.91226 0.91165 0.76240 0.90987 0.91165 0.86600 0.86970 0.94315 0.90511 0.83040 0.93783 0.89563 0.77448 0.91808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 8.87 37.16 0.33 -1.02 16 2 C -0.07 -0.55 1.89 -90.62 -0.17 -0.72 16 3 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 4 C -0.11 -0.72 5.20 -26.73 -0.14 -0.86 16 5 C -0.12 -0.74 5.92 -26.73 -0.16 -0.90 16 6 C -0.12 -0.72 5.92 -26.74 -0.16 -0.88 16 7 C -0.11 -0.79 5.10 -26.75 -0.14 -0.93 16 8 C -0.10 -0.77 2.06 -91.79 -0.19 -0.95 16 9 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 10 C 0.52 5.17 6.86 -10.99 -0.08 5.10 16 11 O -0.54 -7.16 13.66 5.55 0.08 -7.08 16 12 N -0.73 -6.28 5.44 -61.47 -0.33 -6.61 16 13 C 0.15 1.40 6.11 -5.19 -0.03 1.37 16 14 C -0.18 -1.62 9.24 -36.03 -0.33 -1.95 16 15 C -0.11 -1.13 9.38 -36.03 -0.34 -1.46 16 16 C 0.08 0.95 6.13 -4.98 -0.03 0.92 16 17 N -0.66 -10.46 6.11 -116.34 -0.71 -11.17 16 18 C 0.05 0.86 6.17 -4.98 -0.03 0.83 16 19 C 0.44 10.32 7.82 -10.99 -0.09 10.23 16 20 O -0.58 -15.82 15.78 5.54 0.09 -15.73 16 21 N -0.56 -14.18 5.29 -10.96 -0.06 -14.24 16 22 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 23 H 0.10 2.98 7.16 -52.48 -0.38 2.61 16 24 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 25 N -0.90 -24.35 13.05 55.50 0.72 -23.63 16 26 Si 0.93 20.95 29.55 -169.99 -5.02 15.92 16 27 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 28 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 29 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 30 H 0.08 0.89 5.51 -51.93 -0.29 0.61 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.46 7.56 -51.93 -0.39 0.07 16 41 H 0.40 2.79 7.88 -40.82 -0.32 2.46 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.07 0.72 7.79 -51.93 -0.40 0.31 16 44 H 0.12 0.92 7.84 -52.49 -0.41 0.51 16 45 H 0.11 1.12 7.84 -52.49 -0.41 0.71 16 46 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.08 0.83 7.79 -51.93 -0.40 0.43 16 48 H 0.35 5.70 8.42 -39.29 -0.33 5.37 16 49 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 50 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 51 H 0.39 9.41 7.90 -40.82 -0.32 9.08 16 52 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 418.15 15.07 6.30 6.30 Total: -1.00 -32.41 418.15 -9.86 -42.27 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: -9.14 Total: 13.20 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -1.79 Total: 0.77 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: -0.38 Total: -55.65 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: 0.16 Total: -22.82 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -32.41 -9.86 -42.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321221535.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.765 kcal (2) G-P(sol) polarization free energy of solvation -32.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.55 seconds