Wall clock time and date at job start Tue Mar 31 2020 20:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47080 * 2 1 4 4 C 1.52999 * 109.47194 * 239.99332 * 2 1 3 5 5 C 1.53001 * 109.47060 * 180.02562 * 4 2 1 6 6 C 1.52995 * 109.47325 * 59.99660 * 5 4 2 7 7 C 1.52996 * 109.47565 * 300.00458 * 6 5 4 8 8 C 1.53000 * 109.46689 * 119.99531 * 2 1 3 9 9 H 1.09004 * 109.47574 * 59.99877 * 8 2 1 10 10 C 1.50705 * 109.47573 * 300.00051 * 8 2 1 11 11 O 1.21285 * 119.99408 * 359.97438 * 10 8 2 12 12 N 1.34772 * 120.00442 * 180.02562 * 10 8 2 13 13 C 1.46500 * 120.00015 * 179.97438 * 12 10 8 14 14 C 1.50699 * 109.46915 * 179.97438 * 13 12 10 15 15 C 1.31005 * 119.99776 * 125.00274 * 14 13 12 16 16 C 1.50702 * 119.99932 * 180.27660 * 15 14 13 17 17 N 1.46899 * 109.47025 * 124.72105 * 16 15 14 18 18 C 1.46899 * 110.99934 * 179.97438 * 17 16 15 19 19 C 1.50695 * 109.47442 * 179.97438 * 18 17 16 20 20 O 1.21299 * 119.99991 * 0.02562 * 19 18 17 21 21 N 1.34775 * 120.00471 * 179.97438 * 19 18 17 22 22 C 1.37095 * 120.00404 * 180.02562 * 21 19 18 23 23 H 1.08004 * 119.99646 * 359.97438 * 22 21 19 24 24 C 1.38952 * 119.99901 * 180.02562 * 22 21 19 25 25 N 1.31406 * 120.00202 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99563 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47225 * 60.00122 * 26 24 22 28 28 H 1.48501 * 109.47233 * 179.97438 * 26 24 22 29 29 H 1.48502 * 109.47290 * 299.99794 * 26 24 22 30 30 H 1.09006 * 109.47466 * 300.00598 * 1 2 3 31 31 H 1.09007 * 109.47116 * 60.00524 * 1 2 3 32 32 H 1.09006 * 109.47456 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46922 * 300.00032 * 4 2 1 34 34 H 1.08998 * 109.46829 * 60.00281 * 4 2 1 35 35 H 1.08996 * 109.47160 * 180.02562 * 5 4 2 36 36 H 1.09003 * 109.46389 * 299.99818 * 5 4 2 37 37 H 1.09006 * 109.46731 * 60.00153 * 6 5 4 38 38 H 1.09003 * 109.47262 * 179.97438 * 6 5 4 39 39 H 1.09006 * 109.46847 * 299.99624 * 7 6 5 40 40 H 1.08998 * 109.47064 * 179.97438 * 7 6 5 41 41 H 0.97006 * 119.99902 * 359.97438 * 12 10 8 42 42 H 1.09005 * 109.47251 * 59.99732 * 13 12 10 43 43 H 1.08994 * 109.46778 * 299.99704 * 13 12 10 44 44 H 1.08002 * 120.00511 * 305.00212 * 14 13 12 45 45 H 1.08002 * 119.99708 * 359.97438 * 15 14 13 46 46 H 1.09002 * 109.47005 * 244.72313 * 16 15 14 47 47 H 1.08999 * 109.47073 * 4.72010 * 16 15 14 48 48 H 1.00901 * 111.00139 * 56.04374 * 17 16 15 49 49 H 1.09004 * 109.47505 * 300.00547 * 18 17 16 50 50 H 1.09005 * 109.47204 * 59.99902 * 18 17 16 51 51 H 0.97008 * 119.99552 * 0.02562 * 21 19 18 52 52 H 0.96999 * 119.99855 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5700 -0.7219 -1.2488 6 6 4.0795 -1.4433 0.0005 7 6 3.5695 -0.7220 1.2497 8 6 2.0399 -0.7212 1.2493 9 1 1.6765 -1.7489 1.2495 10 6 1.5375 -0.0107 2.4798 11 8 0.8406 0.9757 2.3684 12 7 1.8634 -0.4708 3.7039 13 6 1.3755 0.2203 4.9000 14 6 1.8776 -0.4902 6.1305 15 6 2.5484 0.1714 7.0409 16 6 3.0559 -0.5404 8.2684 17 7 4.5059 -0.3371 8.3879 18 6 5.0367 -1.0179 9.5765 19 6 6.5234 -0.7879 9.6651 20 8 7.0855 -0.1220 8.8214 21 7 7.2284 -1.3213 10.6824 22 6 8.5808 -1.1117 10.7633 23 1 9.0813 -0.5194 10.0116 24 6 9.3077 -1.6621 11.8119 25 7 8.6989 -2.3840 12.7257 26 14 11.1505 -1.3770 11.9217 27 1 11.4209 0.0796 12.0234 28 1 11.6871 -2.0646 13.1235 29 1 11.8086 -1.9189 10.7057 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 1.6766 -1.7491 -1.2490 34 1 1.6767 -0.2076 -2.1391 35 1 3.9333 -1.2354 -2.1389 36 1 3.9336 0.3057 -1.2487 37 1 3.7158 -2.4709 0.0004 38 1 5.1695 -1.4441 0.0005 39 1 3.9332 0.3056 1.2498 40 1 3.9321 -1.2363 2.1397 41 1 2.4211 -1.2595 3.7930 42 1 0.2854 0.2204 4.9003 43 1 1.7390 1.2478 4.8995 44 1 1.6846 -1.5446 6.2620 45 1 2.7418 1.2257 6.9093 46 1 2.5589 -0.1401 9.1521 47 1 2.8442 -1.6063 8.1840 48 1 4.7332 0.6458 8.4028 49 1 4.5534 -0.6206 10.4690 50 1 4.8387 -2.0872 9.5016 51 1 6.7788 -1.8536 11.3574 52 1 9.2062 -2.7679 13.4579 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321221535.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:43 Heat of formation + Delta-G solvation = -108.380152 kcal Electronic energy + Delta-G solvation = -28005.737026 eV Core-core repulsion = 24003.105192 eV Total energy + Delta-G solvation = -4002.631834 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.40176 -40.15795 -38.83108 -37.71812 -36.36143 -35.82234 -34.01158 -33.31452 -33.23000 -32.03618 -29.61989 -27.84862 -27.13847 -25.83030 -24.39370 -23.50024 -22.23275 -21.63046 -21.24897 -20.78882 -20.34585 -19.86032 -18.18952 -17.88351 -17.11529 -16.97897 -16.47135 -16.35580 -16.00081 -15.79503 -15.53154 -15.31663 -15.28157 -15.11856 -15.01891 -14.80910 -14.59864 -14.07910 -13.81469 -13.57582 -13.49542 -13.25886 -13.13302 -13.03776 -12.89835 -12.71989 -12.70098 -12.43210 -12.42421 -12.13309 -12.12665 -12.03105 -11.78698 -11.56327 -11.50328 -11.36370 -10.98753 -10.60604 -10.35976 -10.31322 -10.01866 -9.95454 -9.27436 -8.46513 -5.95369 1.04931 1.40148 1.42309 1.53097 1.64056 2.05350 2.29760 2.40661 3.01309 3.20767 3.58347 3.60770 3.70660 3.76889 3.78833 4.08937 4.16215 4.23292 4.29804 4.30954 4.43364 4.45668 4.48141 4.49196 4.54196 4.56106 4.57928 4.60115 4.66830 4.69794 4.79736 4.86777 4.92783 5.02423 5.05646 5.17347 5.22267 5.30517 5.35118 5.36936 5.40760 5.40879 5.56175 5.60408 5.66452 5.77321 5.89772 6.09792 6.36721 6.56386 6.60243 7.12580 7.26921 7.56242 8.11695 8.70484 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015230 B = 0.001603 C = 0.001476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.978170 B =17468.172455 C =18960.789480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.069 4.069 3 H 0.053 0.947 4 C -0.109 4.109 5 C -0.123 4.123 6 C -0.116 4.116 7 C -0.111 4.111 8 C -0.094 4.094 9 H 0.116 0.884 10 C 0.512 3.488 11 O -0.576 6.576 12 N -0.718 5.718 13 C 0.153 3.847 14 C -0.162 4.162 15 C -0.127 4.127 16 C 0.087 3.913 17 N -0.681 5.681 18 C 0.065 3.935 19 C 0.436 3.564 20 O -0.625 6.625 21 N -0.572 5.572 22 C -0.336 4.336 23 H 0.078 0.922 24 C -0.012 4.012 25 N -0.919 5.919 26 Si 0.993 3.007 27 H -0.272 1.272 28 H -0.270 1.270 29 H -0.272 1.272 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.053 0.947 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.052 0.948 40 H 0.077 0.923 41 H 0.413 0.587 42 H 0.073 0.927 43 H 0.055 0.945 44 H 0.134 0.866 45 H 0.108 0.892 46 H 0.052 0.948 47 H 0.089 0.911 48 H 0.344 0.656 49 H 0.068 0.932 50 H 0.107 0.893 51 H 0.397 0.603 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.904 -2.046 -21.679 28.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.088 4.088 3 H 0.071 0.929 4 C -0.147 4.147 5 C -0.160 4.160 6 C -0.153 4.153 7 C -0.148 4.148 8 C -0.115 4.115 9 H 0.134 0.866 10 C 0.300 3.700 11 O -0.456 6.456 12 N -0.370 5.370 13 C 0.030 3.970 14 C -0.181 4.181 15 C -0.146 4.146 16 C -0.041 4.041 17 N -0.314 5.314 18 C -0.068 4.068 19 C 0.224 3.776 20 O -0.512 6.512 21 N -0.209 5.209 22 C -0.466 4.466 23 H 0.096 0.904 24 C -0.212 4.212 25 N -0.560 5.560 26 Si 0.816 3.184 27 H -0.198 1.198 28 H -0.194 1.194 29 H -0.197 1.197 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.095 0.905 41 H 0.250 0.750 42 H 0.091 0.909 43 H 0.074 0.926 44 H 0.151 0.849 45 H 0.126 0.874 46 H 0.070 0.930 47 H 0.107 0.893 48 H 0.162 0.838 49 H 0.086 0.914 50 H 0.125 0.875 51 H 0.231 0.769 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.804 -1.531 -22.535 28.760 hybrid contribution 0.632 0.421 1.514 1.693 sum -17.172 -1.110 -21.021 27.166 Atomic orbital electron populations 1.22004 0.95125 1.01807 1.02325 1.20875 0.95814 0.98681 0.93442 0.92869 1.21590 0.95541 1.01022 0.96503 1.21579 0.95495 1.00620 0.98350 1.21523 1.00767 0.99739 0.93282 1.21534 0.92123 1.01242 0.99943 1.21410 0.97413 1.01269 0.91444 0.86566 1.21192 0.79194 0.84161 0.85472 1.90626 1.39695 1.28115 1.87145 1.46028 1.53468 1.32494 1.04970 1.20228 0.99025 0.95230 0.82504 1.22772 1.00444 1.00720 0.94185 1.22802 0.96177 0.99883 0.95782 1.21125 0.86089 1.01078 0.95826 1.60141 1.12712 1.18413 1.40084 1.21552 0.90333 1.01725 0.93147 1.20916 0.90518 0.83481 0.82732 1.90495 1.72963 1.44964 1.42735 1.41923 1.07934 1.46962 1.24122 1.19636 0.84384 1.32194 1.10382 0.90363 1.26027 1.04712 0.95710 0.94720 1.69659 1.38590 1.34073 1.13649 0.84996 0.76863 0.78541 0.77976 1.19772 1.19445 1.19726 0.92460 0.92690 0.92320 0.90757 0.91426 0.90766 0.92841 0.90455 0.91312 0.92964 0.90475 0.74998 0.90891 0.92617 0.84876 0.87374 0.93032 0.89261 0.83813 0.91401 0.87498 0.76903 0.91272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 8.87 71.98 0.64 -1.94 16 2 C -0.07 -1.07 1.89 -10.79 -0.02 -1.09 16 3 H 0.05 1.06 8.10 -2.39 -0.02 1.04 16 4 C -0.11 -1.21 5.20 30.59 0.16 -1.05 16 5 C -0.12 -1.32 5.92 30.59 0.18 -1.13 16 6 C -0.12 -1.21 5.92 30.59 0.18 -1.03 16 7 C -0.11 -1.45 5.10 30.58 0.16 -1.29 16 8 C -0.09 -1.33 2.06 -11.55 -0.02 -1.36 16 9 H 0.12 1.19 8.14 -2.38 -0.02 1.17 16 10 C 0.51 10.15 6.86 87.66 0.60 10.75 16 11 O -0.58 -15.85 13.66 -3.05 -0.04 -15.89 16 12 N -0.72 -11.75 5.44 -466.79 -2.54 -14.28 16 13 C 0.15 2.70 6.11 85.63 0.52 3.23 16 14 C -0.16 -2.56 9.24 25.64 0.24 -2.32 16 15 C -0.13 -2.40 9.38 25.64 0.24 -2.16 16 16 C 0.09 1.80 6.13 85.56 0.52 2.33 16 17 N -0.68 -20.51 6.11 -521.98 -3.19 -23.70 16 18 C 0.06 2.12 6.17 85.56 0.53 2.65 16 19 C 0.44 20.50 7.82 87.66 0.69 21.18 16 20 O -0.62 -34.56 15.78 -3.09 -0.05 -34.61 16 21 N -0.57 -29.07 5.29 -306.98 -1.62 -30.69 16 22 C -0.34 -19.03 9.68 84.04 0.81 -18.22 16 23 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 24 C -0.01 -0.62 5.50 84.93 0.47 -0.16 16 25 N -0.92 -49.07 13.05 21.66 0.28 -48.79 16 26 Si 0.99 42.61 29.55 68.60 2.03 44.63 16 27 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 28 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 29 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 30 H 0.06 1.28 5.51 -2.38 -0.01 1.26 16 31 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 33 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 34 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 38 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 40 H 0.08 0.89 7.56 -2.39 -0.02 0.88 16 41 H 0.41 4.97 7.88 -92.70 -0.73 4.24 16 42 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 43 H 0.06 1.16 7.79 -2.39 -0.02 1.14 16 44 H 0.13 1.69 7.84 -2.91 -0.02 1.66 16 45 H 0.11 2.12 7.84 -2.91 -0.02 2.10 16 46 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 47 H 0.09 1.64 7.79 -2.39 -0.02 1.62 16 48 H 0.34 11.06 8.42 -89.69 -0.76 10.30 16 49 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 50 H 0.11 3.10 8.14 -2.38 -0.02 3.08 16 51 H 0.40 19.02 7.90 -92.70 -0.73 18.29 16 52 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 Total: -1.00 -71.12 418.15 -0.54 -71.66 By element: Atomic # 1 Polarization: 44.56 SS G_CDS: -1.29 Total: 43.26 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: 5.89 Total: 8.40 kcal Atomic # 7 Polarization: -110.39 SS G_CDS: -7.07 Total: -117.46 kcal Atomic # 8 Polarization: -50.40 SS G_CDS: -0.09 Total: -50.49 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.63 kcal Total: -71.12 -0.54 -71.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321221535.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.720 kcal (2) G-P(sol) polarization free energy of solvation -71.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds