Wall clock time and date at job start Tue Mar 31 2020 21:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.46928 * 2 1 4 4 C 1.53003 * 109.46969 * 120.00025 * 2 1 3 5 5 C 1.53001 * 109.46694 * 180.02562 * 4 2 1 6 6 C 1.53003 * 109.47258 * 299.99813 * 5 4 2 7 7 H 1.09005 * 109.46971 * 300.00240 * 6 5 4 8 8 N 1.46491 * 109.47222 * 180.02562 * 6 5 4 9 9 C 1.34784 * 120.00169 * 85.00052 * 8 6 5 10 10 O 1.21348 * 119.99382 * 359.97438 * 9 8 6 11 11 C 1.49450 * 120.00135 * 179.97438 * 9 8 6 12 12 O 1.21351 * 119.99917 * 0.02562 * 11 9 8 13 13 N 1.34772 * 119.99992 * 179.97438 * 11 9 8 14 14 C 1.46498 * 120.00294 * 180.02562 * 13 11 9 15 15 C 1.53050 * 109.45698 * 275.03221 * 14 13 11 16 16 C 1.53196 * 109.30794 * 178.59646 * 15 14 13 17 17 N 1.46929 * 108.76495 * 54.65623 * 16 15 14 18 18 C 1.36939 * 120.63063 * 126.40135 * 17 16 15 19 19 H 1.08003 * 119.99896 * 331.82408 * 18 17 16 20 20 C 1.38813 * 119.99997 * 151.82737 * 18 17 16 21 21 N 1.31615 * 119.99716 * 343.07315 * 20 18 17 22 22 Si 1.86795 * 119.99936 * 163.06705 * 20 18 17 23 23 H 1.48503 * 109.47318 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.47019 * 120.00274 * 22 20 18 25 25 H 1.48498 * 109.47361 * 239.99792 * 22 20 18 26 26 C 1.46927 * 118.73666 * 306.38068 * 17 16 15 27 27 C 1.53036 * 109.46363 * 154.97870 * 14 13 11 28 28 C 1.52999 * 109.47055 * 60.00080 * 6 5 4 29 29 C 1.53000 * 109.47534 * 300.00209 * 28 6 5 30 30 H 1.08997 * 109.46928 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47046 * 299.99874 * 1 2 3 32 32 H 1.09002 * 109.47319 * 60.00226 * 1 2 3 33 33 H 1.08997 * 109.46822 * 300.00111 * 4 2 1 34 34 H 1.08995 * 109.46833 * 60.00011 * 4 2 1 35 35 H 1.08997 * 109.47080 * 60.00051 * 5 4 2 36 36 H 1.09000 * 109.47191 * 180.02562 * 5 4 2 37 37 H 0.96999 * 120.00060 * 264.99946 * 8 6 5 38 38 H 0.97000 * 120.00073 * 0.02562 * 13 11 9 39 39 H 1.09000 * 109.45997 * 34.99601 * 14 13 11 40 40 H 1.08996 * 109.49356 * 298.56390 * 15 14 13 41 41 H 1.08999 * 109.49555 * 58.66339 * 15 14 13 42 42 H 1.08993 * 109.59973 * 294.86914 * 16 15 14 43 43 H 1.08997 * 109.69818 * 174.50432 * 16 15 14 44 44 H 0.97001 * 119.99874 * 180.02562 * 21 20 18 45 45 H 1.08991 * 109.58647 * 293.81955 * 26 17 16 46 46 H 1.08999 * 109.70226 * 173.46545 * 26 17 16 47 47 H 1.09003 * 109.49206 * 301.33582 * 27 14 13 48 48 H 1.09000 * 109.49708 * 61.39591 * 27 14 13 49 49 H 1.08998 * 109.47259 * 179.97438 * 28 6 5 50 50 H 1.09005 * 109.47101 * 60.00239 * 28 6 5 51 51 H 1.08993 * 109.47349 * 180.02562 * 29 28 6 52 52 H 1.09005 * 109.46952 * 300.00122 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5701 -0.7207 1.2495 6 6 4.0806 -1.4416 0.0003 7 1 3.7176 -2.4694 0.0001 8 7 5.5455 -1.4415 0.0008 9 6 6.2192 -2.3979 0.6703 10 8 5.6122 -3.2586 1.2730 11 6 7.7137 -2.3982 0.6704 12 8 8.3207 -1.5371 0.0681 13 7 8.3874 -3.3541 1.3403 14 6 9.8523 -3.3541 1.3409 15 6 10.3627 -4.0752 0.0911 16 6 11.8942 -4.0426 0.0773 17 7 12.3902 -4.6029 1.3418 18 6 13.2988 -5.6274 1.3421 19 1 13.3271 -6.3244 0.5176 20 6 14.1834 -5.7703 2.4023 21 7 14.3875 -4.7666 3.2289 22 14 15.0840 -7.3870 2.6559 23 1 14.6826 -8.3486 1.5978 24 1 16.5489 -7.1544 2.5829 25 1 14.7370 -7.9433 3.9884 26 6 11.8932 -4.0426 2.6058 27 6 10.3617 -4.0749 2.5911 28 6 3.5705 -0.7204 -1.2490 29 6 2.0405 -0.7209 -1.2493 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6767 -0.2074 2.1392 34 1 1.6767 -1.7489 1.2492 35 1 3.9330 0.3071 1.2498 36 1 3.9334 -1.2349 2.1393 37 1 6.0307 -0.7533 -0.4806 38 1 7.9022 -4.0422 1.8221 39 1 10.2155 -2.3264 1.3408 40 1 10.0206 -5.1100 0.1030 41 1 9.9804 -3.5753 -0.7989 42 1 12.2371 -3.0131 -0.0256 43 1 12.2669 -4.6370 -0.7568 44 1 15.0059 -4.8662 3.9695 45 1 12.2361 -3.0132 2.7091 46 1 12.2632 -4.6364 3.4417 47 1 9.9787 -3.5748 3.4807 48 1 10.0192 -5.1096 2.5795 49 1 3.9346 -1.2337 -2.1389 50 1 3.9335 0.3075 -1.2488 51 1 1.6772 -0.2075 -2.1395 52 1 1.6776 -1.7487 -1.2495 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322822323.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:16 Heat of formation + Delta-G solvation = -79.685417 kcal Electronic energy + Delta-G solvation = -29488.362275 eV Core-core repulsion = 25486.974738 eV Total energy + Delta-G solvation = -4001.387537 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.83089 -39.48757 -38.32992 -37.30907 -35.25682 -34.37170 -32.14831 -31.51312 -31.23285 -30.20403 -29.49882 -26.88999 -25.43394 -23.96872 -23.20292 -22.31125 -21.92878 -21.25151 -20.55103 -20.06687 -19.45748 -18.29564 -17.01620 -16.75943 -16.08671 -15.82384 -15.57850 -15.01356 -14.74104 -14.72944 -14.65100 -14.21535 -14.02778 -13.70051 -13.59977 -13.47060 -13.14433 -13.00538 -12.69625 -12.65452 -12.61809 -12.42360 -12.05004 -11.73763 -11.56036 -11.49905 -11.37148 -11.15577 -11.10749 -10.86762 -10.78016 -10.74780 -10.56888 -10.51150 -10.31707 -10.06961 -9.84955 -9.69854 -9.43884 -9.40205 -8.86817 -8.48544 -6.70891 -5.81366 -3.23693 1.43522 2.34317 3.24174 3.36397 3.44667 3.46854 3.63138 4.19709 4.23703 4.39984 4.48367 4.52571 4.59830 4.71740 4.94019 5.00414 5.05381 5.09117 5.22356 5.28206 5.31252 5.37005 5.38960 5.45660 5.48385 5.52012 5.59529 5.67796 5.71709 5.75654 5.79861 5.80067 5.91660 6.02144 6.02904 6.11509 6.16262 6.26264 6.46798 6.48776 6.53825 6.71505 6.77193 6.93183 6.97793 7.28736 7.42245 7.60359 7.74862 7.78884 8.07650 8.42678 9.18819 9.81831 10.38551 11.27662 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.038554 B = 0.001819 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.080544 B =15387.910529 C =15591.748230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 H 0.071 0.929 4 C -0.111 4.111 5 C -0.131 4.131 6 C 0.144 3.856 7 H 0.091 0.909 8 N -0.701 5.701 9 C 0.509 3.491 10 O -0.521 6.521 11 C 0.502 3.498 12 O -0.525 6.525 13 N -0.690 5.690 14 C 0.148 3.852 15 C -0.140 4.140 16 C 0.148 3.852 17 N -0.592 5.592 18 C -0.252 4.252 19 H 0.067 0.933 20 C 0.002 3.998 21 N -0.903 5.903 22 Si 0.902 3.098 23 H -0.277 1.277 24 H -0.290 1.290 25 H -0.289 1.289 26 C 0.175 3.825 27 C -0.148 4.148 28 C -0.128 4.128 29 C -0.110 4.110 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.412 0.588 38 H 0.408 0.592 39 H 0.086 0.914 40 H 0.061 0.939 41 H 0.055 0.945 42 H 0.021 0.979 43 H 0.058 0.942 44 H 0.254 0.746 45 H 0.022 0.978 46 H 0.093 0.907 47 H 0.056 0.944 48 H 0.063 0.937 49 H 0.072 0.928 50 H 0.071 0.929 51 H 0.068 0.932 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.501 9.892 -6.268 28.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.114 4.114 3 H 0.089 0.911 4 C -0.149 4.149 5 C -0.170 4.170 6 C 0.040 3.960 7 H 0.109 0.891 8 N -0.354 5.354 9 C 0.290 3.710 10 O -0.397 6.397 11 C 0.282 3.718 12 O -0.401 6.401 13 N -0.341 5.341 14 C 0.045 3.955 15 C -0.180 4.180 16 C 0.021 3.979 17 N -0.315 5.315 18 C -0.382 4.382 19 H 0.084 0.916 20 C -0.196 4.196 21 N -0.547 5.547 22 Si 0.732 3.268 23 H -0.202 1.202 24 H -0.217 1.217 25 H -0.216 1.216 26 C 0.048 3.952 27 C -0.188 4.188 28 C -0.166 4.166 29 C -0.148 4.148 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.248 0.752 38 H 0.244 0.756 39 H 0.104 0.896 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.039 0.961 43 H 0.076 0.924 44 H 0.064 0.936 45 H 0.040 0.960 46 H 0.111 0.889 47 H 0.075 0.925 48 H 0.081 0.919 49 H 0.090 0.910 50 H 0.089 0.911 51 H 0.087 0.913 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -26.350 9.868 -6.129 28.797 hybrid contribution 0.483 -0.755 0.233 0.926 sum -25.867 9.113 -5.896 28.052 Atomic orbital electron populations 1.21827 0.95113 1.01909 1.01673 1.21200 0.95575 0.99768 0.94865 0.91061 1.21553 0.94576 1.01070 0.97685 1.21943 0.95934 1.00981 0.98122 1.21112 0.78310 1.01247 0.95371 0.89079 1.45872 1.07291 1.30064 1.52169 1.20400 0.88862 0.82022 0.79744 1.90749 1.69986 1.36779 1.42166 1.20037 0.87837 0.83022 0.80951 1.90758 1.69634 1.37039 1.42716 1.46225 1.08675 1.28830 1.50345 1.21243 0.75889 1.01164 0.97159 1.22405 0.99473 0.99961 0.96198 1.20870 0.89989 0.96764 0.90275 1.44102 1.48304 1.39701 0.99410 1.19234 1.09550 1.02793 1.06607 0.91558 1.25057 0.97174 0.97477 0.99939 1.70029 1.37553 1.28953 1.18200 0.86223 0.79211 0.83574 0.77762 1.20249 1.21722 1.21553 1.20748 0.85996 0.97693 0.90763 1.22571 1.01754 0.99702 0.94738 1.21823 0.96523 1.01163 0.97071 1.21539 0.94071 1.01235 0.97928 0.92616 0.92662 0.92705 0.91570 0.91597 0.91531 0.91177 0.75190 0.75638 0.89574 0.92034 0.92640 0.96086 0.92390 0.93625 0.95990 0.88881 0.92497 0.91875 0.90975 0.91078 0.91341 0.91539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.20 37.16 0.34 -0.36 16 2 C -0.10 -0.51 2.72 -90.61 -0.25 -0.76 16 3 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 4 C -0.11 -0.70 5.20 -26.73 -0.14 -0.84 16 5 C -0.13 -1.03 5.49 -26.73 -0.15 -1.18 16 6 C 0.14 1.19 2.45 -67.93 -0.17 1.02 16 7 H 0.09 0.88 7.58 -51.93 -0.39 0.49 16 8 N -0.70 -7.02 5.07 -54.24 -0.28 -7.29 16 9 C 0.51 6.62 7.85 -11.58 -0.09 6.53 16 10 O -0.52 -7.70 16.14 5.50 0.09 -7.61 16 11 C 0.50 7.44 7.85 -11.59 -0.09 7.35 16 12 O -0.52 -8.82 16.14 5.50 0.09 -8.73 16 13 N -0.69 -10.28 5.07 -54.19 -0.27 -10.55 16 14 C 0.15 2.56 2.42 -67.89 -0.16 2.39 16 15 C -0.14 -2.53 5.65 -26.60 -0.15 -2.68 16 16 C 0.15 3.13 6.52 -3.71 -0.02 3.10 16 17 N -0.59 -14.63 2.99 -172.32 -0.52 -15.15 16 18 C -0.25 -6.84 9.58 -15.06 -0.14 -6.99 16 19 H 0.07 1.77 7.89 -52.48 -0.41 1.36 16 20 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 21 N -0.90 -25.88 11.19 55.49 0.62 -25.26 16 22 Si 0.90 21.49 29.59 -169.99 -5.03 16.46 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 C 0.17 4.05 5.30 -3.71 -0.02 4.03 16 27 C -0.15 -2.70 5.55 -26.61 -0.15 -2.85 16 28 C -0.13 -0.77 5.39 -26.73 -0.14 -0.92 16 29 C -0.11 -0.58 5.21 -26.73 -0.14 -0.71 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.41 3.72 8.08 -40.82 -0.33 3.39 16 38 H 0.41 5.57 8.07 -40.82 -0.33 5.24 16 39 H 0.09 1.62 7.58 -51.93 -0.39 1.22 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.06 1.20 7.93 -51.93 -0.41 0.78 16 44 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 45 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.09 2.41 6.07 -51.93 -0.31 2.09 16 47 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 48 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 49 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 50 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 51 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 52 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 406.87 15.07 6.13 6.13 Total: -1.00 -30.51 406.87 -10.05 -40.56 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -9.33 Total: 4.31 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: -1.56 Total: 7.12 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: -0.44 Total: -58.25 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: 0.18 Total: -16.34 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -30.51 -10.05 -40.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322822323.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.122 kcal (2) G-P(sol) polarization free energy of solvation -30.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds