Wall clock time and date at job start Tue Mar 31 2020 20:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 110.05857 * 2 1 4 4 C 1.54269 * 110.03182 * 121.41670 * 2 1 3 5 5 C 1.54897 * 104.19573 * 142.89523 * 4 2 1 6 6 C 1.54884 * 102.74695 * 322.05794 * 5 4 2 7 7 C 1.53878 * 110.03422 * 238.58127 * 2 1 3 8 8 C 1.52996 * 110.03148 * 0.05169 * 7 2 1 9 9 C 1.50702 * 110.03116 * 121.43254 * 7 2 1 10 10 O 1.21287 * 119.99738 * 359.97438 * 9 7 2 11 11 N 1.34769 * 120.00142 * 180.02562 * 9 7 2 12 12 C 1.46497 * 120.00151 * 180.27358 * 11 9 7 13 13 C 1.53008 * 109.47070 * 174.73921 * 12 11 9 14 14 N 1.46898 * 115.54966 * 273.28120 * 13 12 11 15 15 C 1.46904 * 111.00129 * 294.44894 * 14 13 12 16 16 C 1.50696 * 109.47080 * 179.02834 * 15 14 13 17 17 O 1.21289 * 120.00213 * 359.97438 * 16 15 14 18 18 N 1.34785 * 119.99914 * 179.97438 * 16 15 14 19 19 C 1.37096 * 120.00024 * 179.97438 * 18 16 15 20 20 H 1.08000 * 120.00027 * 0.02562 * 19 18 16 21 21 C 1.38943 * 119.99937 * 180.02562 * 19 18 16 22 22 N 1.31416 * 120.00244 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99961 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47330 * 90.00459 * 23 21 19 25 25 H 1.48505 * 109.47185 * 209.99794 * 23 21 19 26 26 H 1.48499 * 109.47444 * 330.00014 * 23 21 19 27 27 C 1.53002 * 117.49756 * 127.57670 * 13 12 11 28 28 C 1.52994 * 117.49870 * 58.95360 * 13 12 11 29 29 H 1.09000 * 109.47092 * 181.41348 * 1 2 3 30 30 H 1.09000 * 109.47252 * 301.41760 * 1 2 3 31 31 H 1.08997 * 109.47204 * 61.41534 * 1 2 3 32 32 H 1.09001 * 110.48598 * 261.57385 * 4 2 1 33 33 H 1.09000 * 110.48919 * 24.08729 * 4 2 1 34 34 H 1.08999 * 110.75356 * 80.37371 * 5 4 2 35 35 H 1.08996 * 110.75169 * 203.55605 * 5 4 2 36 36 H 1.08998 * 110.48821 * 279.26246 * 6 5 4 37 37 H 1.09004 * 110.48567 * 156.62433 * 6 5 4 38 38 H 1.08997 * 109.47312 * 180.68562 * 8 7 2 39 39 H 1.09007 * 109.47175 * 300.68874 * 8 7 2 40 40 H 1.09006 * 109.47173 * 60.68360 * 8 7 2 41 41 H 0.97009 * 120.00048 * 359.97438 * 11 9 7 42 42 H 1.08997 * 109.47285 * 294.73708 * 12 11 9 43 43 H 1.09005 * 109.47171 * 54.74015 * 12 11 9 44 44 H 1.00891 * 110.99882 * 170.49624 * 14 13 12 45 45 H 1.08996 * 109.47135 * 299.03010 * 15 14 13 46 46 H 1.09001 * 109.47037 * 59.02875 * 15 14 13 47 47 H 0.97004 * 119.99753 * 0.02562 * 18 16 15 48 48 H 0.97004 * 120.00095 * 179.97438 * 22 21 19 49 49 H 1.08996 * 117.49849 * 359.97438 * 27 13 12 50 50 H 1.08994 * 117.50099 * 145.01901 * 27 13 12 51 51 H 1.09009 * 117.49727 * 214.97836 * 28 13 12 52 52 H 1.09004 * 117.50028 * 359.97438 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7555 1.2369 5 6 3.3136 -1.5008 0.7191 6 6 2.8874 -1.9407 -0.7035 7 6 2.0571 -0.7536 -1.2337 8 6 0.8862 -1.2659 -2.0748 9 6 2.9276 0.1564 -2.0615 10 8 3.1157 1.3015 -1.7087 11 7 3.4962 -0.3019 -3.1941 12 6 4.3473 0.5810 -3.9956 13 6 4.9674 -0.2149 -5.1460 14 7 6.2235 -0.9087 -4.8316 15 6 7.2961 0.0514 -4.5385 16 6 8.5598 -0.6958 -4.1981 17 8 8.5662 -1.9086 -4.1991 18 7 9.6829 -0.0162 -3.8926 19 6 10.8324 -0.6959 -3.5824 20 1 10.8381 -1.7759 -3.5833 21 6 11.9901 0.0047 -3.2669 22 7 11.9831 1.3188 -3.2653 23 14 13.5565 -0.9214 -2.8450 24 1 14.3378 -1.1632 -4.0845 25 1 14.3681 -0.1156 -1.8978 26 1 13.2091 -2.2216 -2.2174 27 6 4.8035 0.3442 -6.5607 28 6 4.0130 -0.8932 -6.1308 29 1 -0.3633 -1.0273 0.0253 30 1 -0.3634 0.5357 0.8770 31 1 -0.3633 0.4917 -0.9024 32 1 2.3296 -0.0536 2.0255 33 1 1.3133 -1.4644 1.5981 34 1 4.1709 -0.8291 0.6752 35 1 3.5343 -2.3660 1.3442 36 1 2.2771 -2.8426 -0.6571 37 1 3.7637 -2.1038 -1.3309 38 1 1.2695 -1.8082 -2.9390 39 1 0.2697 -1.9325 -1.4716 40 1 0.2850 -0.4218 -2.4129 41 1 3.3455 -1.2176 -3.4764 42 1 3.7468 1.3958 -4.3999 43 1 5.1394 0.9899 -3.3683 44 1 6.4898 -1.5310 -5.5797 45 1 7.4697 0.6800 -5.4118 46 1 7.0043 0.6754 -3.6938 47 1 9.6777 0.9538 -3.8914 48 1 12.7912 1.8079 -3.0447 49 1 4.2537 1.2787 -6.6720 50 1 5.6279 0.1975 -7.2585 51 1 4.3174 -1.8541 -6.5458 52 1 2.9433 -0.7728 -5.9590 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323541236.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:42 Heat of formation + Delta-G solvation = -62.575957 kcal Electronic energy + Delta-G solvation = -30078.381613 eV Core-core repulsion = 26077.735998 eV Total energy + Delta-G solvation = -4000.645615 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.80052 -39.15451 -37.96825 -37.41529 -34.33359 -33.97925 -32.62162 -32.03637 -31.19058 -31.16188 -27.26352 -26.54237 -25.66761 -25.24432 -24.08413 -22.68843 -21.73715 -20.56645 -19.94163 -19.24965 -18.48698 -17.89669 -17.26856 -16.51626 -16.08637 -15.75087 -15.59444 -15.24420 -14.69354 -14.52433 -14.29326 -14.20545 -14.07480 -13.95375 -13.79410 -13.62186 -13.26201 -13.01227 -12.70857 -12.51049 -12.24449 -12.08012 -11.92024 -11.73218 -11.64536 -11.49420 -11.41100 -11.15033 -11.10354 -10.94596 -10.90454 -10.81159 -10.78593 -10.49278 -10.39898 -10.33527 -10.21190 -9.63674 -9.51563 -9.04373 -8.45184 -8.09232 -7.96739 -6.41897 -3.82962 2.65106 3.01247 3.17504 3.26351 3.32181 3.63168 3.88732 4.05246 4.24006 4.25244 4.36292 4.46999 4.50651 4.64097 4.80075 4.90778 4.99135 5.10044 5.10605 5.16391 5.21840 5.24209 5.24974 5.32994 5.44445 5.51733 5.54395 5.56079 5.63485 5.69486 5.70453 5.71706 5.74678 5.75766 5.78861 5.85105 5.93171 5.94981 5.98938 6.07180 6.08074 6.14267 6.25090 6.31762 6.46053 7.11209 7.49266 7.54782 7.55523 8.05222 8.23376 8.60182 9.17083 9.53356 10.04338 10.75750 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012090 B = 0.002644 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.484476 B =10587.922478 C =12001.530242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 H 0.097 0.903 4 C -0.117 4.117 5 C -0.126 4.126 6 C -0.114 4.114 7 C -0.080 4.080 8 C -0.138 4.138 9 C 0.524 3.476 10 O -0.542 6.542 11 N -0.716 5.716 12 C 0.166 3.834 13 C 0.039 3.961 14 N -0.626 5.626 15 C 0.050 3.950 16 C 0.441 3.559 17 O -0.584 6.584 18 N -0.562 5.562 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.901 5.901 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.283 1.283 26 H -0.269 1.269 27 C -0.206 4.206 28 C -0.167 4.167 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.056 0.944 39 H 0.071 0.929 40 H 0.062 0.938 41 H 0.403 0.597 42 H 0.069 0.931 43 H 0.079 0.921 44 H 0.354 0.646 45 H 0.047 0.953 46 H 0.087 0.913 47 H 0.393 0.607 48 H 0.272 0.728 49 H 0.097 0.903 50 H 0.097 0.903 51 H 0.100 0.900 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.973 -2.289 0.645 24.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.107 4.107 3 H 0.115 0.885 4 C -0.155 4.155 5 C -0.164 4.164 6 C -0.152 4.152 7 C -0.083 4.083 8 C -0.196 4.196 9 C 0.310 3.690 10 O -0.419 6.419 11 N -0.367 5.367 12 C 0.042 3.958 13 C -0.054 4.054 14 N -0.256 5.256 15 C -0.082 4.082 16 C 0.226 3.774 17 O -0.469 6.469 18 N -0.198 5.198 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.542 5.542 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.247 4.247 28 C -0.205 4.205 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.238 0.762 42 H 0.088 0.912 43 H 0.098 0.902 44 H 0.174 0.826 45 H 0.065 0.935 46 H 0.105 0.895 47 H 0.226 0.774 48 H 0.082 0.918 49 H 0.116 0.884 50 H 0.116 0.884 51 H 0.118 0.882 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -23.789 -2.244 1.614 23.949 hybrid contribution 1.106 0.157 -0.953 1.468 sum -22.683 -2.088 0.662 22.788 Atomic orbital electron populations 1.21970 0.95018 1.01525 1.01564 1.21811 0.95458 1.01176 0.92249 0.88527 1.22429 0.97154 0.98801 0.97116 1.22486 0.98069 1.00163 0.95674 1.22495 0.99421 0.96180 0.97069 1.21414 0.95420 0.95659 0.95796 1.21987 0.97006 1.01305 0.99267 1.20451 0.79888 0.88084 0.80536 1.90663 1.61806 1.19259 1.70149 1.45869 1.49903 1.16230 1.24677 1.20713 0.93440 0.90944 0.90724 1.21871 0.93976 1.00429 0.89158 1.59854 1.00558 1.17975 1.47261 1.21688 0.91175 0.94391 1.00971 1.19747 0.84534 0.88309 0.84782 1.90520 1.84851 1.13702 1.57818 1.41857 1.08659 1.09221 1.60110 1.19692 0.86601 0.93391 1.43242 0.87927 1.25270 0.99609 0.95613 0.97432 1.69616 1.29860 1.05788 1.48920 0.85858 0.80856 0.79248 0.78327 1.20421 1.20889 1.19388 1.23645 1.03744 0.98167 0.99133 1.23136 0.97652 0.97472 1.02233 0.92465 0.92856 0.92542 0.91630 0.91635 0.91201 0.91236 0.90524 0.90704 0.92467 0.91056 0.91908 0.76214 0.91235 0.90234 0.82597 0.93471 0.89454 0.77424 0.91831 0.88444 0.88421 0.88157 0.88200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 7.89 37.15 0.29 -0.82 16 2 C -0.09 -0.87 3.10 -89.50 -0.28 -1.15 16 3 H 0.10 1.22 6.39 -51.93 -0.33 0.89 16 4 C -0.12 -1.07 6.36 -25.07 -0.16 -1.23 16 5 C -0.13 -1.28 6.91 -24.74 -0.17 -1.45 16 6 C -0.11 -1.08 5.88 -25.08 -0.15 -1.23 16 7 C -0.08 -0.77 0.78 -154.54 -0.12 -0.89 16 8 C -0.14 -1.00 7.09 37.16 0.26 -0.74 16 9 C 0.52 6.69 6.43 -10.99 -0.07 6.62 16 10 O -0.54 -8.94 15.20 5.55 0.08 -8.86 16 11 N -0.72 -8.13 5.07 -60.29 -0.31 -8.43 16 12 C 0.17 2.05 5.74 -4.04 -0.02 2.02 16 13 C 0.04 0.46 1.90 -131.60 -0.25 0.21 16 14 N -0.63 -9.64 6.28 -101.22 -0.64 -10.28 16 15 C 0.05 0.88 6.02 -4.98 -0.03 0.85 16 16 C 0.44 10.40 7.82 -10.98 -0.09 10.31 16 17 O -0.58 -15.75 15.80 5.55 0.09 -15.67 16 18 N -0.56 -14.35 5.29 -10.97 -0.06 -14.41 16 19 C -0.30 -8.41 9.68 -14.94 -0.14 -8.55 16 20 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.73 13.05 55.50 0.72 -24.00 16 23 Si 0.93 21.18 29.55 -169.99 -5.02 16.15 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 27 C -0.21 -2.07 10.06 -26.73 -0.27 -2.33 16 28 C -0.17 -1.53 9.58 -26.73 -0.26 -1.79 16 29 H 0.06 0.37 6.70 -51.93 -0.35 0.03 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.44 6.76 -51.93 -0.35 0.09 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.51 7.83 -51.93 -0.41 0.10 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.59 7.85 -51.93 -0.41 0.18 16 37 H 0.07 0.81 7.51 -51.93 -0.39 0.42 16 38 H 0.06 0.36 7.51 -51.93 -0.39 -0.03 16 39 H 0.07 0.43 6.68 -51.92 -0.35 0.08 16 40 H 0.06 0.46 6.78 -51.93 -0.35 0.11 16 41 H 0.40 3.92 7.44 -40.82 -0.30 3.62 16 42 H 0.07 0.81 7.89 -51.93 -0.41 0.40 16 43 H 0.08 1.18 6.47 -51.93 -0.34 0.85 16 44 H 0.35 5.58 8.34 -39.30 -0.33 5.25 16 45 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.09 1.50 6.58 -51.93 -0.34 1.16 16 47 H 0.39 9.65 7.90 -40.82 -0.32 9.32 16 48 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 49 H 0.10 0.88 8.04 -51.93 -0.42 0.46 16 50 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 51 H 0.10 0.90 8.14 -51.92 -0.42 0.48 16 52 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 409.58 15.07 6.17 6.17 Total: -1.00 -32.48 409.58 -9.17 -41.66 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: -8.68 Total: 17.33 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -1.54 Total: 0.34 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: -0.27 Total: -57.13 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: 0.17 Total: -24.52 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.48 -9.17 -41.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323541236.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.921 kcal (2) G-P(sol) polarization free energy of solvation -32.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds