Wall clock time and date at job start Tue Mar 31 2020 20:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.52997 * 109.47482 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47143 * 60.00181 * 5 4 2 7 7 C 1.53000 * 109.46911 * 299.99808 * 6 5 4 8 8 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 9 9 H 1.09002 * 109.46716 * 60.00091 * 8 2 1 10 10 C 1.50701 * 109.47274 * 300.00322 * 8 2 1 11 11 O 1.21288 * 119.99860 * 359.97438 * 10 8 2 12 12 N 1.34780 * 120.00311 * 179.97438 * 10 8 2 13 13 C 1.46497 * 119.99654 * 0.02562 * 12 10 8 14 14 C 1.46492 * 120.00096 * 179.97438 * 12 10 8 15 15 C 1.53942 * 113.73585 * 218.76703 * 14 12 10 16 16 N 1.48181 * 86.10253 * 221.96034 * 15 14 12 17 17 C 1.46897 * 111.07126 * 137.51981 * 16 15 14 18 18 C 1.50711 * 109.47041 * 90.56462 * 17 16 15 19 19 O 1.21285 * 119.99945 * 0.02562 * 18 17 16 20 20 N 1.34773 * 119.99805 * 179.97438 * 18 17 16 21 21 C 1.37097 * 120.00001 * 179.97438 * 20 18 17 22 22 H 1.08006 * 119.99792 * 359.97438 * 21 20 18 23 23 C 1.38943 * 120.00242 * 180.02562 * 21 20 18 24 24 N 1.31411 * 120.00090 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99986 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47475 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47202 * 119.99644 * 25 23 21 28 28 H 1.48504 * 109.46771 * 239.99507 * 25 23 21 29 29 C 1.47961 * 90.80142 * 24.60105 * 16 15 14 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 33 33 H 1.09002 * 109.47103 * 300.00247 * 4 2 1 34 34 H 1.09001 * 109.47066 * 60.00169 * 4 2 1 35 35 H 1.09004 * 109.47261 * 180.02562 * 5 4 2 36 36 H 1.09002 * 109.47153 * 300.00216 * 5 4 2 37 37 H 1.08992 * 109.47060 * 59.99979 * 6 5 4 38 38 H 1.09004 * 109.47059 * 180.02562 * 6 5 4 39 39 H 1.09001 * 109.47194 * 179.97438 * 7 6 5 40 40 H 1.09002 * 109.47131 * 300.00452 * 7 6 5 41 41 H 1.08997 * 109.47335 * 89.99661 * 13 12 10 42 42 H 1.09005 * 109.47414 * 209.99924 * 13 12 10 43 43 H 1.09003 * 109.47306 * 329.99765 * 13 12 10 44 44 H 1.09002 * 112.93999 * 350.33799 * 14 12 10 45 45 H 1.09005 * 113.75428 * 336.24367 * 15 14 12 46 46 H 1.08999 * 113.75473 * 107.60218 * 15 14 12 47 47 H 1.09002 * 109.47418 * 210.56002 * 17 16 15 48 48 H 1.08996 * 109.47314 * 330.56288 * 17 16 15 49 49 H 0.97001 * 120.00461 * 0.02562 * 20 18 17 50 50 H 0.97001 * 119.99940 * 180.02562 * 24 23 21 51 51 H 1.09005 * 113.75723 * 221.08826 * 29 16 15 52 52 H 1.08990 * 113.86247 * 89.73437 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 3.5700 -0.7207 -1.2494 6 6 4.0806 -1.4416 -0.0002 7 6 3.5706 -0.7202 1.2490 8 6 2.0400 -0.7212 1.2493 9 1 1.6767 -1.7488 1.2493 10 6 1.5377 -0.0107 2.4797 11 8 0.8407 0.9756 2.3684 12 7 1.8628 -0.4714 3.7039 13 6 2.7052 -1.6625 3.8383 14 6 1.3750 0.2195 4.9000 15 6 2.4068 0.2878 6.0403 16 7 1.2772 -0.0290 6.9455 17 6 1.6734 -1.0156 7.9592 18 6 2.1959 -0.3007 9.1787 19 8 2.2341 0.9114 9.2012 20 7 2.6199 -1.0082 10.2445 21 6 3.0958 -0.3579 11.3537 22 1 3.1313 0.7214 11.3731 23 6 3.5334 -1.0873 12.4523 24 7 3.4907 -2.4005 12.4285 25 14 4.1811 -0.2011 13.9639 26 1 4.1244 1.2658 13.7400 27 1 3.3473 -0.5553 15.1405 28 1 5.5870 -0.6096 14.2125 29 6 0.5420 -0.6751 5.8358 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.6767 -1.7489 -1.2491 34 1 1.6768 -0.2074 -2.1391 35 1 3.9334 -1.2342 -2.1397 36 1 3.9330 0.3071 -1.2497 37 1 3.7176 -2.4693 0.0000 38 1 5.1706 -1.4408 -0.0002 39 1 3.9339 -1.2340 2.1390 40 1 3.9335 0.3076 1.2487 41 1 3.7531 -1.3645 3.8720 42 1 2.4471 -2.1882 4.7577 43 1 2.5420 -2.3211 2.9852 44 1 0.9051 1.1771 4.6755 45 1 3.1650 -0.4940 5.9939 46 1 2.8277 1.2817 6.1926 47 1 0.8094 -1.6203 8.2350 48 1 2.4533 -1.6600 7.5537 49 1 2.5891 -1.9776 10.2267 50 1 3.7959 -2.9097 13.1957 51 1 -0.5243 -0.4491 5.8250 52 1 0.7522 -1.7391 5.7281 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323969862.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:37 Heat of formation + Delta-G solvation = -43.196485 kcal Electronic energy + Delta-G solvation = -29968.592956 eV Core-core repulsion = 25968.787698 eV Total energy + Delta-G solvation = -3999.805258 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.13690 -39.80426 -38.02961 -37.51591 -35.33808 -33.87773 -32.73334 -31.66753 -31.21711 -29.77176 -27.44923 -26.84767 -26.11289 -25.46457 -24.12621 -23.11358 -21.75481 -20.63200 -19.78820 -19.36153 -18.97017 -17.90777 -17.31563 -16.69019 -16.09705 -15.88236 -15.42518 -15.15381 -14.88602 -14.66726 -14.54149 -14.46104 -14.06580 -13.91858 -13.83603 -13.31408 -13.14776 -13.01772 -12.69184 -12.59733 -12.56111 -12.52123 -12.18842 -12.02215 -11.70526 -11.66481 -11.54366 -11.43671 -11.20542 -11.11981 -11.00826 -10.88436 -10.76325 -10.67748 -10.37778 -10.33924 -10.21522 -9.60126 -9.50703 -8.79548 -8.76829 -8.19258 -7.95597 -6.41443 -3.81988 2.42443 2.71531 3.16437 3.26923 3.34548 3.89716 3.94880 4.12906 4.21994 4.26602 4.33082 4.49166 4.64581 4.71557 4.75027 4.80733 4.87157 4.96378 5.00524 5.03304 5.08867 5.14067 5.16967 5.21399 5.28261 5.33347 5.39907 5.42480 5.43769 5.61344 5.62818 5.64739 5.65638 5.71937 5.72537 5.74564 5.81156 5.87822 5.89373 5.95017 6.07116 6.15722 6.22656 6.28054 6.37196 6.53105 7.09317 7.21185 7.55908 8.01227 8.06923 8.62724 9.19272 9.55151 10.07666 10.76548 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.026642 B = 0.001986 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.714810 B =14092.467757 C =14582.992249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.069 4.069 3 H 0.076 0.924 4 C -0.114 4.114 5 C -0.123 4.123 6 C -0.117 4.117 7 C -0.125 4.125 8 C -0.100 4.100 9 H 0.095 0.905 10 C 0.519 3.481 11 O -0.532 6.532 12 N -0.606 5.606 13 C 0.071 3.929 14 C 0.116 3.884 15 C 0.003 3.997 16 N -0.444 5.444 17 C 0.013 3.987 18 C 0.446 3.554 19 O -0.574 6.574 20 N -0.568 5.568 21 C -0.296 4.296 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 C -0.013 4.013 30 H 0.045 0.955 31 H 0.050 0.950 32 H 0.083 0.917 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.129 0.871 45 H 0.072 0.928 46 H 0.097 0.903 47 H 0.089 0.911 48 H 0.056 0.944 49 H 0.391 0.609 50 H 0.270 0.730 51 H 0.094 0.906 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.697 -4.607 -27.265 27.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.088 4.088 3 H 0.094 0.906 4 C -0.152 4.152 5 C -0.160 4.160 6 C -0.154 4.154 7 C -0.162 4.162 8 C -0.121 4.121 9 H 0.113 0.887 10 C 0.308 3.692 11 O -0.408 6.408 12 N -0.339 5.339 13 C -0.072 4.072 14 C 0.012 3.988 15 C -0.127 4.127 16 N -0.167 5.167 17 C -0.119 4.119 18 C 0.231 3.769 19 O -0.456 6.456 20 N -0.205 5.205 21 C -0.426 4.426 22 H 0.121 0.879 23 C -0.181 4.181 24 N -0.545 5.545 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 C -0.143 4.143 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.102 0.898 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.095 0.905 44 H 0.147 0.853 45 H 0.090 0.910 46 H 0.115 0.885 47 H 0.107 0.893 48 H 0.074 0.926 49 H 0.224 0.776 50 H 0.080 0.920 51 H 0.112 0.888 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.294 -2.874 -26.750 26.935 hybrid contribution 0.804 -1.258 0.626 1.619 sum -0.490 -4.132 -26.124 26.453 Atomic orbital electron populations 1.22071 0.94679 1.01409 1.03522 1.20898 0.96227 0.99511 0.92166 0.90599 1.21624 0.95348 1.00663 0.97553 1.21573 0.95782 1.00920 0.97729 1.21516 1.00436 0.99294 0.94161 1.21831 0.92924 1.02125 0.99331 1.21396 0.97063 1.00626 0.92992 0.88707 1.20740 0.79684 0.84445 0.84324 1.90636 1.37704 1.26359 1.86139 1.47936 1.51178 1.28937 1.05818 1.21982 0.94771 0.87315 1.03143 1.23162 0.95633 0.97661 0.82296 1.24455 0.94223 1.03580 0.90440 1.68373 1.12462 1.30797 1.05023 1.22458 1.00497 0.94286 0.94637 1.19671 0.84370 0.88230 0.84620 1.90531 1.59138 1.13676 1.82297 1.41878 1.56103 1.09034 1.13498 1.19747 1.37547 0.93662 0.91651 0.87902 1.25251 0.97860 0.95519 0.99427 1.69618 1.47997 1.05020 1.31888 0.85806 0.78203 0.79638 0.80744 1.19218 1.20757 1.20798 1.24480 1.00934 0.97712 0.91175 0.93601 0.93065 0.89786 0.91980 0.91733 0.91997 0.91906 0.91810 0.91620 0.90277 0.91352 0.91807 0.90956 0.90536 0.85302 0.91005 0.88456 0.89325 0.92566 0.77595 0.91984 0.88797 0.91170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 8.87 37.16 0.33 -1.12 16 2 C -0.07 -0.57 1.89 -90.63 -0.17 -0.74 16 3 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 4 C -0.11 -0.72 5.20 -26.74 -0.14 -0.86 16 5 C -0.12 -0.70 5.92 -26.73 -0.16 -0.86 16 6 C -0.12 -0.63 5.92 -26.73 -0.16 -0.79 16 7 C -0.12 -0.83 4.84 -26.70 -0.13 -0.96 16 8 C -0.10 -0.79 1.26 -91.74 -0.12 -0.90 16 9 H 0.09 0.64 7.40 -51.93 -0.38 0.26 16 10 C 0.52 5.75 6.78 -10.98 -0.07 5.68 16 11 O -0.53 -7.71 13.14 5.55 0.07 -7.64 16 12 N -0.61 -6.21 3.09 -175.27 -0.54 -6.75 16 13 C 0.07 0.51 7.39 59.85 0.44 0.95 16 14 C 0.12 1.47 4.39 -69.62 -0.31 1.16 16 15 C 0.00 0.04 7.41 -2.63 -0.02 0.02 16 16 N -0.44 -7.37 5.65 -239.67 -1.35 -8.72 16 17 C 0.01 0.23 5.28 -4.97 -0.03 0.21 16 18 C 0.45 10.65 7.83 -10.98 -0.09 10.56 16 19 O -0.57 -15.97 16.01 5.55 0.09 -15.88 16 20 N -0.57 -14.43 5.29 -10.96 -0.06 -14.48 16 21 C -0.30 -8.32 9.68 -14.94 -0.14 -8.46 16 22 H 0.10 3.05 7.16 -52.48 -0.38 2.67 16 23 C 0.02 0.55 5.50 -17.47 -0.10 0.46 16 24 N -0.90 -24.55 13.05 55.50 0.72 -23.83 16 25 Si 0.93 21.15 29.55 -169.99 -5.02 16.13 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 28 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 29 C -0.01 -0.16 7.46 -2.76 -0.02 -0.18 16 30 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.99 5.51 -51.93 -0.29 0.70 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.08 0.46 4.53 -51.93 -0.24 0.23 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.42 6.95 -51.93 -0.36 0.06 16 42 H 0.07 0.52 6.35 -51.93 -0.33 0.19 16 43 H 0.08 0.40 6.01 -51.93 -0.31 0.09 16 44 H 0.13 1.86 7.22 -51.93 -0.37 1.49 16 45 H 0.07 0.92 6.17 -51.93 -0.32 0.60 16 46 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 47 H 0.09 1.41 8.08 -51.93 -0.42 0.99 16 48 H 0.06 0.85 7.39 -51.93 -0.38 0.47 16 49 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 50 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 51 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 52 H 0.07 0.75 6.63 -51.93 -0.34 0.40 16 LS Contribution 396.02 15.07 5.97 5.97 Total: -1.00 -33.27 396.02 -9.65 -42.92 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -8.66 Total: 8.15 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: -0.87 Total: 4.14 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: -1.23 Total: -53.78 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: 0.16 Total: -23.52 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.27 -9.65 -42.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323969862.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.277 kcal (2) G-P(sol) polarization free energy of solvation -33.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds