Wall clock time and date at job start Tue Mar 31 2020 22:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.52400 * 2 1 4 4 C 1.53038 * 109.49743 * 120.08984 * 2 1 3 5 5 C 1.53032 * 109.54201 * 58.58569 * 4 2 1 6 6 C 1.53194 * 109.31575 * 61.36755 * 5 4 2 7 7 N 1.46926 * 108.77268 * 305.36600 * 6 5 4 8 8 C 1.34777 * 120.63140 * 233.63267 * 7 6 5 9 9 O 1.21352 * 120.00288 * 173.48183 * 8 7 6 10 10 C 1.49453 * 120.00046 * 353.47810 * 8 7 6 11 11 O 1.21354 * 119.99686 * 6.37396 * 10 8 7 12 12 N 1.34775 * 119.99900 * 186.36783 * 10 8 7 13 13 C 1.46925 * 120.63166 * 6.28739 * 12 10 8 14 14 C 1.52757 * 109.00524 * 233.58342 * 13 12 10 15 15 C 1.53045 * 109.38646 * 305.58908 * 14 13 12 16 16 C 1.50700 * 109.45125 * 181.25882 * 15 14 13 17 17 H 1.08002 * 119.99765 * 236.42286 * 16 15 14 18 18 C 1.37874 * 120.00087 * 56.41572 * 16 15 14 19 19 N 1.31513 * 120.00120 * 5.69911 * 18 16 15 20 20 Si 1.86804 * 119.99939 * 185.69704 * 18 16 15 21 21 H 1.48496 * 109.47265 * 95.00018 * 20 18 16 22 22 H 1.48501 * 109.47256 * 215.00196 * 20 18 16 23 23 H 1.48506 * 109.46850 * 335.00243 * 20 18 16 24 24 C 1.53036 * 109.53680 * 61.24238 * 15 14 13 25 25 C 1.46925 * 120.62800 * 186.56824 * 12 10 8 26 26 C 1.46932 * 118.74072 * 53.60544 * 7 6 5 27 27 H 1.09003 * 109.58281 * 66.32351 * 26 7 6 28 28 C 1.52993 * 109.58747 * 186.60456 * 26 7 6 29 29 N 1.46903 * 109.47013 * 181.74989 * 28 26 7 30 30 H 1.08994 * 109.46920 * 299.91019 * 1 2 3 31 31 H 1.09001 * 109.47091 * 59.91705 * 1 2 3 32 32 H 1.09003 * 109.47008 * 179.91205 * 1 2 3 33 33 H 1.09001 * 109.45931 * 298.55985 * 4 2 1 34 34 H 1.09009 * 109.45721 * 178.60796 * 4 2 1 35 35 H 1.09001 * 109.50093 * 181.31674 * 5 4 2 36 36 H 1.09005 * 109.49788 * 301.38121 * 5 4 2 37 37 H 1.08997 * 109.58721 * 65.15028 * 6 5 4 38 38 H 1.09000 * 109.58806 * 185.44313 * 6 5 4 39 39 H 1.08996 * 109.58791 * 353.41813 * 13 12 10 40 40 H 1.09000 * 109.58309 * 113.84845 * 13 12 10 41 41 H 1.09007 * 109.56634 * 185.55239 * 14 13 12 42 42 H 1.09005 * 109.38982 * 65.51646 * 14 13 12 43 43 H 1.08997 * 109.45615 * 301.21810 * 15 14 13 44 44 H 0.97000 * 119.99879 * 179.97438 * 19 18 16 45 45 H 1.08998 * 109.49696 * 178.68726 * 24 15 14 46 46 H 1.08995 * 109.49746 * 58.58500 * 24 15 14 47 47 H 1.08996 * 109.58694 * 246.15786 * 25 12 10 48 48 H 1.09001 * 109.58739 * 6.44063 * 25 12 10 49 49 H 1.08999 * 109.47832 * 301.74914 * 28 26 7 50 50 H 1.09003 * 109.47105 * 61.75213 * 28 26 7 51 51 H 1.00895 * 111.00163 * 61.09062 * 29 28 26 52 52 H 1.00901 * 110.99837 * 185.03692 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0408 -0.7233 1.2482 5 6 1.5030 -2.1559 1.2657 6 6 2.0140 -2.9041 0.0305 7 7 1.6516 -2.1381 -1.1698 8 6 0.9739 -2.7217 -2.1782 9 8 0.5772 -2.0528 -3.1097 10 6 0.7112 -4.1926 -2.1491 11 8 1.0045 -4.8421 -1.1669 12 7 0.1484 -4.7978 -3.2138 13 6 -0.0864 -4.0550 -4.4595 14 6 -1.5545 -4.1998 -4.8559 15 6 -1.9162 -5.6850 -4.9315 16 6 -3.3559 -5.8301 -5.3525 17 1 -4.0470 -6.3813 -4.7321 18 6 -3.7908 -5.2590 -6.5297 19 7 -2.9287 -4.6847 -7.3398 20 14 -5.6048 -5.3012 -6.9739 21 1 -6.2512 -4.0381 -6.5360 22 1 -5.7511 -5.4482 -8.4443 23 1 -6.2542 -6.4510 -6.2944 24 6 -1.7191 -6.3303 -3.5579 25 6 -0.2477 -6.2111 -3.1487 26 6 2.0413 -0.7237 -1.2497 27 1 3.1274 -0.6463 -1.3007 28 6 1.4229 -0.0910 -2.4979 29 7 1.8480 1.3116 -2.5978 30 1 -0.3633 0.5124 0.8907 31 1 -0.3633 0.5151 -0.8892 32 1 -0.3633 -1.0277 -0.0016 33 1 1.6988 -0.1961 2.1389 34 1 3.1306 -0.7445 1.2351 35 1 1.8481 -2.6631 2.1668 36 1 0.4132 -2.1356 1.2544 37 1 3.0979 -3.0043 0.0864 38 1 1.5573 -3.8928 -0.0128 39 1 0.1471 -3.0014 -4.3063 40 1 0.5445 -4.4600 -5.2508 41 1 -1.7175 -3.7357 -5.8287 42 1 -2.1808 -3.7104 -4.1099 43 1 -1.2733 -6.1785 -5.6603 44 1 -3.2346 -4.2833 -8.1682 45 1 -1.9991 -7.3825 -3.6068 46 1 -2.3433 -5.8209 -2.8238 47 1 0.3698 -6.7954 -3.8308 48 1 -0.1182 -6.5804 -2.1313 49 1 1.7535 -0.6347 -3.3828 50 1 0.3360 -0.1371 -2.4281 51 1 2.8512 1.3803 -2.6815 52 1 1.3885 1.7748 -3.3674 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345482772.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:16 Heat of formation + Delta-G solvation = -43.124231 kcal Electronic energy + Delta-G solvation = -31947.796052 eV Core-core repulsion = 27947.993927 eV Total energy + Delta-G solvation = -3999.802125 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.53970 -40.66520 -39.06822 -38.57786 -35.75313 -35.41977 -34.38120 -33.03437 -32.05542 -31.72180 -28.89133 -28.16334 -27.16606 -25.60645 -25.04957 -24.19115 -23.49310 -22.53898 -21.57141 -20.36556 -19.60573 -18.51876 -18.09895 -18.01989 -17.47225 -16.93205 -16.62127 -16.44950 -16.30164 -16.03133 -15.66290 -15.38264 -15.23811 -14.85178 -14.78312 -14.55644 -14.51749 -14.30000 -14.19449 -13.85600 -13.52255 -13.33984 -13.20668 -13.11276 -12.87677 -12.79401 -12.59669 -12.49004 -12.17171 -12.02850 -11.97570 -11.88571 -11.75903 -11.52006 -11.35598 -11.12889 -11.02082 -10.58472 -10.41101 -9.94665 -9.74586 -9.62232 -9.21635 -8.09548 -6.22012 0.27702 1.23024 1.39507 1.41664 1.50817 2.07250 2.33372 2.42737 3.04715 3.17213 3.58763 3.76898 3.91001 3.95384 4.09007 4.10900 4.22418 4.26412 4.30927 4.35418 4.47129 4.51121 4.55067 4.60527 4.64012 4.74580 4.76764 4.86087 4.91033 4.97031 5.00167 5.02205 5.06611 5.17581 5.18272 5.18990 5.24380 5.30715 5.34330 5.42227 5.47563 5.51713 5.61980 5.69212 5.95941 5.97752 6.10338 6.21792 6.32397 6.37143 6.62466 6.69041 6.87591 6.91814 7.45244 8.94527 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015718 B = 0.003290 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.007146 B = 8508.905497 C = 9352.020672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.084 4.084 3 H 0.100 0.900 4 C -0.114 4.114 5 C -0.131 4.131 6 C 0.047 3.953 7 N -0.562 5.562 8 C 0.505 3.495 9 O -0.517 6.517 10 C 0.501 3.499 11 O -0.533 6.533 12 N -0.565 5.565 13 C 0.058 3.942 14 C -0.106 4.106 15 C 0.042 3.958 16 C -0.535 4.535 17 H 0.050 0.950 18 C 0.016 3.984 19 N -0.912 5.912 20 Si 0.949 3.051 21 H -0.279 1.279 22 H -0.283 1.283 23 H -0.269 1.269 24 C -0.113 4.113 25 C 0.112 3.888 26 C 0.146 3.854 27 H 0.089 0.911 28 C 0.071 3.929 29 N -0.849 5.849 30 H 0.062 0.938 31 H 0.047 0.953 32 H 0.034 0.966 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.054 0.946 37 H 0.080 0.920 38 H 0.142 0.858 39 H 0.150 0.850 40 H 0.055 0.945 41 H 0.074 0.926 42 H 0.019 0.981 43 H 0.002 0.998 44 H 0.261 0.739 45 H 0.072 0.928 46 H 0.043 0.957 47 H 0.077 0.923 48 H 0.097 0.903 49 H 0.035 0.965 50 H 0.067 0.933 51 H 0.344 0.656 52 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.136 9.453 15.709 23.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.103 4.103 3 H 0.118 0.882 4 C -0.152 4.152 5 C -0.169 4.169 6 C -0.073 4.073 7 N -0.295 5.295 8 C 0.288 3.712 9 O -0.396 6.396 10 C 0.285 3.715 11 O -0.415 6.415 12 N -0.295 5.295 13 C -0.062 4.062 14 C -0.144 4.144 15 C 0.024 3.976 16 C -0.573 4.573 17 H 0.068 0.932 18 C -0.183 4.183 19 N -0.552 5.552 20 Si 0.775 3.225 21 H -0.205 1.205 22 H -0.208 1.208 23 H -0.194 1.194 24 C -0.151 4.151 25 C -0.010 4.010 26 C 0.044 3.956 27 H 0.107 0.893 28 C -0.059 4.059 29 N -0.381 5.381 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.111 0.889 36 H 0.073 0.927 37 H 0.098 0.902 38 H 0.158 0.842 39 H 0.166 0.834 40 H 0.073 0.927 41 H 0.092 0.908 42 H 0.038 0.962 43 H 0.020 0.980 44 H 0.070 0.930 45 H 0.090 0.910 46 H 0.062 0.938 47 H 0.095 0.905 48 H 0.115 0.885 49 H 0.053 0.947 50 H 0.085 0.915 51 H 0.157 0.843 52 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 13.767 9.601 16.279 23.382 hybrid contribution -0.971 -0.467 -1.803 2.100 sum 12.797 9.133 14.477 21.372 Atomic orbital electron populations 1.21819 0.96027 1.00457 1.01604 1.21348 0.95547 1.00205 0.93178 0.88203 1.21621 1.01093 0.94954 0.97492 1.21926 1.00826 0.96507 0.97642 1.23325 1.02123 0.99478 0.82360 1.48108 1.52181 1.11655 1.17508 1.20103 0.79611 0.88176 0.83287 1.90402 1.50992 1.63160 1.35017 1.20327 0.79129 0.88885 0.83184 1.90264 1.53423 1.65899 1.31877 1.48244 1.55892 1.12371 1.13023 1.23203 0.97573 1.01778 0.83672 1.21579 0.92849 0.99436 1.00557 1.18652 0.94934 0.92401 0.91619 1.21564 0.96249 1.33604 1.05927 0.93158 1.25669 1.01235 0.95199 0.96158 1.69988 1.34962 1.38732 1.11485 0.85685 0.81119 0.78386 0.77317 1.20522 1.20823 1.19355 1.21851 0.94259 1.00958 0.98040 1.21854 0.95879 0.80175 1.03089 1.21599 0.99211 0.78077 0.96708 0.89270 1.22256 1.00352 0.88118 0.95198 1.58709 1.12489 1.14455 1.52419 0.91849 0.93425 0.94694 0.90514 0.90568 0.88945 0.92728 0.90194 0.84213 0.83415 0.92706 0.90766 0.96173 0.98015 0.92999 0.90983 0.93770 0.90467 0.88515 0.94723 0.91458 0.84300 0.83778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.20 71.98 0.59 -2.40 16 2 C -0.08 -1.44 2.60 -10.72 -0.03 -1.47 16 3 H 0.10 1.60 7.86 -2.39 -0.02 1.58 16 4 C -0.11 -1.58 5.43 30.62 0.17 -1.41 16 5 C -0.13 -2.17 5.74 30.67 0.18 -2.00 16 6 C 0.05 0.97 6.18 86.36 0.53 1.51 16 7 N -0.56 -13.45 2.41 -796.57 -1.92 -15.37 16 8 C 0.50 15.44 7.56 87.27 0.66 16.10 16 9 O -0.52 -17.42 8.50 -3.25 -0.03 -17.44 16 10 C 0.50 16.76 7.68 87.27 0.67 17.43 16 11 O -0.53 -17.56 12.46 -3.26 -0.04 -17.60 16 12 N -0.56 -20.53 2.98 -821.32 -2.45 -22.98 16 13 C 0.06 2.32 6.25 86.22 0.54 2.86 16 14 C -0.11 -5.08 5.10 30.53 0.16 -4.92 16 15 C 0.04 2.11 2.09 -11.51 -0.02 2.08 16 16 C -0.54 -29.53 8.60 25.60 0.22 -29.31 16 17 H 0.05 2.74 7.75 -2.91 -0.02 2.72 16 18 C 0.02 0.90 5.22 84.65 0.44 1.34 16 19 N -0.91 -52.25 11.30 21.45 0.24 -52.00 16 20 Si 0.95 43.80 29.54 68.60 2.03 45.83 16 21 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 22 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 23 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 24 C -0.11 -4.61 5.30 30.67 0.16 -4.45 16 25 C 0.11 3.89 6.42 86.36 0.55 4.45 16 26 C 0.15 2.93 2.87 44.97 0.13 3.06 16 27 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 28 C 0.07 1.64 4.18 86.30 0.36 2.00 16 29 N -0.85 -14.62 9.06 -186.72 -1.69 -16.31 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.05 1.14 6.31 -2.39 -0.02 1.13 16 32 H 0.03 0.86 5.97 -2.39 -0.01 0.85 16 33 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 35 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.05 1.09 6.34 -2.38 -0.02 1.07 16 37 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.14 3.57 3.88 -78.15 -0.30 3.27 16 39 H 0.15 5.80 3.76 -80.49 -0.30 5.50 16 40 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.07 4.02 5.98 -2.38 -0.01 4.01 16 42 H 0.02 0.99 8.14 -2.38 -0.02 0.97 16 43 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 44 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 45 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 46 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 47 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 48 H 0.10 3.09 7.05 -2.39 -0.02 3.07 16 49 H 0.03 0.95 6.35 -2.39 -0.02 0.93 16 50 H 0.07 1.93 5.20 -2.39 -0.01 1.92 16 51 H 0.34 4.63 9.05 -89.70 -0.81 3.81 16 52 H 0.35 5.73 9.08 -89.69 -0.81 4.92 16 Total: -1.00 -61.17 377.54 0.19 -60.97 By element: Atomic # 1 Polarization: 31.29 SS G_CDS: -1.26 Total: 30.03 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 5.31 Total: 4.87 kcal Atomic # 7 Polarization: -100.85 SS G_CDS: -5.81 Total: -106.66 kcal Atomic # 8 Polarization: -34.98 SS G_CDS: -0.07 Total: -35.05 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -61.17 0.19 -60.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345482772.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.850 kcal (2) G-P(sol) polarization free energy of solvation -61.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds