Wall clock time and date at job start Tue Mar 31 2020 22:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.51937 * 2 1 4 4 C 1.53074 * 109.39078 * 120.16328 * 2 1 3 5 5 C 1.53043 * 109.65609 * 58.72722 * 4 2 1 6 6 C 1.53189 * 109.31292 * 61.29842 * 5 4 2 7 7 N 1.46925 * 108.77751 * 305.36420 * 6 5 4 8 8 C 1.34776 * 120.63340 * 233.63221 * 7 6 5 9 9 O 1.21284 * 120.00025 * 185.34351 * 8 7 6 10 10 C 1.50700 * 119.99903 * 5.34149 * 8 7 6 11 11 N 1.46496 * 109.46813 * 180.02562 * 10 8 7 12 12 C 1.46762 * 124.35047 * 90.00613 * 11 10 8 13 13 C 1.54480 * 105.47393 * 197.01207 * 12 11 10 14 14 C 1.54627 * 101.76446 * 334.58045 * 13 12 11 15 15 C 1.34420 * 124.34945 * 269.69530 * 11 10 8 16 16 O 1.21272 * 124.94065 * 359.58490 * 15 11 10 17 17 C 1.46927 * 118.73590 * 53.60862 * 7 6 5 18 18 H 1.09001 * 109.58693 * 66.32139 * 17 7 6 19 19 C 1.53004 * 109.58595 * 186.60278 * 17 7 6 20 20 C 1.53001 * 109.46765 * 178.19701 * 19 17 7 21 21 N 1.46508 * 109.46690 * 174.92825 * 20 19 17 22 22 C 1.36936 * 119.99770 * 179.72235 * 21 20 19 23 23 H 1.08001 * 120.00241 * 0.27769 * 22 21 20 24 24 C 1.38811 * 119.99930 * 180.27829 * 22 21 20 25 25 N 1.31615 * 119.99966 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 120.00204 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.46709 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.47405 * 119.99494 * 26 24 22 29 29 H 1.48497 * 109.46799 * 239.99659 * 26 24 22 30 30 H 1.08999 * 109.46728 * 180.08188 * 1 2 3 31 31 H 1.08998 * 109.47310 * 300.08379 * 1 2 3 32 32 H 1.08998 * 109.47283 * 60.08290 * 1 2 3 33 33 H 1.08997 * 109.45317 * 298.63631 * 4 2 1 34 34 H 1.08995 * 109.33948 * 178.74352 * 4 2 1 35 35 H 1.09003 * 109.49712 * 301.35022 * 5 4 2 36 36 H 1.09000 * 109.50111 * 181.25171 * 5 4 2 37 37 H 1.09002 * 109.58674 * 185.57646 * 6 5 4 38 38 H 1.09000 * 109.58756 * 65.15106 * 6 5 4 39 39 H 1.09004 * 109.46911 * 300.00129 * 10 8 7 40 40 H 1.08995 * 109.47061 * 60.00071 * 10 8 7 41 41 H 1.09007 * 110.24525 * 316.01068 * 12 11 10 42 42 H 1.08994 * 110.25137 * 78.00818 * 12 11 10 43 43 H 1.09001 * 110.96996 * 92.70130 * 13 12 11 44 44 H 1.09008 * 110.97063 * 216.42213 * 13 12 11 45 45 H 1.08999 * 110.48338 * 143.47420 * 14 13 12 46 46 H 1.08994 * 110.48634 * 265.98529 * 14 13 12 47 47 H 1.08999 * 109.46848 * 58.20202 * 19 17 7 48 48 H 1.08995 * 109.47317 * 298.19475 * 19 17 7 49 49 H 1.08994 * 109.47498 * 54.93246 * 20 19 17 50 50 H 1.09000 * 109.47298 * 294.92512 * 20 19 17 51 51 H 0.96998 * 119.99847 * 0.02562 * 21 20 19 52 52 H 0.97003 * 120.00233 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0382 -0.7255 1.2484 5 6 1.5034 -2.1594 1.2641 6 6 2.0173 -2.9053 0.0286 7 7 1.6545 -2.1390 -1.1713 8 6 0.9792 -2.7231 -2.1810 9 8 0.7702 -2.1091 -3.2058 10 6 0.4839 -4.1390 -2.0364 11 7 -0.2130 -4.5399 -3.2611 12 6 0.4361 -5.1783 -4.4121 13 6 -0.5537 -5.0143 -5.5868 14 6 -1.9048 -4.8890 -4.8454 15 6 -1.5303 -4.3756 -3.4725 16 8 -2.3052 -3.8848 -2.6792 17 6 2.0414 -0.7238 -1.2495 18 1 3.1273 -0.6441 -1.2992 19 6 1.4230 -0.0912 -2.4979 20 6 1.7904 1.3930 -2.5528 21 7 1.3016 1.9710 -3.8072 22 6 1.5102 3.2972 -4.0770 23 1 2.0389 3.9161 -3.3672 24 6 1.0420 3.8461 -5.2629 25 7 0.3981 3.0918 -6.1282 26 14 1.3271 5.6551 -5.6314 27 1 2.0707 6.2781 -4.5070 28 1 2.1175 5.7871 -6.8816 29 1 0.0192 6.3383 -5.7982 30 1 -0.3633 -1.0277 0.0015 31 1 -0.3634 0.5151 0.8892 32 1 -0.3634 0.5125 -0.8907 33 1 1.6941 -0.1998 2.1391 34 1 3.1279 -0.7446 1.2363 35 1 0.4136 -2.1413 1.2509 36 1 1.8485 -2.6666 2.1650 37 1 1.5608 -3.8940 -0.0173 38 1 3.1014 -3.0033 0.0856 39 1 1.3303 -4.8044 -1.8661 40 1 -0.2017 -4.1996 -1.1913 41 1 1.3776 -4.6782 -4.6395 42 1 0.6090 -6.2352 -4.2094 43 1 -0.3363 -4.1110 -6.1568 44 1 -0.5421 -5.8926 -6.2322 45 1 -2.5560 -4.1798 -5.3564 46 1 -2.3890 -5.8624 -4.7677 47 1 0.3387 -0.1958 -2.4590 48 1 1.8049 -0.5931 -3.3868 49 1 2.8737 1.5014 -2.5007 50 1 1.3324 1.9121 -1.7108 51 1 0.8265 1.4152 -4.4445 52 1 0.0713 3.4753 -6.9571 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479509129.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:26 Heat of formation + Delta-G solvation = -40.310344 kcal Electronic energy + Delta-G solvation = -31383.539103 eV Core-core repulsion = 27383.858997 eV Total energy + Delta-G solvation = -3999.680106 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.01288 -40.11663 -37.69779 -36.39364 -35.28030 -33.74785 -32.97332 -32.58628 -30.76494 -28.74179 -27.69573 -27.50410 -26.60495 -24.77383 -23.76458 -22.41893 -22.04156 -20.83100 -20.57471 -19.28763 -18.43848 -17.36956 -16.88761 -16.77473 -16.52260 -15.82683 -15.50345 -15.22627 -14.92180 -14.50473 -14.31176 -14.16210 -13.86616 -13.76340 -13.53584 -13.43309 -13.18505 -13.00538 -12.98763 -12.74738 -12.62206 -12.37541 -12.15693 -11.79580 -11.62120 -11.57411 -11.25321 -11.17734 -11.07468 -10.97899 -10.81486 -10.75624 -10.47265 -10.35925 -10.09926 -9.89401 -9.87657 -9.56581 -9.26509 -8.74862 -8.48731 -8.44571 -6.75610 -5.62733 -2.90560 2.38757 2.67191 2.75999 3.12757 3.50683 3.55326 3.58248 4.20413 4.32190 4.37729 4.56150 4.67951 4.70551 4.71795 4.78793 4.83995 4.90922 4.96751 5.04776 5.14767 5.17587 5.25560 5.35373 5.36440 5.56024 5.57202 5.61618 5.68049 5.68990 5.69367 5.77241 5.79863 5.88499 5.88732 6.07030 6.11918 6.17259 6.23492 6.31749 6.37474 6.47506 6.55322 6.64841 6.74104 6.94784 7.13373 7.25990 7.46913 7.81227 8.07765 8.31167 8.56289 9.66782 10.29330 10.64179 11.60396 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009037 B = 0.003827 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3097.790753 B = 7315.495352 C = 9648.639671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 H 0.088 0.912 4 C -0.114 4.114 5 C -0.138 4.138 6 C 0.108 3.892 7 N -0.608 5.608 8 C 0.491 3.509 9 O -0.502 6.502 10 C 0.107 3.893 11 N -0.605 5.605 12 C 0.106 3.894 13 C -0.131 4.131 14 C -0.153 4.153 15 C 0.524 3.476 16 O -0.530 6.530 17 C 0.158 3.842 18 H 0.069 0.931 19 C -0.117 4.117 20 C 0.149 3.851 21 N -0.731 5.731 22 C -0.235 4.235 23 H 0.069 0.931 24 C -0.017 4.017 25 N -0.932 5.932 26 Si 0.905 3.095 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.080 0.920 42 H 0.071 0.929 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.104 0.896 46 H 0.101 0.899 47 H 0.071 0.929 48 H 0.090 0.910 49 H 0.011 0.989 50 H 0.015 0.985 51 H 0.385 0.615 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.180 -23.713 12.464 26.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.124 4.124 3 H 0.106 0.894 4 C -0.152 4.152 5 C -0.177 4.177 6 C -0.015 4.015 7 N -0.343 5.343 8 C 0.276 3.724 9 O -0.376 6.376 10 C -0.019 4.019 11 N -0.339 5.339 12 C -0.017 4.017 13 C -0.169 4.169 14 C -0.193 4.193 15 C 0.312 3.688 16 O -0.405 6.405 17 C 0.055 3.945 18 H 0.087 0.913 19 C -0.155 4.155 20 C 0.020 3.980 21 N -0.375 5.375 22 C -0.366 4.366 23 H 0.087 0.913 24 C -0.212 4.212 25 N -0.582 5.582 26 Si 0.736 3.264 27 H -0.206 1.206 28 H -0.220 1.220 29 H -0.220 1.220 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.122 0.878 40 H 0.126 0.874 41 H 0.099 0.901 42 H 0.089 0.911 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.123 0.877 46 H 0.120 0.880 47 H 0.090 0.910 48 H 0.108 0.892 49 H 0.028 0.972 50 H 0.033 0.967 51 H 0.219 0.781 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.737 -22.939 12.391 26.216 hybrid contribution 0.149 0.896 -0.273 0.949 sum 2.886 -22.043 12.119 25.320 Atomic orbital electron populations 1.21874 0.94688 1.01612 1.02151 1.21578 0.96960 0.99971 0.93877 0.89429 1.21557 1.00332 0.95169 0.98119 1.21970 1.01971 0.96540 0.97179 1.21724 1.00281 0.94704 0.84836 1.48151 1.56876 1.11482 1.17818 1.21096 0.78406 0.89070 0.83819 1.90862 1.55135 1.63210 1.28348 1.21264 0.98457 0.93946 0.88230 1.47804 1.08712 1.60507 1.16849 1.22085 0.97400 0.97195 0.85006 1.22586 0.93206 1.04165 0.96903 1.22290 0.99236 1.03753 0.93990 1.20929 0.81668 0.77165 0.89043 1.90727 1.54262 1.44348 1.51196 1.21318 0.98370 0.78572 0.96203 0.91277 1.22269 1.01661 0.95234 0.96288 1.20795 0.95806 0.91405 0.89950 1.42365 1.68159 1.08533 1.18397 1.19290 1.29484 0.86240 1.01586 0.91317 1.24737 1.01374 0.97874 0.97258 1.69696 1.43418 1.34546 1.10506 0.86139 0.77234 0.85301 0.77704 1.20629 1.21958 1.21957 0.92933 0.93200 0.91479 0.91720 0.91925 0.90938 0.90987 0.90277 0.91197 0.87840 0.87430 0.90138 0.91113 0.89330 0.89228 0.87742 0.88030 0.91028 0.89201 0.97158 0.96695 0.78145 0.93705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 8.19 37.16 0.30 -1.78 16 2 C -0.10 -1.34 2.26 -90.48 -0.20 -1.55 16 3 H 0.09 1.21 6.86 -51.93 -0.36 0.85 16 4 C -0.11 -1.07 5.42 -26.67 -0.14 -1.22 16 5 C -0.14 -1.09 5.74 -26.61 -0.15 -1.24 16 6 C 0.11 0.84 6.35 -3.71 -0.02 0.82 16 7 N -0.61 -7.34 2.42 -165.22 -0.40 -7.74 16 8 C 0.49 6.86 7.60 -10.99 -0.08 6.78 16 9 O -0.50 -9.39 11.98 5.55 0.07 -9.33 16 10 C 0.11 1.10 4.77 -5.20 -0.02 1.08 16 11 N -0.60 -6.91 2.42 -173.79 -0.42 -7.33 16 12 C 0.11 0.87 7.35 -3.12 -0.02 0.85 16 13 C -0.13 -1.03 7.18 -25.10 -0.18 -1.21 16 14 C -0.15 -1.47 6.86 -26.74 -0.18 -1.65 16 15 C 0.52 7.25 8.02 -10.86 -0.09 7.16 16 16 O -0.53 -9.61 17.59 5.56 0.10 -9.51 16 17 C 0.16 2.27 2.73 -67.60 -0.18 2.09 16 18 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 19 C -0.12 -2.26 2.76 -26.73 -0.07 -2.33 16 20 C 0.15 3.32 5.68 -4.04 -0.02 3.29 16 21 N -0.73 -20.52 5.60 -59.90 -0.34 -20.85 16 22 C -0.23 -7.05 9.99 -15.06 -0.15 -7.20 16 23 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 24 C -0.02 -0.51 5.50 -17.43 -0.10 -0.61 16 25 N -0.93 -30.09 13.06 55.49 0.72 -29.36 16 26 Si 0.90 23.53 29.55 -169.99 -5.02 18.51 16 27 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 28 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 29 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 30 H 0.05 0.74 5.97 -51.93 -0.31 0.43 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 1.17 6.15 -51.93 -0.32 0.85 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.66 6.34 -51.93 -0.33 0.33 16 36 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.44 5.93 -51.93 -0.31 0.13 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.10 0.66 7.72 -51.93 -0.40 0.26 16 40 H 0.11 1.08 7.69 -51.93 -0.40 0.68 16 41 H 0.08 0.71 8.14 -51.92 -0.42 0.28 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.09 0.45 8.14 -51.92 -0.42 0.03 16 45 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 47 H 0.07 1.55 5.53 -51.93 -0.29 1.26 16 48 H 0.09 1.96 6.24 -51.93 -0.32 1.63 16 49 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 50 H 0.02 0.34 6.62 -51.93 -0.34 -0.01 16 51 H 0.38 11.62 7.67 -40.82 -0.31 11.30 16 52 H 0.25 7.82 8.31 -40.82 -0.34 7.48 16 LS Contribution 395.05 15.07 5.95 5.95 Total: -1.00 -38.70 395.05 -9.40 -48.10 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -8.73 Total: 8.28 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: -1.33 Total: 3.27 kcal Atomic # 7 Polarization: -64.86 SS G_CDS: -0.43 Total: -65.29 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: 0.16 Total: -18.84 kcal Atomic # 14 Polarization: 23.53 SS G_CDS: -5.02 Total: 18.51 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -38.70 -9.40 -48.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479509129.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.792 kcal (2) G-P(sol) polarization free energy of solvation -38.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds