Wall clock time and date at job start Tue Mar 31 2020 22:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.51937 * 2 1 4 4 C 1.53074 * 109.39078 * 120.16328 * 2 1 3 5 5 C 1.53043 * 109.65609 * 58.72722 * 4 2 1 6 6 C 1.53189 * 109.31292 * 61.29842 * 5 4 2 7 7 N 1.46925 * 108.77751 * 305.36420 * 6 5 4 8 8 C 1.34776 * 120.63340 * 233.63221 * 7 6 5 9 9 O 1.21284 * 120.00025 * 185.34351 * 8 7 6 10 10 C 1.50700 * 119.99903 * 5.34149 * 8 7 6 11 11 N 1.46496 * 109.46813 * 180.02562 * 10 8 7 12 12 C 1.46762 * 124.35047 * 90.00613 * 11 10 8 13 13 C 1.54480 * 105.47393 * 197.01207 * 12 11 10 14 14 C 1.54627 * 101.76446 * 334.58045 * 13 12 11 15 15 C 1.34420 * 124.34945 * 269.69530 * 11 10 8 16 16 O 1.21272 * 124.94065 * 359.58490 * 15 11 10 17 17 C 1.46927 * 118.73590 * 53.60862 * 7 6 5 18 18 H 1.09001 * 109.58693 * 66.32139 * 17 7 6 19 19 C 1.53004 * 109.58595 * 186.60278 * 17 7 6 20 20 C 1.53001 * 109.46765 * 178.19701 * 19 17 7 21 21 N 1.46508 * 109.46690 * 174.92825 * 20 19 17 22 22 C 1.36936 * 119.99770 * 179.72235 * 21 20 19 23 23 H 1.08001 * 120.00241 * 0.27769 * 22 21 20 24 24 C 1.38811 * 119.99930 * 180.27829 * 22 21 20 25 25 N 1.31615 * 119.99966 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 120.00204 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.46709 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.47405 * 119.99494 * 26 24 22 29 29 H 1.48497 * 109.46799 * 239.99659 * 26 24 22 30 30 H 1.08999 * 109.46728 * 180.08188 * 1 2 3 31 31 H 1.08998 * 109.47310 * 300.08379 * 1 2 3 32 32 H 1.08998 * 109.47283 * 60.08290 * 1 2 3 33 33 H 1.08997 * 109.45317 * 298.63631 * 4 2 1 34 34 H 1.08995 * 109.33948 * 178.74352 * 4 2 1 35 35 H 1.09003 * 109.49712 * 301.35022 * 5 4 2 36 36 H 1.09000 * 109.50111 * 181.25171 * 5 4 2 37 37 H 1.09002 * 109.58674 * 185.57646 * 6 5 4 38 38 H 1.09000 * 109.58756 * 65.15106 * 6 5 4 39 39 H 1.09004 * 109.46911 * 300.00129 * 10 8 7 40 40 H 1.08995 * 109.47061 * 60.00071 * 10 8 7 41 41 H 1.09007 * 110.24525 * 316.01068 * 12 11 10 42 42 H 1.08994 * 110.25137 * 78.00818 * 12 11 10 43 43 H 1.09001 * 110.96996 * 92.70130 * 13 12 11 44 44 H 1.09008 * 110.97063 * 216.42213 * 13 12 11 45 45 H 1.08999 * 110.48338 * 143.47420 * 14 13 12 46 46 H 1.08994 * 110.48634 * 265.98529 * 14 13 12 47 47 H 1.08999 * 109.46848 * 58.20202 * 19 17 7 48 48 H 1.08995 * 109.47317 * 298.19475 * 19 17 7 49 49 H 1.08994 * 109.47498 * 54.93246 * 20 19 17 50 50 H 1.09000 * 109.47298 * 294.92512 * 20 19 17 51 51 H 0.96998 * 119.99847 * 0.02562 * 21 20 19 52 52 H 0.97003 * 120.00233 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0382 -0.7255 1.2484 5 6 1.5034 -2.1594 1.2641 6 6 2.0173 -2.9053 0.0286 7 7 1.6545 -2.1390 -1.1713 8 6 0.9792 -2.7231 -2.1810 9 8 0.7702 -2.1091 -3.2058 10 6 0.4839 -4.1390 -2.0364 11 7 -0.2130 -4.5399 -3.2611 12 6 0.4361 -5.1783 -4.4121 13 6 -0.5537 -5.0143 -5.5868 14 6 -1.9048 -4.8890 -4.8454 15 6 -1.5303 -4.3756 -3.4725 16 8 -2.3052 -3.8848 -2.6792 17 6 2.0414 -0.7238 -1.2495 18 1 3.1273 -0.6441 -1.2992 19 6 1.4230 -0.0912 -2.4979 20 6 1.7904 1.3930 -2.5528 21 7 1.3016 1.9710 -3.8072 22 6 1.5102 3.2972 -4.0770 23 1 2.0389 3.9161 -3.3672 24 6 1.0420 3.8461 -5.2629 25 7 0.3981 3.0918 -6.1282 26 14 1.3271 5.6551 -5.6314 27 1 2.0707 6.2781 -4.5070 28 1 2.1175 5.7871 -6.8816 29 1 0.0192 6.3383 -5.7982 30 1 -0.3633 -1.0277 0.0015 31 1 -0.3634 0.5151 0.8892 32 1 -0.3634 0.5125 -0.8907 33 1 1.6941 -0.1998 2.1391 34 1 3.1279 -0.7446 1.2363 35 1 0.4136 -2.1413 1.2509 36 1 1.8485 -2.6666 2.1650 37 1 1.5608 -3.8940 -0.0173 38 1 3.1014 -3.0033 0.0856 39 1 1.3303 -4.8044 -1.8661 40 1 -0.2017 -4.1996 -1.1913 41 1 1.3776 -4.6782 -4.6395 42 1 0.6090 -6.2352 -4.2094 43 1 -0.3363 -4.1110 -6.1568 44 1 -0.5421 -5.8926 -6.2322 45 1 -2.5560 -4.1798 -5.3564 46 1 -2.3890 -5.8624 -4.7677 47 1 0.3387 -0.1958 -2.4590 48 1 1.8049 -0.5931 -3.3868 49 1 2.8737 1.5014 -2.5007 50 1 1.3324 1.9121 -1.7108 51 1 0.8265 1.4152 -4.4445 52 1 0.0713 3.4753 -6.9571 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479509129.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:20 Heat of formation + Delta-G solvation = -67.414704 kcal Electronic energy + Delta-G solvation = -31384.714436 eV Core-core repulsion = 27383.858997 eV Total energy + Delta-G solvation = -4000.855439 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.57 seconds Orbital eigenvalues (eV) -42.03644 -41.09476 -38.80114 -37.41882 -37.03633 -35.12735 -34.14762 -33.67132 -32.55159 -30.06848 -28.79547 -28.47643 -27.61223 -26.24134 -25.13705 -23.97903 -22.81408 -22.12756 -21.72259 -20.27159 -19.44670 -19.23223 -18.08095 -17.84489 -17.49477 -16.97084 -16.71701 -16.42479 -16.23580 -15.89842 -15.39490 -15.34521 -15.16974 -14.99924 -14.76620 -14.67668 -14.48952 -14.26950 -14.10382 -13.77970 -13.57317 -13.37629 -13.15566 -13.07080 -12.98770 -12.89549 -12.55910 -12.42342 -12.36981 -12.30462 -12.10090 -11.91510 -11.89610 -11.78752 -11.73733 -11.35578 -11.25525 -10.96774 -10.92577 -10.38065 -9.57019 -9.50916 -9.05267 -7.98154 -5.29342 1.37621 1.41909 1.45258 1.55418 1.62501 1.89179 2.20995 2.52681 3.34211 3.41079 3.42815 3.62363 3.76656 3.79414 3.88679 4.03188 4.04884 4.09914 4.13371 4.17888 4.21833 4.25958 4.35637 4.45446 4.52757 4.58653 4.63879 4.67535 4.69215 4.72668 4.77910 4.80158 4.87460 4.88904 4.96059 5.05299 5.09320 5.18070 5.21481 5.22697 5.29198 5.38320 5.39371 5.43683 5.50849 5.53722 5.73681 6.04554 6.22776 6.46731 7.07365 7.25772 7.27319 8.03342 8.28401 9.26479 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009037 B = 0.003827 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3097.790753 B = 7315.495352 C = 9648.639671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.102 4.102 3 H 0.076 0.924 4 C -0.108 4.108 5 C -0.135 4.135 6 C 0.100 3.900 7 N -0.603 5.603 8 C 0.479 3.521 9 O -0.563 6.563 10 C 0.109 3.891 11 N -0.605 5.605 12 C 0.102 3.898 13 C -0.125 4.125 14 C -0.149 4.149 15 C 0.504 3.496 16 O -0.588 6.588 17 C 0.163 3.837 18 H 0.081 0.919 19 C -0.091 4.091 20 C 0.150 3.850 21 N -0.748 5.748 22 C -0.248 4.248 23 H 0.078 0.922 24 C -0.081 4.081 25 N -0.975 5.975 26 Si 0.982 3.018 27 H -0.262 1.262 28 H -0.289 1.289 29 H -0.292 1.292 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.021 0.979 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.057 0.943 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.094 0.906 39 H 0.154 0.846 40 H 0.112 0.888 41 H 0.073 0.927 42 H 0.114 0.886 43 H 0.061 0.939 44 H 0.129 0.871 45 H 0.090 0.910 46 H 0.134 0.866 47 H 0.038 0.962 48 H 0.061 0.939 49 H 0.019 0.981 50 H 0.019 0.981 51 H 0.368 0.632 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.382 -25.808 14.638 30.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.121 4.121 3 H 0.094 0.906 4 C -0.146 4.146 5 C -0.173 4.173 6 C -0.021 4.021 7 N -0.337 5.337 8 C 0.267 3.733 9 O -0.442 6.442 10 C -0.017 4.017 11 N -0.337 5.337 12 C -0.019 4.019 13 C -0.162 4.162 14 C -0.189 4.189 15 C 0.294 3.706 16 O -0.469 6.469 17 C 0.059 3.941 18 H 0.099 0.901 19 C -0.129 4.129 20 C 0.023 3.977 21 N -0.390 5.390 22 C -0.380 4.380 23 H 0.096 0.904 24 C -0.273 4.273 25 N -0.625 5.625 26 Si 0.810 3.190 27 H -0.186 1.186 28 H -0.216 1.216 29 H -0.219 1.219 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.040 0.960 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.113 0.887 39 H 0.172 0.828 40 H 0.130 0.870 41 H 0.091 0.909 42 H 0.132 0.868 43 H 0.080 0.920 44 H 0.147 0.853 45 H 0.108 0.892 46 H 0.152 0.848 47 H 0.057 0.943 48 H 0.080 0.920 49 H 0.037 0.963 50 H 0.037 0.963 51 H 0.199 0.801 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 5.015 -25.074 14.633 29.461 hybrid contribution -0.518 1.520 -0.910 1.846 sum 4.497 -23.553 13.723 27.628 Atomic orbital electron populations 1.21790 0.96146 1.01087 1.00571 1.21549 0.95553 0.99827 0.95189 0.90614 1.21537 1.01272 0.95816 0.95926 1.21982 1.01067 0.95705 0.98579 1.22151 1.02107 0.95308 0.82535 1.48247 1.55941 1.10574 1.18959 1.21892 0.77730 0.90434 0.83237 1.90850 1.57509 1.64957 1.30869 1.21470 0.99964 0.92181 0.88062 1.48054 1.08278 1.59438 1.17962 1.22376 0.96584 0.99118 0.83842 1.22626 0.91856 1.04708 0.97053 1.22349 1.00269 1.04707 0.91594 1.21732 0.82316 0.76547 0.89999 1.90677 1.55930 1.47107 1.53178 1.21110 0.98463 0.80273 0.94237 0.90070 1.21900 0.99663 0.93210 0.98096 1.20957 0.95773 0.93285 0.87669 1.42649 1.68296 1.08211 1.19860 1.19746 1.29138 0.87191 1.01907 0.90381 1.25727 1.01415 1.03015 0.97106 1.69890 1.44825 1.36842 1.10983 0.84954 0.77085 0.79122 0.77871 1.18606 1.21575 1.21893 0.92977 0.91692 0.95968 0.90735 0.90254 0.92422 0.87522 0.87351 0.88737 0.82819 0.87038 0.90891 0.86781 0.92029 0.85253 0.89153 0.84837 0.94329 0.92034 0.96305 0.96287 0.80135 0.93970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.10 8.19 71.98 0.59 -3.51 16 2 C -0.10 -2.57 2.26 -10.71 -0.02 -2.59 16 3 H 0.08 2.08 6.86 -2.39 -0.02 2.06 16 4 C -0.11 -1.70 5.42 30.63 0.17 -1.53 16 5 C -0.14 -1.62 5.74 30.67 0.18 -1.44 16 6 C 0.10 1.18 6.35 86.36 0.55 1.73 16 7 N -0.60 -13.96 2.42 -795.03 -1.93 -15.89 16 8 C 0.48 13.58 7.60 87.66 0.67 14.25 16 9 O -0.56 -22.71 11.98 -3.04 -0.04 -22.74 16 10 C 0.11 2.07 4.77 85.63 0.41 2.48 16 11 N -0.61 -13.46 2.42 -822.34 -1.99 -15.45 16 12 C 0.10 1.48 7.35 86.83 0.64 2.12 16 13 C -0.12 -1.84 7.18 31.65 0.23 -1.61 16 14 C -0.15 -2.87 6.86 30.59 0.21 -2.66 16 15 C 0.50 14.42 8.02 87.90 0.71 15.12 16 16 O -0.59 -22.71 17.59 -3.00 -0.05 -22.77 16 17 C 0.16 4.70 2.73 44.97 0.12 4.82 16 18 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 19 C -0.09 -3.76 2.76 30.60 0.08 -3.68 16 20 C 0.15 7.03 5.68 86.38 0.49 7.52 16 21 N -0.75 -44.32 5.60 -343.44 -1.92 -46.24 16 22 C -0.25 -15.34 9.99 84.03 0.84 -14.50 16 23 H 0.08 4.57 7.83 -2.91 -0.02 4.54 16 24 C -0.08 -5.06 5.50 84.86 0.47 -4.59 16 25 N -0.97 -65.30 13.06 21.65 0.28 -65.02 16 26 Si 0.98 49.24 29.55 68.60 2.03 51.27 16 27 H -0.26 -12.19 7.11 99.48 0.71 -11.48 16 28 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 29 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16 30 H 0.05 1.52 5.97 -2.39 -0.01 1.50 16 31 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.02 0.83 6.15 -2.39 -0.01 0.81 16 33 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.06 0.90 6.34 -2.39 -0.02 0.88 16 36 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.11 0.69 5.93 -2.39 -0.01 0.67 16 38 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.15 1.32 7.72 -2.39 -0.02 1.30 16 40 H 0.11 2.08 7.69 -2.39 -0.02 2.06 16 41 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 42 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.13 0.89 8.14 -2.38 -0.02 0.87 16 45 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 47 H 0.04 1.84 5.53 -2.39 -0.01 1.83 16 48 H 0.06 2.91 6.24 -2.39 -0.01 2.89 16 49 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 50 H 0.02 0.89 6.62 -2.39 -0.02 0.87 16 51 H 0.37 23.85 7.67 -92.71 -0.71 23.14 16 52 H 0.25 16.10 8.31 -92.71 -0.77 15.33 16 Total: -1.00 -93.09 395.05 2.90 -90.19 By element: Atomic # 1 Polarization: 34.53 SS G_CDS: 0.21 Total: 34.74 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: 6.32 Total: 11.91 kcal Atomic # 7 Polarization: -137.04 SS G_CDS: -5.56 Total: -142.60 kcal Atomic # 8 Polarization: -45.42 SS G_CDS: -0.09 Total: -45.51 kcal Atomic # 14 Polarization: 49.24 SS G_CDS: 2.03 Total: 51.27 kcal Total: -93.09 2.90 -90.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479509129.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.772 kcal (2) G-P(sol) polarization free energy of solvation -93.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.57 seconds