Wall clock time and date at job start Tue Mar 31 2020 22:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 115.56142 * 2 1 4 4 C 1.53003 * 117.50133 * 214.30724 * 2 1 3 5 5 C 1.52997 * 60.03185 * 252.52370 * 4 2 1 6 6 H 1.09001 * 117.50103 * 107.50124 * 5 4 2 7 7 C 1.50699 * 117.49937 * 252.49640 * 5 4 2 8 8 O 1.21288 * 119.99855 * 68.61253 * 7 5 4 9 9 N 1.34778 * 120.00445 * 248.60850 * 7 5 4 10 10 C 1.46495 * 120.00330 * 179.97438 * 9 7 5 11 11 C 1.53001 * 109.47450 * 180.02562 * 10 9 7 12 12 C 1.52991 * 109.47134 * 179.97438 * 11 10 9 13 13 C 1.53003 * 109.46877 * 185.57596 * 12 11 10 14 14 H 1.08997 * 109.90410 * 53.08944 * 13 12 11 15 15 C 1.54000 * 109.91545 * 174.18508 * 13 12 11 16 16 C 1.54595 * 105.13478 * 120.58290 * 15 13 12 17 17 C 1.54938 * 102.92678 * 21.95617 * 16 15 13 18 18 N 1.47898 * 109.92210 * 291.77964 * 13 12 11 19 19 C 1.46897 * 111.00282 * 94.80073 * 18 13 12 20 20 C 1.50696 * 109.47260 * 176.26542 * 19 18 13 21 21 O 1.21293 * 119.99996 * 359.97438 * 20 19 18 22 22 N 1.34777 * 120.00068 * 179.97438 * 20 19 18 23 23 C 1.37094 * 119.99938 * 179.97438 * 22 20 19 24 24 H 1.08000 * 120.00438 * 0.02562 * 23 22 20 25 25 C 1.38953 * 119.99730 * 180.02562 * 23 22 20 26 26 N 1.31405 * 120.00334 * 0.02562 * 25 23 22 27 27 Si 1.86806 * 119.99785 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.47264 * 359.97438 * 27 25 23 29 29 H 1.48493 * 109.47278 * 120.00066 * 27 25 23 30 30 H 1.48502 * 109.46785 * 239.99934 * 27 25 23 31 31 H 1.09005 * 109.46708 * 154.29675 * 1 2 3 32 32 H 1.08993 * 109.47048 * 274.29967 * 1 2 3 33 33 H 1.08998 * 109.46844 * 34.30471 * 1 2 3 34 34 H 1.09004 * 117.49696 * 145.02438 * 4 2 1 35 35 H 1.09001 * 117.49590 * 0.02562 * 4 2 1 36 36 H 0.96997 * 119.99380 * 0.02562 * 9 7 5 37 37 H 1.09004 * 109.47317 * 300.00314 * 10 9 7 38 38 H 1.08998 * 109.47155 * 59.99903 * 10 9 7 39 39 H 1.09004 * 109.46880 * 300.00291 * 11 10 9 40 40 H 1.08994 * 109.46788 * 59.99565 * 11 10 9 41 41 H 1.08991 * 109.47742 * 305.57939 * 12 11 10 42 42 H 1.09004 * 109.47348 * 65.58223 * 12 11 10 43 43 H 1.09002 * 110.31056 * 239.49455 * 15 13 12 44 44 H 1.08999 * 110.30963 * 1.56654 * 15 13 12 45 45 H 1.09004 * 110.72596 * 140.31648 * 16 15 13 46 46 H 1.08998 * 110.72280 * 263.59352 * 16 15 13 47 47 H 1.09003 * 110.66571 * 81.01924 * 17 16 15 48 48 H 1.08996 * 110.66954 * 204.14900 * 17 16 15 49 49 H 1.09005 * 109.46634 * 296.26407 * 19 18 13 50 50 H 1.08999 * 109.46772 * 56.26135 * 19 18 13 51 51 H 0.97005 * 119.99776 * 0.02562 * 22 20 19 52 52 H 0.97004 * 120.00256 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2366 -1.1210 -0.7649 5 6 2.2367 -1.1218 0.7650 6 1 1.6116 -1.8596 1.2681 7 6 3.5297 -0.7827 1.4609 8 8 3.9726 0.3448 1.4017 9 7 4.1938 -1.7323 2.1492 10 6 5.4510 -1.4028 2.8252 11 6 5.9951 -2.6491 3.5263 12 6 7.3084 -2.3051 4.2317 13 6 7.9231 -3.5791 4.8147 14 1 8.0074 -4.3394 4.0383 15 6 9.3138 -3.2704 5.3997 16 6 9.2177 -3.6554 6.8939 17 6 8.0310 -4.6513 6.9196 18 7 7.0859 -4.0794 5.9266 19 6 6.1379 -5.0976 5.4550 20 6 5.3678 -5.6483 6.6274 21 8 5.5874 -5.2338 7.7460 22 7 4.4350 -6.6016 6.4331 23 6 3.7348 -7.1029 7.4998 24 1 3.9303 -6.7338 8.4958 25 6 2.7735 -8.0861 7.2995 26 7 2.5359 -8.5356 6.0878 27 14 1.8188 -8.7688 8.7529 28 1 2.2717 -8.1017 10.0000 29 1 0.3688 -8.5172 8.5549 30 1 2.0576 -10.2306 8.8592 31 1 -0.3633 -0.9260 -0.4457 32 1 -0.3633 0.0770 1.0247 33 1 -0.3633 0.8489 -0.5792 34 1 3.1717 -0.8752 -1.2682 35 1 1.6113 -1.8583 -1.2685 36 1 3.8397 -2.6341 2.1963 37 1 6.1773 -1.0529 2.0915 38 1 5.2729 -0.6196 3.5620 39 1 5.2690 -2.9994 4.2599 40 1 6.1733 -3.4320 2.7891 41 1 8.0006 -1.8626 3.5154 42 1 7.1139 -1.5948 5.0354 43 1 10.0753 -3.8712 4.9025 44 1 9.5414 -2.2096 5.2947 45 1 10.1353 -4.1402 7.2271 46 1 8.9994 -2.7794 7.5046 47 1 8.3563 -5.6454 6.6128 48 1 7.5764 -4.6826 7.9097 49 1 5.4449 -4.6473 4.7443 50 1 6.6846 -5.9050 4.9677 51 1 4.2596 -6.9334 5.5386 52 1 1.8645 -9.2217 5.9480 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480827309.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:46 Heat of formation + Delta-G solvation = -59.434448 kcal Electronic energy + Delta-G solvation = -29210.892536 eV Core-core repulsion = 25210.383146 eV Total energy + Delta-G solvation = -4000.509389 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.14951 -39.46473 -37.67905 -37.17863 -35.57932 -33.99222 -32.97627 -31.96663 -31.16661 -29.47543 -28.63192 -26.71057 -25.58802 -24.29526 -23.42790 -21.83680 -21.13045 -20.87296 -20.07171 -19.86590 -19.19797 -17.89335 -17.53348 -16.30512 -16.13062 -15.80876 -15.52988 -15.15627 -14.96960 -14.53330 -14.46507 -14.32259 -14.02295 -13.81239 -13.52605 -13.46436 -13.01669 -12.89117 -12.69371 -12.40497 -12.31667 -12.26037 -11.98885 -11.90985 -11.69705 -11.57400 -11.27060 -11.15403 -11.05550 -10.81900 -10.66019 -10.62817 -10.45899 -10.40149 -10.35955 -10.34058 -10.24911 -9.89406 -9.51701 -9.17972 -8.41064 -8.02130 -7.90923 -6.44605 -3.85114 2.35571 2.99087 3.14025 3.24953 3.32027 3.55994 3.87776 4.04703 4.25973 4.40674 4.48338 4.53609 4.61663 4.71186 4.89734 4.95130 5.00631 5.03400 5.05531 5.17660 5.23588 5.27469 5.34994 5.42459 5.45359 5.47710 5.55626 5.58786 5.62247 5.67358 5.75239 5.76222 5.78246 5.84190 5.86966 5.93721 6.01780 6.03118 6.14835 6.23335 6.27320 6.29807 6.37174 6.38344 6.66548 7.26464 7.34775 7.37824 7.52925 8.04059 8.10420 8.59183 9.15865 9.51581 10.03561 10.73199 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.006831 B = 0.002979 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4098.236727 B = 9396.129538 C =13020.118093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.122 4.122 3 H 0.116 0.884 4 C -0.149 4.149 5 C -0.193 4.193 6 H 0.125 0.875 7 C 0.542 3.458 8 O -0.546 6.546 9 N -0.725 5.725 10 C 0.121 3.879 11 C -0.137 4.137 12 C -0.096 4.096 13 C 0.062 3.938 14 H 0.049 0.951 15 C -0.126 4.126 16 C -0.125 4.125 17 C 0.039 3.961 18 N -0.487 5.487 19 C 0.032 3.968 20 C 0.443 3.557 21 O -0.578 6.578 22 N -0.564 5.564 23 C -0.297 4.297 24 H 0.103 0.897 25 C 0.022 3.978 26 N -0.902 5.902 27 Si 0.928 3.072 28 H -0.268 1.268 29 H -0.281 1.281 30 H -0.282 1.282 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.404 0.596 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.075 0.925 43 H 0.062 0.938 44 H 0.070 0.930 45 H 0.065 0.935 46 H 0.072 0.928 47 H 0.034 0.966 48 H 0.109 0.891 49 H 0.091 0.909 50 H 0.045 0.955 51 H 0.391 0.609 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.718 11.190 -13.350 18.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.140 4.140 3 H 0.134 0.866 4 C -0.186 4.186 5 C -0.214 4.214 6 H 0.143 0.857 7 C 0.329 3.671 8 O -0.424 6.424 9 N -0.376 5.376 10 C -0.003 4.003 11 C -0.174 4.174 12 C -0.135 4.135 13 C -0.047 4.047 14 H 0.067 0.933 15 C -0.164 4.164 16 C -0.163 4.163 17 C -0.088 4.088 18 N -0.212 5.212 19 C -0.099 4.099 20 C 0.229 3.771 21 O -0.462 6.462 22 N -0.201 5.201 23 C -0.427 4.427 24 H 0.121 0.879 25 C -0.179 4.179 26 N -0.544 5.544 27 Si 0.755 3.245 28 H -0.192 1.192 29 H -0.207 1.207 30 H -0.208 1.208 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.116 0.884 35 H 0.123 0.877 36 H 0.238 0.762 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.102 0.898 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.094 0.906 43 H 0.081 0.919 44 H 0.089 0.911 45 H 0.084 0.916 46 H 0.091 0.909 47 H 0.052 0.948 48 H 0.127 0.873 49 H 0.109 0.891 50 H 0.063 0.937 51 H 0.224 0.776 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.743 12.546 -12.454 18.303 hybrid contribution -0.374 -1.985 -0.262 2.037 sum 4.369 10.560 -12.716 17.097 Atomic orbital electron populations 1.21412 0.92170 1.02239 1.02359 1.22383 0.95275 0.94999 1.01389 0.86564 1.23101 1.03099 1.01612 0.90828 1.22349 0.97836 1.05470 0.95792 0.85681 1.19670 0.84612 0.84629 0.78209 1.90684 1.68749 1.21141 1.61804 1.45984 1.24866 1.13632 1.53108 1.21410 0.84700 0.98109 0.96044 1.21974 0.98896 0.96747 0.99824 1.21472 0.95232 0.97421 0.99329 1.22459 0.92286 0.96574 0.93373 0.93277 1.22430 0.95863 1.01633 0.96439 1.22519 0.98101 0.99887 0.95828 1.23361 0.91220 0.94751 0.99487 1.64485 1.14407 1.32705 1.09585 1.22224 0.96378 0.93939 0.97385 1.19740 0.84104 0.83443 0.89844 1.90474 1.68792 1.62046 1.24923 1.41861 1.33460 1.34263 1.10524 1.19740 1.15330 1.17864 0.89734 0.87892 1.25247 0.97858 0.97105 0.97718 1.69613 1.34296 1.30008 1.20452 0.85820 0.79048 0.78507 0.81104 1.19221 1.20735 1.20792 0.92258 0.91811 0.91703 0.88375 0.87713 0.76188 0.91790 0.91380 0.89847 0.91675 0.91825 0.90629 0.91892 0.91105 0.91628 0.90917 0.94792 0.87254 0.89057 0.93674 0.77570 0.91954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.87 10.19 37.16 0.38 -0.49 16 2 C -0.12 -1.08 5.92 -90.58 -0.54 -1.62 16 3 H 0.12 1.20 7.67 -51.93 -0.40 0.81 16 4 C -0.15 -1.18 9.88 -26.73 -0.26 -1.45 16 5 C -0.19 -1.83 5.91 -91.74 -0.54 -2.37 16 6 H 0.13 1.01 8.14 -51.93 -0.42 0.59 16 7 C 0.54 6.66 7.61 -10.98 -0.08 6.57 16 8 O -0.55 -8.65 16.26 5.55 0.09 -8.56 16 9 N -0.72 -7.75 5.56 -60.29 -0.33 -8.08 16 10 C 0.12 1.32 5.67 -4.04 -0.02 1.30 16 11 C -0.14 -1.44 4.30 -26.74 -0.11 -1.56 16 12 C -0.10 -1.03 4.66 -26.73 -0.12 -1.16 16 13 C 0.06 0.76 2.58 -66.64 -0.17 0.59 16 14 H 0.05 0.59 7.68 -51.93 -0.40 0.19 16 15 C -0.13 -1.37 6.57 -25.37 -0.17 -1.54 16 16 C -0.13 -1.57 7.06 -24.87 -0.18 -1.75 16 17 C 0.04 0.64 5.54 -1.90 -0.01 0.63 16 18 N -0.49 -7.82 4.68 -224.00 -1.05 -8.87 16 19 C 0.03 0.56 4.99 -4.98 -0.02 0.53 16 20 C 0.44 10.18 7.51 -10.99 -0.08 10.10 16 21 O -0.58 -15.16 13.56 5.55 0.08 -15.08 16 22 N -0.56 -13.95 5.29 -10.96 -0.06 -14.00 16 23 C -0.30 -8.13 9.68 -14.93 -0.14 -8.27 16 24 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 25 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 26 N -0.90 -24.05 13.05 55.50 0.72 -23.33 16 27 Si 0.93 20.77 29.55 -169.99 -5.02 15.75 16 28 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 29 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 30 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 31 H 0.06 0.36 7.90 -51.93 -0.41 -0.05 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.10 0.65 8.05 -51.93 -0.42 0.23 16 36 H 0.40 3.55 8.47 -40.82 -0.35 3.20 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.08 1.05 6.08 -51.93 -0.32 0.73 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.07 0.69 7.69 -51.93 -0.40 0.29 16 45 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.03 0.56 8.01 -51.93 -0.42 0.14 16 48 H 0.11 2.16 6.25 -51.93 -0.32 1.83 16 49 H 0.09 1.41 5.32 -51.93 -0.28 1.13 16 50 H 0.05 0.73 7.98 -51.93 -0.41 0.32 16 51 H 0.39 9.23 7.90 -40.82 -0.32 8.91 16 52 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 415.02 15.07 6.25 6.25 Total: -1.00 -32.31 415.02 -10.53 -42.84 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: -9.02 Total: 13.08 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -2.18 Total: 0.00 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: -0.72 Total: -54.28 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: 0.17 Total: -23.64 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -32.31 -10.53 -42.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480827309.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.598 kcal (2) G-P(sol) polarization free energy of solvation -32.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds