Wall clock time and date at job start Tue Mar 31 2020 21:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.52494 * 2 1 4 4 C 1.53042 * 109.50019 * 120.08507 * 2 1 3 5 5 C 1.53040 * 109.53725 * 181.31860 * 4 2 1 6 6 C 1.53199 * 109.30955 * 298.63141 * 5 4 2 7 7 N 1.46927 * 108.77690 * 54.63853 * 6 5 4 8 8 C 1.34775 * 120.63039 * 126.36726 * 7 6 5 9 9 O 1.21346 * 119.99672 * 186.42628 * 8 7 6 10 10 C 1.49448 * 120.00158 * 6.42297 * 8 7 6 11 11 O 1.21353 * 119.99749 * 4.24497 * 10 8 7 12 12 N 1.34775 * 120.00113 * 184.23919 * 10 8 7 13 13 C 1.46501 * 120.00045 * 180.02562 * 12 10 8 14 14 C 1.53006 * 109.47157 * 179.97438 * 13 12 10 15 15 C 1.52993 * 109.47084 * 180.02562 * 14 13 12 16 16 N 1.46498 * 109.47150 * 180.02562 * 15 14 13 17 17 C 1.36935 * 120.00507 * 89.99382 * 16 15 14 18 18 H 1.07997 * 119.99913 * 302.61085 * 17 16 15 19 19 C 1.38810 * 120.00146 * 122.60070 * 17 16 15 20 20 N 1.31618 * 120.00117 * 168.12034 * 19 17 16 21 21 Si 1.86799 * 119.99954 * 348.12358 * 19 17 16 22 22 H 1.48504 * 109.47439 * 95.68721 * 21 19 17 23 23 H 1.48506 * 109.47054 * 215.68509 * 21 19 17 24 24 H 1.48498 * 109.47024 * 335.68460 * 21 19 17 25 25 C 1.46503 * 119.99903 * 269.99875 * 16 15 14 26 26 C 1.52993 * 117.49945 * 181.92497 * 25 16 15 27 27 C 1.52997 * 117.50125 * 113.26009 * 25 16 15 28 28 C 1.46924 * 118.73645 * 306.64399 * 7 6 5 29 29 H 1.08996 * 109.47216 * 299.91525 * 1 2 3 30 30 H 1.08994 * 109.47218 * 59.91871 * 1 2 3 31 31 H 1.09000 * 109.47020 * 179.91842 * 1 2 3 32 32 H 1.09001 * 109.45822 * 61.29443 * 4 2 1 33 33 H 1.09004 * 109.45598 * 301.33605 * 4 2 1 34 34 H 1.08998 * 109.49545 * 178.68735 * 5 4 2 35 35 H 1.08990 * 109.52854 * 58.59583 * 5 4 2 36 36 H 1.09001 * 109.58553 * 294.84970 * 6 5 4 37 37 H 1.09002 * 109.58139 * 174.42630 * 6 5 4 38 38 H 0.96997 * 119.99774 * 0.02562 * 12 10 8 39 39 H 1.09003 * 109.47262 * 60.00190 * 13 12 10 40 40 H 1.08998 * 109.47323 * 300.00119 * 13 12 10 41 41 H 1.09000 * 109.46931 * 59.99458 * 14 13 12 42 42 H 1.09006 * 109.46704 * 299.99841 * 14 13 12 43 43 H 1.09006 * 109.47014 * 299.99399 * 15 14 13 44 44 H 1.08999 * 109.47542 * 59.99372 * 15 14 13 45 45 H 0.96997 * 119.99848 * 180.02562 * 20 19 17 46 46 H 1.08999 * 115.54871 * 327.58882 * 25 16 15 47 47 H 1.09003 * 117.50276 * 359.97438 * 26 25 16 48 48 H 1.08998 * 117.50266 * 145.02157 * 26 25 16 49 49 H 1.08994 * 117.50201 * 214.97936 * 27 25 16 50 50 H 1.09006 * 117.49923 * 359.97438 * 27 25 16 51 51 H 1.08998 * 109.58909 * 173.14645 * 28 7 6 52 52 H 1.09001 * 109.58591 * 293.57045 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0408 -0.7232 1.2483 5 6 3.5709 -0.6950 1.2659 6 6 4.1053 -1.4267 0.0305 7 7 3.5046 -0.8291 -1.1698 8 6 4.2811 -0.3855 -2.1781 9 8 3.7830 0.2105 -3.1104 10 6 5.7555 -0.6275 -2.1479 11 8 6.2436 -1.2895 -1.2555 12 7 6.5431 -0.1108 -3.1118 13 6 7.9884 -0.3485 -3.0825 14 6 8.6433 0.3420 -4.2806 15 6 10.1525 0.0932 -4.2503 16 7 10.7796 0.7549 -5.3971 17 6 11.2215 2.0461 -5.2852 18 1 10.5354 2.8285 -4.9963 19 6 12.5513 2.3494 -5.5430 20 7 12.9282 3.6045 -5.6660 21 14 13.8060 0.9763 -5.7153 22 1 13.9863 0.6478 -7.1523 23 1 15.1032 1.4163 -5.1417 24 1 13.3261 -0.2267 -4.9889 25 6 10.9339 0.0351 -6.6638 26 6 11.6370 0.7649 -7.8099 27 6 10.1247 0.5337 -7.8628 28 6 2.0415 -0.7186 -1.2472 29 1 -0.3633 0.5125 0.8907 30 1 -0.3633 0.5151 -0.8892 31 1 -0.3633 -1.0277 -0.0015 32 1 1.6967 -1.7574 1.2352 33 1 1.6582 -0.2246 2.1389 34 1 3.9335 -1.1898 2.1669 35 1 3.9164 0.3386 1.2542 36 1 3.8375 -2.4818 0.0865 37 1 5.1896 -1.3246 -0.0139 38 1 6.1530 0.4185 -3.8249 39 1 8.1814 -1.4202 -3.1312 40 1 8.4042 0.0539 -2.1588 41 1 8.4502 1.4137 -4.2324 42 1 8.2274 -0.0609 -5.2041 43 1 10.5687 0.4959 -3.3268 44 1 10.3452 -0.9785 -4.2987 45 1 13.8574 3.8163 -5.8465 46 1 11.0952 -1.0394 -6.5773 47 1 11.9845 1.7808 -7.6218 48 1 12.2605 0.1706 -8.4778 49 1 9.7540 -0.2127 -8.5652 50 1 9.4772 1.3970 -7.7091 51 1 1.7645 -0.1495 -2.1346 52 1 1.6020 -1.7148 -1.2976 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490386995.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:12 Heat of formation + Delta-G solvation = -17.982845 kcal Electronic energy + Delta-G solvation = -29373.382160 eV Core-core repulsion = 25374.670247 eV Total energy + Delta-G solvation = -3998.711913 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.72 seconds Orbital eigenvalues (eV) -41.14122 -39.14774 -37.93806 -37.46301 -35.80617 -34.06574 -33.28371 -32.21565 -32.11091 -30.06601 -27.66537 -26.58812 -25.56098 -23.90710 -22.70479 -22.57613 -21.56169 -21.32594 -20.68820 -19.89489 -19.64423 -17.69601 -17.20537 -16.81601 -16.28521 -15.99525 -15.63030 -15.30180 -15.10217 -14.87743 -14.64867 -14.56557 -14.11787 -14.04699 -13.73026 -13.50906 -13.30879 -13.17438 -13.00028 -12.54567 -12.26162 -12.14613 -12.10242 -12.02857 -11.71687 -11.45464 -11.27292 -11.22882 -11.14125 -10.90429 -10.78576 -10.76994 -10.72749 -10.39826 -10.11929 -9.79387 -9.48592 -9.34973 -9.19210 -9.17715 -9.01335 -8.48170 -6.47541 -6.03130 -3.78208 1.26212 2.15568 3.04328 3.33200 3.36665 3.45955 3.53937 4.15952 4.34004 4.39538 4.48407 4.49862 4.69225 4.76458 4.86076 4.93603 5.03424 5.13576 5.20348 5.27199 5.30998 5.33779 5.35338 5.39210 5.41240 5.58343 5.61267 5.69748 5.70828 5.74084 5.77041 5.83477 5.97082 5.99162 5.99970 6.04715 6.08065 6.20351 6.30786 6.43282 6.47977 6.56818 6.68790 6.81757 6.87204 6.99502 7.14481 7.27592 7.58791 7.87014 8.07632 8.49343 8.98353 9.59806 10.10475 11.05291 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.024567 B = 0.001948 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.469325 B =14370.876005 C =14689.854853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 H 0.075 0.925 4 C -0.117 4.117 5 C -0.136 4.136 6 C 0.058 3.942 7 N -0.582 5.582 8 C 0.508 3.492 9 O -0.523 6.523 10 C 0.506 3.494 11 O -0.517 6.517 12 N -0.688 5.688 13 C 0.116 3.884 14 C -0.150 4.150 15 C 0.156 3.844 16 N -0.573 5.573 17 C -0.285 4.285 18 H 0.070 0.930 19 C 0.055 3.945 20 N -0.898 5.898 21 Si 0.891 3.109 22 H -0.274 1.274 23 H -0.304 1.304 24 H -0.268 1.268 25 C 0.109 3.891 26 C -0.199 4.199 27 C -0.213 4.213 28 C 0.111 3.889 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.151 0.849 38 H 0.414 0.586 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.060 0.940 44 H 0.038 0.962 45 H 0.265 0.735 46 H 0.086 0.914 47 H 0.118 0.882 48 H 0.074 0.926 49 H 0.071 0.929 50 H 0.088 0.912 51 H 0.094 0.906 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.182 -11.055 11.399 26.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.126 4.126 3 H 0.094 0.906 4 C -0.155 4.155 5 C -0.174 4.174 6 C -0.062 4.062 7 N -0.315 5.315 8 C 0.290 3.710 9 O -0.399 6.399 10 C 0.287 3.713 11 O -0.396 6.396 12 N -0.339 5.339 13 C -0.007 4.007 14 C -0.190 4.190 15 C 0.030 3.970 16 N -0.293 5.293 17 C -0.414 4.414 18 H 0.087 0.913 19 C -0.148 4.148 20 N -0.537 5.537 21 Si 0.719 3.281 22 H -0.200 1.200 23 H -0.232 1.232 24 H -0.193 1.193 25 C 0.001 3.999 26 C -0.237 4.237 27 C -0.254 4.254 28 C -0.011 4.011 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.167 0.833 38 H 0.250 0.750 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.057 0.943 45 H 0.075 0.925 46 H 0.104 0.896 47 H 0.136 0.864 48 H 0.093 0.907 49 H 0.089 0.911 50 H 0.107 0.893 51 H 0.112 0.888 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -20.902 -11.069 11.512 26.305 hybrid contribution 0.387 -0.323 -0.534 0.734 sum -20.515 -11.392 10.978 25.907 Atomic orbital electron populations 1.21762 0.94161 1.02104 1.02230 1.21427 0.96090 1.00298 0.94835 0.90645 1.21632 0.95680 1.00723 0.97415 1.21946 0.95634 1.01572 0.98229 1.23107 1.04429 0.96414 0.82294 1.47950 1.06612 1.58909 1.18053 1.20179 0.87915 0.79828 0.83043 1.90759 1.74986 1.39598 1.34517 1.20069 0.87508 0.80816 0.82896 1.90399 1.75189 1.39697 1.34272 1.46006 1.08848 1.51813 1.27260 1.21666 0.77093 1.01175 1.00752 1.22466 0.99522 1.01240 0.95776 1.20785 0.89289 0.95368 0.91590 1.43533 1.68648 1.12448 1.04627 1.18522 0.92334 0.83146 1.47380 0.91296 1.25928 0.97689 0.95660 0.95476 1.69842 1.17506 1.17603 1.48764 0.86641 0.79883 0.83182 0.78384 1.20016 1.23217 1.19273 1.21337 1.01867 0.93584 0.83088 1.23447 0.94414 1.04049 1.01795 1.23362 0.94365 1.03531 1.04118 1.21722 0.78733 1.01174 0.99474 0.92179 0.92277 0.92432 0.91727 0.91642 0.90428 0.91588 0.91523 0.83260 0.74989 0.91057 0.90726 0.90987 0.91742 0.92128 0.94322 0.92513 0.89592 0.86390 0.90735 0.91100 0.89304 0.88758 0.91070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 9.20 37.16 0.34 -0.44 16 2 C -0.11 -0.75 2.86 -90.72 -0.26 -1.01 16 3 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 4 C -0.12 -0.73 5.17 -26.69 -0.14 -0.87 16 5 C -0.14 -0.99 6.08 -26.61 -0.16 -1.16 16 6 C 0.06 0.53 6.07 -3.71 -0.02 0.51 16 7 N -0.58 -6.07 2.98 -173.53 -0.52 -6.59 16 8 C 0.51 6.45 7.75 -11.59 -0.09 6.36 16 9 O -0.52 -7.65 15.90 5.50 0.09 -7.57 16 10 C 0.51 6.60 7.79 -11.59 -0.09 6.51 16 11 O -0.52 -7.21 13.07 5.49 0.07 -7.14 16 12 N -0.69 -8.70 5.55 -60.73 -0.34 -9.04 16 13 C 0.12 1.52 5.67 -4.04 -0.02 1.50 16 14 C -0.15 -2.29 5.65 -26.73 -0.15 -2.44 16 15 C 0.16 2.87 5.71 -4.05 -0.02 2.84 16 16 N -0.57 -12.83 2.03 -165.67 -0.34 -13.17 16 17 C -0.28 -7.57 9.11 -15.06 -0.14 -7.71 16 18 H 0.07 2.03 8.06 -52.49 -0.42 1.60 16 19 C 0.06 1.53 3.91 -17.43 -0.07 1.46 16 20 N -0.90 -26.42 13.97 55.49 0.78 -25.64 16 21 Si 0.89 21.80 24.65 -169.99 -4.19 17.61 16 22 H -0.27 -6.47 6.14 56.52 0.35 -6.13 16 23 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 24 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 25 C 0.11 2.26 5.07 -67.93 -0.34 1.92 16 26 C -0.20 -4.29 6.75 -26.70 -0.18 -4.47 16 27 C -0.21 -4.13 10.38 -26.69 -0.28 -4.41 16 28 C 0.11 0.95 5.70 -3.93 -0.02 0.93 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.15 1.64 4.10 -55.89 -0.23 1.41 16 38 H 0.41 5.01 7.95 -40.82 -0.32 4.69 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.06 1.15 8.04 -51.93 -0.42 0.73 16 44 H 0.04 0.64 8.07 -51.93 -0.42 0.22 16 45 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 46 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 47 H 0.12 2.96 5.27 -51.93 -0.27 2.69 16 48 H 0.07 1.47 7.96 -51.93 -0.41 1.05 16 49 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 50 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 51 H 0.09 0.91 7.00 -51.93 -0.36 0.55 16 52 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 404.55 15.07 6.10 6.10 Total: -1.00 -30.18 404.55 -9.24 -39.42 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -9.24 Total: 6.50 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -1.65 Total: -0.48 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: -0.42 Total: -54.44 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: 0.16 Total: -14.70 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.19 Total: 17.61 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -30.18 -9.24 -39.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490386995.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.435 kcal (2) G-P(sol) polarization free energy of solvation -30.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.72 seconds