Wall clock time and date at job start Tue Mar 31 2020 21:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.52494 * 2 1 4 4 C 1.53042 * 109.50019 * 120.08507 * 2 1 3 5 5 C 1.53040 * 109.53725 * 181.31860 * 4 2 1 6 6 C 1.53199 * 109.30955 * 298.63141 * 5 4 2 7 7 N 1.46927 * 108.77690 * 54.63853 * 6 5 4 8 8 C 1.34775 * 120.63039 * 126.36726 * 7 6 5 9 9 O 1.21346 * 119.99672 * 186.42628 * 8 7 6 10 10 C 1.49448 * 120.00158 * 6.42297 * 8 7 6 11 11 O 1.21353 * 119.99749 * 4.24497 * 10 8 7 12 12 N 1.34775 * 120.00113 * 184.23919 * 10 8 7 13 13 C 1.46501 * 120.00045 * 180.02562 * 12 10 8 14 14 C 1.53006 * 109.47157 * 179.97438 * 13 12 10 15 15 C 1.52993 * 109.47084 * 180.02562 * 14 13 12 16 16 N 1.46498 * 109.47150 * 180.02562 * 15 14 13 17 17 C 1.36935 * 120.00507 * 89.99382 * 16 15 14 18 18 H 1.07997 * 119.99913 * 302.61085 * 17 16 15 19 19 C 1.38810 * 120.00146 * 122.60070 * 17 16 15 20 20 N 1.31618 * 120.00117 * 168.12034 * 19 17 16 21 21 Si 1.86799 * 119.99954 * 348.12358 * 19 17 16 22 22 H 1.48504 * 109.47439 * 95.68721 * 21 19 17 23 23 H 1.48506 * 109.47054 * 215.68509 * 21 19 17 24 24 H 1.48498 * 109.47024 * 335.68460 * 21 19 17 25 25 C 1.46503 * 119.99903 * 269.99875 * 16 15 14 26 26 C 1.52993 * 117.49945 * 181.92497 * 25 16 15 27 27 C 1.52997 * 117.50125 * 113.26009 * 25 16 15 28 28 C 1.46924 * 118.73645 * 306.64399 * 7 6 5 29 29 H 1.08996 * 109.47216 * 299.91525 * 1 2 3 30 30 H 1.08994 * 109.47218 * 59.91871 * 1 2 3 31 31 H 1.09000 * 109.47020 * 179.91842 * 1 2 3 32 32 H 1.09001 * 109.45822 * 61.29443 * 4 2 1 33 33 H 1.09004 * 109.45598 * 301.33605 * 4 2 1 34 34 H 1.08998 * 109.49545 * 178.68735 * 5 4 2 35 35 H 1.08990 * 109.52854 * 58.59583 * 5 4 2 36 36 H 1.09001 * 109.58553 * 294.84970 * 6 5 4 37 37 H 1.09002 * 109.58139 * 174.42630 * 6 5 4 38 38 H 0.96997 * 119.99774 * 0.02562 * 12 10 8 39 39 H 1.09003 * 109.47262 * 60.00190 * 13 12 10 40 40 H 1.08998 * 109.47323 * 300.00119 * 13 12 10 41 41 H 1.09000 * 109.46931 * 59.99458 * 14 13 12 42 42 H 1.09006 * 109.46704 * 299.99841 * 14 13 12 43 43 H 1.09006 * 109.47014 * 299.99399 * 15 14 13 44 44 H 1.08999 * 109.47542 * 59.99372 * 15 14 13 45 45 H 0.96997 * 119.99848 * 180.02562 * 20 19 17 46 46 H 1.08999 * 115.54871 * 327.58882 * 25 16 15 47 47 H 1.09003 * 117.50276 * 359.97438 * 26 25 16 48 48 H 1.08998 * 117.50266 * 145.02157 * 26 25 16 49 49 H 1.08994 * 117.50201 * 214.97936 * 27 25 16 50 50 H 1.09006 * 117.49923 * 359.97438 * 27 25 16 51 51 H 1.08998 * 109.58909 * 173.14645 * 28 7 6 52 52 H 1.09001 * 109.58591 * 293.57045 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0408 -0.7232 1.2483 5 6 3.5709 -0.6950 1.2659 6 6 4.1053 -1.4267 0.0305 7 7 3.5046 -0.8291 -1.1698 8 6 4.2811 -0.3855 -2.1781 9 8 3.7830 0.2105 -3.1104 10 6 5.7555 -0.6275 -2.1479 11 8 6.2436 -1.2895 -1.2555 12 7 6.5431 -0.1108 -3.1118 13 6 7.9884 -0.3485 -3.0825 14 6 8.6433 0.3420 -4.2806 15 6 10.1525 0.0932 -4.2503 16 7 10.7796 0.7549 -5.3971 17 6 11.2215 2.0461 -5.2852 18 1 10.5354 2.8285 -4.9963 19 6 12.5513 2.3494 -5.5430 20 7 12.9282 3.6045 -5.6660 21 14 13.8060 0.9763 -5.7153 22 1 13.9863 0.6478 -7.1523 23 1 15.1032 1.4163 -5.1417 24 1 13.3261 -0.2267 -4.9889 25 6 10.9339 0.0351 -6.6638 26 6 11.6370 0.7649 -7.8099 27 6 10.1247 0.5337 -7.8628 28 6 2.0415 -0.7186 -1.2472 29 1 -0.3633 0.5125 0.8907 30 1 -0.3633 0.5151 -0.8892 31 1 -0.3633 -1.0277 -0.0015 32 1 1.6967 -1.7574 1.2352 33 1 1.6582 -0.2246 2.1389 34 1 3.9335 -1.1898 2.1669 35 1 3.9164 0.3386 1.2542 36 1 3.8375 -2.4818 0.0865 37 1 5.1896 -1.3246 -0.0139 38 1 6.1530 0.4185 -3.8249 39 1 8.1814 -1.4202 -3.1312 40 1 8.4042 0.0539 -2.1588 41 1 8.4502 1.4137 -4.2324 42 1 8.2274 -0.0609 -5.2041 43 1 10.5687 0.4959 -3.3268 44 1 10.3452 -0.9785 -4.2987 45 1 13.8574 3.8163 -5.8465 46 1 11.0952 -1.0394 -6.5773 47 1 11.9845 1.7808 -7.6218 48 1 12.2605 0.1706 -8.4778 49 1 9.7540 -0.2127 -8.5652 50 1 9.4772 1.3970 -7.7091 51 1 1.7645 -0.1495 -2.1346 52 1 1.6020 -1.7148 -1.2976 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490386995.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:09 Heat of formation + Delta-G solvation = -36.797035 kcal Electronic energy + Delta-G solvation = -29374.198004 eV Core-core repulsion = 25374.670247 eV Total energy + Delta-G solvation = -3999.527757 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.08850 -40.06380 -39.12341 -38.81419 -36.95055 -35.07429 -34.61563 -33.99551 -32.85561 -31.58867 -28.48066 -27.51775 -26.82316 -25.38722 -23.77969 -23.27441 -23.18988 -22.56340 -21.70118 -21.37176 -20.60328 -18.75241 -18.61513 -18.17464 -17.30765 -17.15635 -16.73057 -16.59753 -16.30896 -16.12026 -15.72178 -15.44855 -15.25296 -15.11070 -14.93883 -14.88347 -14.44340 -14.09610 -13.90400 -13.75232 -13.59483 -13.55650 -13.12634 -12.85557 -12.78176 -12.73500 -12.47599 -12.45716 -12.30312 -12.12233 -12.04439 -11.83574 -11.81204 -11.68173 -11.53569 -11.34150 -11.21682 -10.87224 -10.52957 -10.37610 -10.15210 -9.83003 -8.37313 -8.08838 -5.89255 0.25114 1.22563 1.43335 1.46416 1.59847 2.03732 2.41008 2.47571 3.03641 3.15985 3.24753 3.38842 3.73399 3.82500 3.91035 4.07351 4.09866 4.13200 4.26705 4.30359 4.34256 4.38986 4.43743 4.54576 4.56950 4.63121 4.67941 4.74335 4.76200 4.84005 4.86921 4.89722 4.93166 4.97693 5.01878 5.05228 5.13998 5.18522 5.27511 5.29280 5.33527 5.35057 5.43623 5.47899 5.51001 5.56449 5.91904 6.00668 6.16610 6.31259 6.62492 6.85882 7.14326 7.59470 8.11380 8.96949 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.024567 B = 0.001948 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.469325 B =14370.876005 C =14689.854853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.104 4.104 3 H 0.058 0.942 4 C -0.113 4.113 5 C -0.133 4.133 6 C 0.057 3.943 7 N -0.576 5.576 8 C 0.504 3.496 9 O -0.550 6.550 10 C 0.507 3.493 11 O -0.526 6.526 12 N -0.687 5.687 13 C 0.128 3.872 14 C -0.131 4.131 15 C 0.150 3.850 16 N -0.586 5.586 17 C -0.270 4.270 18 H 0.023 0.977 19 C 0.007 3.993 20 N -0.948 5.948 21 Si 0.950 3.050 22 H -0.259 1.259 23 H -0.316 1.316 24 H -0.254 1.254 25 C 0.101 3.899 26 C -0.217 4.217 27 C -0.192 4.192 28 C 0.107 3.893 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.052 0.948 36 H 0.081 0.919 37 H 0.134 0.866 38 H 0.416 0.584 39 H 0.085 0.915 40 H 0.071 0.929 41 H 0.047 0.953 42 H 0.070 0.930 43 H 0.048 0.952 44 H 0.069 0.931 45 H 0.264 0.736 46 H 0.121 0.879 47 H 0.077 0.923 48 H 0.098 0.902 49 H 0.110 0.890 50 H 0.065 0.935 51 H 0.079 0.921 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.498 -14.483 11.972 29.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.123 4.123 3 H 0.077 0.923 4 C -0.150 4.150 5 C -0.171 4.171 6 C -0.064 4.064 7 N -0.308 5.308 8 C 0.286 3.714 9 O -0.429 6.429 10 C 0.288 3.712 11 O -0.405 6.405 12 N -0.338 5.338 13 C 0.005 3.995 14 C -0.172 4.172 15 C 0.025 3.975 16 N -0.307 5.307 17 C -0.400 4.400 18 H 0.041 0.959 19 C -0.192 4.192 20 N -0.590 5.590 21 Si 0.776 3.224 22 H -0.184 1.184 23 H -0.245 1.245 24 H -0.178 1.178 25 C -0.005 4.005 26 C -0.255 4.255 27 C -0.232 4.232 28 C -0.014 4.014 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.112 0.888 35 H 0.071 0.929 36 H 0.099 0.901 37 H 0.150 0.850 38 H 0.253 0.747 39 H 0.103 0.897 40 H 0.090 0.910 41 H 0.066 0.934 42 H 0.089 0.911 43 H 0.067 0.933 44 H 0.087 0.913 45 H 0.073 0.927 46 H 0.138 0.862 47 H 0.095 0.905 48 H 0.116 0.884 49 H 0.128 0.872 50 H 0.084 0.916 51 H 0.098 0.902 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -22.263 -14.537 12.111 29.217 hybrid contribution 0.674 0.772 -0.673 1.226 sum -21.589 -13.765 11.438 28.042 Atomic orbital electron populations 1.21733 0.92674 1.02916 1.02509 1.21398 0.97250 0.99207 0.94448 0.92309 1.21625 0.94634 1.01458 0.97313 1.21932 0.96568 1.00676 0.97889 1.23130 1.03453 0.97395 0.82402 1.48124 1.07406 1.57600 1.17677 1.20141 0.87836 0.80036 0.83375 1.90745 1.75273 1.41167 1.35687 1.20157 0.87756 0.80617 0.82650 1.90423 1.75520 1.40094 1.34487 1.45955 1.08643 1.51859 1.27385 1.21477 0.77189 1.01507 0.99358 1.22158 0.97862 0.99977 0.97155 1.20939 0.90405 0.96525 0.89657 1.43646 1.69113 1.11246 1.06669 1.18243 0.91530 0.84355 1.45917 0.95942 1.26549 0.99521 0.97468 0.95618 1.69974 1.17742 1.19878 1.51398 0.85697 0.76817 0.80715 0.79166 1.18355 1.24489 1.17753 1.21630 1.02013 0.94770 0.82134 1.23369 0.96286 1.02400 1.03416 1.23323 0.92660 1.03293 1.03967 1.21907 0.77532 1.02211 0.99796 0.91382 0.92584 0.91320 0.90492 0.90482 0.88780 0.92911 0.90089 0.84970 0.74749 0.89694 0.91027 0.93427 0.91125 0.93322 0.91315 0.92731 0.86196 0.90505 0.88406 0.87211 0.91582 0.90208 0.89238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.20 71.98 0.66 -0.57 16 2 C -0.10 -1.30 2.86 -10.86 -0.03 -1.33 16 3 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 4 C -0.11 -1.14 5.17 30.62 0.16 -0.99 16 5 C -0.13 -1.72 6.08 30.67 0.19 -1.53 16 6 C 0.06 0.95 6.07 86.36 0.52 1.48 16 7 N -0.58 -11.56 2.98 -821.30 -2.45 -14.00 16 8 C 0.50 12.72 7.75 87.27 0.68 13.39 16 9 O -0.55 -16.31 15.90 -3.23 -0.05 -16.36 16 10 C 0.51 12.97 7.79 87.27 0.68 13.65 16 11 O -0.53 -14.22 13.07 -3.26 -0.04 -14.26 16 12 N -0.69 -17.01 5.55 -464.40 -2.58 -19.59 16 13 C 0.13 3.19 5.67 86.38 0.49 3.68 16 14 C -0.13 -3.92 5.65 30.59 0.17 -3.75 16 15 C 0.15 5.28 5.71 86.38 0.49 5.78 16 16 N -0.59 -25.77 2.03 -678.07 -1.38 -27.15 16 17 C -0.27 -14.81 9.11 84.03 0.77 -14.04 16 18 H 0.02 1.43 8.06 -2.91 -0.02 1.41 16 19 C 0.01 0.38 3.91 84.86 0.33 0.71 16 20 N -0.95 -58.15 13.97 21.65 0.30 -57.85 16 21 Si 0.95 44.93 24.65 68.60 1.69 46.62 16 22 H -0.26 -11.47 6.14 99.48 0.61 -10.86 16 23 H -0.32 -15.45 7.11 99.48 0.71 -14.74 16 24 H -0.25 -11.30 7.11 99.48 0.71 -10.59 16 25 C 0.10 3.93 5.07 44.99 0.23 4.16 16 26 C -0.22 -8.94 6.75 30.62 0.21 -8.74 16 27 C -0.19 -6.99 10.38 30.62 0.32 -6.67 16 28 C 0.11 1.71 5.70 86.22 0.49 2.20 16 29 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.13 2.80 4.10 -65.10 -0.27 2.53 16 38 H 0.42 10.05 7.95 -92.71 -0.74 9.31 16 39 H 0.08 1.94 8.14 -2.39 -0.02 1.93 16 40 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.07 2.03 8.14 -2.38 -0.02 2.02 16 43 H 0.05 1.81 8.04 -2.38 -0.02 1.80 16 44 H 0.07 2.04 8.07 -2.39 -0.02 2.02 16 45 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 46 H 0.12 3.91 8.14 -2.39 -0.02 3.89 16 47 H 0.08 3.88 5.27 -2.39 -0.01 3.87 16 48 H 0.10 3.54 7.96 -2.39 -0.02 3.52 16 49 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 50 H 0.07 2.70 8.14 -2.38 -0.02 2.68 16 51 H 0.08 1.53 7.00 -2.39 -0.02 1.51 16 52 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -67.76 404.55 1.66 -66.10 By element: Atomic # 1 Polarization: 29.26 SS G_CDS: -0.19 Total: 29.07 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: 6.35 Total: 7.43 kcal Atomic # 7 Polarization: -112.49 SS G_CDS: -6.10 Total: -118.59 kcal Atomic # 8 Polarization: -30.53 SS G_CDS: -0.09 Total: -30.62 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.69 Total: 46.62 kcal Total: -67.76 1.66 -66.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490386995.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.306 kcal (2) G-P(sol) polarization free energy of solvation -67.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds