Wall clock time and date at job start Tue Mar 31 2020 21:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.49904 * 2 1 4 4 C 1.53042 * 109.49429 * 239.92931 * 2 1 3 5 5 C 1.53042 * 109.53592 * 178.68464 * 4 2 1 6 6 C 1.53195 * 109.31361 * 61.36570 * 5 4 2 7 7 N 1.46917 * 108.77302 * 305.36609 * 6 5 4 8 8 C 1.34779 * 120.63013 * 233.57929 * 7 6 5 9 9 O 1.21349 * 120.00283 * 187.01376 * 8 7 6 10 10 C 1.49458 * 119.99862 * 7.01812 * 8 7 6 11 11 O 1.21351 * 119.99824 * 6.47248 * 10 8 7 12 12 N 1.34767 * 120.00080 * 186.47468 * 10 8 7 13 13 C 1.46501 * 120.00053 * 179.72497 * 12 10 8 14 14 C 1.53005 * 109.47196 * 180.27802 * 13 12 10 15 15 H 1.08995 * 109.59036 * 59.70847 * 14 13 12 16 16 C 1.53188 * 109.58885 * 179.97438 * 14 13 12 17 17 C 1.53034 * 109.31582 * 174.41969 * 16 14 13 18 18 C 1.53044 * 109.53751 * 298.62981 * 17 16 14 19 19 C 1.53192 * 109.30729 * 61.36611 * 18 17 16 20 20 N 1.46925 * 108.77963 * 305.36167 * 19 18 17 21 21 C 1.36931 * 120.63290 * 233.63587 * 20 19 18 22 22 H 1.08000 * 120.00284 * 141.71052 * 21 20 19 23 23 C 1.38814 * 120.00267 * 321.70688 * 21 20 19 24 24 N 1.31614 * 120.00329 * 174.21841 * 23 21 20 25 25 Si 1.86807 * 119.99687 * 354.21922 * 23 21 20 26 26 H 1.48499 * 109.47071 * 90.61600 * 25 23 21 27 27 H 1.48495 * 109.47154 * 210.61639 * 25 23 21 28 28 H 1.48501 * 109.47063 * 330.62027 * 25 23 21 29 29 C 1.46929 * 118.74205 * 53.86030 * 7 6 5 30 30 H 1.09000 * 109.47378 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46856 * 300.07084 * 1 2 3 32 32 H 1.08998 * 109.47248 * 60.06560 * 1 2 3 33 33 H 1.09007 * 109.45593 * 58.66859 * 4 2 1 34 34 H 1.08994 * 109.46533 * 298.70663 * 4 2 1 35 35 H 1.09007 * 109.50067 * 301.41400 * 5 4 2 36 36 H 1.09006 * 109.49812 * 181.32252 * 5 4 2 37 37 H 1.08999 * 109.58914 * 185.57492 * 6 5 4 38 38 H 1.09001 * 109.69586 * 65.22397 * 6 5 4 39 39 H 0.97008 * 119.99927 * 359.97438 * 12 10 8 40 40 H 1.09004 * 109.46816 * 300.27322 * 13 12 10 41 41 H 1.08988 * 109.47283 * 60.27464 * 13 12 10 42 42 H 1.09003 * 109.49356 * 294.36974 * 16 14 13 43 43 H 1.09000 * 109.49808 * 54.45824 * 16 14 13 44 44 H 1.09001 * 109.46050 * 58.65318 * 17 16 14 45 45 H 1.09003 * 109.46350 * 178.62646 * 17 16 14 46 46 H 1.08996 * 109.49556 * 181.31308 * 18 17 16 47 47 H 1.09001 * 109.49945 * 301.41821 * 18 17 16 48 48 H 1.09002 * 109.59162 * 65.15195 * 19 18 17 49 49 H 1.09007 * 109.58583 * 185.57568 * 19 18 17 50 50 H 0.97000 * 120.00162 * 179.97438 * 24 23 21 51 51 H 1.08997 * 109.58302 * 65.92526 * 29 7 6 52 52 H 1.08999 * 109.58617 * 186.34637 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0407 -0.7229 -1.2485 5 6 3.5708 -0.6949 -1.2662 6 6 4.1052 -1.4268 -0.0311 7 7 3.5046 -0.8295 1.1693 8 6 4.2811 -0.3870 2.1782 9 8 3.7739 -0.0136 3.2154 10 6 5.7669 -0.3563 2.0194 11 8 6.2678 -0.6171 0.9453 12 7 6.5504 -0.0391 3.0690 13 6 8.0070 -0.0148 2.9150 14 6 8.6547 0.3652 4.2481 15 1 8.3788 -0.3642 5.0095 16 6 10.1782 0.3907 4.0901 17 6 10.8127 0.9053 5.3842 18 6 10.3316 2.3321 5.6580 19 6 8.8098 2.3285 5.8338 20 7 8.1989 1.7019 4.6537 21 6 7.2236 2.3513 3.9451 22 1 7.1990 2.2777 2.8679 23 6 6.2664 3.1042 4.6112 24 7 5.3988 3.8197 3.9273 25 14 6.2096 3.1019 6.4784 26 1 7.0602 4.2014 7.0008 27 1 4.8095 3.3013 6.9313 28 1 6.7141 1.8013 6.9874 29 6 2.0410 -0.7292 1.2518 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5150 0.8894 32 1 -0.3633 0.5128 -0.8905 33 1 1.6581 -0.2240 -2.1390 34 1 1.6966 -1.7570 -1.2357 35 1 3.9160 0.3391 -1.2541 36 1 3.9334 -1.1893 -2.1674 37 1 5.1895 -1.3248 0.0135 38 1 3.8395 -2.4825 -0.0861 39 1 6.1499 0.1697 3.9276 40 1 8.3565 -1.0011 2.6094 41 1 8.2800 0.7185 2.1563 42 1 10.5394 -0.6167 3.8834 43 1 10.4474 1.0506 3.2654 44 1 10.5229 0.2590 6.2127 45 1 11.8980 0.9014 5.2831 46 1 10.8020 2.7063 6.5673 47 1 10.5994 2.9737 4.8186 48 1 8.5463 1.7612 6.7264 49 1 8.4508 3.3532 5.9304 50 1 4.7297 4.3455 4.3928 51 1 1.6084 -1.7286 1.2981 52 1 1.7630 -0.1668 2.1431 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491225150.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:17 Heat of formation + Delta-G solvation = -59.561663 kcal Electronic energy + Delta-G solvation = -31517.587703 eV Core-core repulsion = 27517.072797 eV Total energy + Delta-G solvation = -4000.514906 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.97308 -40.25830 -39.34064 -38.72734 -36.08572 -34.89719 -34.56768 -32.78874 -32.64631 -32.35980 -28.59791 -27.76845 -27.07950 -26.25570 -24.29437 -23.92812 -23.23947 -22.18505 -21.54551 -20.94488 -20.49904 -18.87416 -18.16319 -18.03768 -17.45031 -16.98349 -16.75670 -16.42101 -16.22064 -15.71553 -15.38220 -15.29160 -15.23764 -15.16023 -14.86619 -14.81537 -14.38172 -14.33813 -13.99523 -13.74642 -13.59268 -13.50708 -13.19974 -13.13421 -12.98303 -12.73314 -12.56008 -12.40403 -12.31998 -12.03396 -12.00135 -11.82067 -11.64613 -11.62384 -11.41999 -11.34239 -11.27650 -11.13302 -10.68403 -10.11749 -9.94858 -9.73292 -8.67855 -8.10076 -5.56431 0.41398 1.29515 1.39056 1.40899 1.48088 2.20192 2.43506 2.59752 3.16636 3.26074 3.41726 3.75192 3.82656 3.88808 3.94967 4.09341 4.11992 4.18620 4.31015 4.33392 4.42259 4.43002 4.52584 4.58211 4.61906 4.65774 4.69151 4.77164 4.85281 4.86963 4.87460 4.92408 4.96713 5.06344 5.08408 5.16791 5.19515 5.21806 5.27345 5.29361 5.32858 5.34301 5.39287 5.47590 5.63237 5.69027 5.97800 6.04012 6.24063 6.34446 6.78616 6.97381 7.04287 7.64907 8.08896 9.07614 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015578 B = 0.003658 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.019465 B = 7653.657523 C = 8891.555695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.107 4.107 3 H 0.045 0.955 4 C -0.108 4.108 5 C -0.128 4.128 6 C 0.045 3.955 7 N -0.580 5.580 8 C 0.498 3.502 9 O -0.551 6.551 10 C 0.504 3.496 11 O -0.538 6.538 12 N -0.657 5.657 13 C 0.134 3.866 14 C 0.159 3.841 15 H 0.052 0.948 16 C -0.122 4.122 17 C -0.104 4.104 18 C -0.131 4.131 19 C 0.116 3.884 20 N -0.620 5.620 21 C -0.231 4.231 22 H 0.049 0.951 23 C -0.022 4.022 24 N -0.955 5.955 25 Si 0.944 3.056 26 H -0.282 1.282 27 H -0.326 1.326 28 H -0.244 1.244 29 C 0.109 3.891 30 H 0.075 0.925 31 H 0.049 0.951 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.039 0.961 36 H 0.098 0.902 37 H 0.141 0.859 38 H 0.085 0.915 39 H 0.413 0.587 40 H 0.097 0.903 41 H 0.051 0.949 42 H 0.092 0.908 43 H 0.054 0.946 44 H 0.066 0.934 45 H 0.080 0.920 46 H 0.075 0.925 47 H 0.050 0.950 48 H 0.035 0.965 49 H 0.041 0.959 50 H 0.255 0.745 51 H 0.096 0.904 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.379 -14.053 -6.053 15.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.126 4.126 3 H 0.064 0.936 4 C -0.145 4.145 5 C -0.166 4.166 6 C -0.075 4.075 7 N -0.313 5.313 8 C 0.281 3.719 9 O -0.429 6.429 10 C 0.285 3.715 11 O -0.420 6.420 12 N -0.306 5.306 13 C 0.011 3.989 14 C 0.054 3.946 15 H 0.069 0.931 16 C -0.161 4.161 17 C -0.141 4.141 18 C -0.170 4.170 19 C -0.009 4.009 20 N -0.346 5.346 21 C -0.361 4.361 22 H 0.067 0.933 23 C -0.218 4.218 24 N -0.600 5.600 25 Si 0.774 3.226 26 H -0.209 1.209 27 H -0.256 1.256 28 H -0.168 1.168 29 C -0.013 4.013 30 H 0.094 0.906 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.058 0.942 36 H 0.117 0.883 37 H 0.158 0.842 38 H 0.103 0.897 39 H 0.250 0.750 40 H 0.115 0.885 41 H 0.069 0.931 42 H 0.110 0.890 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.099 0.901 46 H 0.093 0.907 47 H 0.069 0.931 48 H 0.053 0.947 49 H 0.059 0.941 50 H 0.064 0.936 51 H 0.114 0.886 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.372 -13.951 -6.219 15.279 hybrid contribution -0.828 1.323 1.280 2.019 sum -0.456 -12.627 -4.939 13.567 Atomic orbital electron populations 1.21719 0.92335 1.03150 1.02314 1.21579 0.97521 0.98662 0.94850 0.93646 1.21602 0.94526 1.01583 0.96806 1.21851 0.96553 1.00177 0.98066 1.23321 1.04759 0.96988 0.82429 1.48081 1.07084 1.57988 1.18108 1.20322 0.88581 0.78746 0.84228 1.90754 1.75502 1.47850 1.28776 1.20044 0.87858 0.78766 0.84800 1.90227 1.74932 1.51525 1.25353 1.45908 1.07875 1.63422 1.13379 1.21552 0.77669 1.01383 0.98303 1.21037 0.94273 0.85985 0.93340 0.93076 1.21895 0.93611 1.02153 0.98433 1.21372 1.00315 0.95146 0.97304 1.21942 0.95197 0.98385 1.01435 1.21516 0.93928 0.95933 0.89491 1.44491 1.43097 1.15179 1.31852 1.18503 1.02356 1.24932 0.90263 0.93291 1.26052 0.95445 0.99132 1.01172 1.69878 1.20733 1.32811 1.36581 0.86014 0.74171 0.79397 0.82991 1.20891 1.25646 1.16777 1.22025 0.78015 1.02027 0.99195 0.90631 0.93185 0.91151 0.90362 0.89731 0.94238 0.88328 0.84238 0.89651 0.75011 0.88516 0.93095 0.88966 0.92715 0.91577 0.90105 0.90668 0.93132 0.94674 0.94078 0.93576 0.88601 0.91635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.20 71.98 0.66 -1.78 16 2 C -0.11 -2.52 2.89 -10.57 -0.03 -2.55 16 3 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 4 C -0.11 -2.03 5.16 30.62 0.16 -1.87 16 5 C -0.13 -2.93 6.08 30.67 0.19 -2.74 16 6 C 0.05 1.20 6.27 86.37 0.54 1.74 16 7 N -0.58 -19.06 2.97 -819.65 -2.43 -21.49 16 8 C 0.50 20.67 7.74 87.27 0.68 21.34 16 9 O -0.55 -26.67 15.94 -3.24 -0.05 -26.72 16 10 C 0.50 20.72 7.78 87.27 0.68 21.40 16 11 O -0.54 -21.37 13.10 -3.25 -0.04 -21.42 16 12 N -0.66 -27.10 3.99 -464.41 -1.85 -28.95 16 13 C 0.13 4.76 4.44 86.38 0.38 5.14 16 14 C 0.16 5.44 3.01 44.97 0.14 5.57 16 15 H 0.05 1.67 8.14 -2.39 -0.02 1.66 16 16 C -0.12 -3.24 5.37 30.67 0.16 -3.08 16 17 C -0.10 -2.56 5.88 30.62 0.18 -2.38 16 18 C -0.13 -4.00 6.08 30.67 0.19 -3.81 16 19 C 0.12 4.60 4.12 86.36 0.36 4.96 16 20 N -0.62 -26.90 2.68 -675.21 -1.81 -28.71 16 21 C -0.23 -12.37 7.20 84.03 0.61 -11.77 16 22 H 0.05 2.98 6.46 -2.91 -0.02 2.96 16 23 C -0.02 -1.29 5.41 84.86 0.46 -0.83 16 24 N -0.95 -61.14 13.97 21.65 0.30 -60.84 16 25 Si 0.94 47.22 24.36 68.60 1.67 48.89 16 26 H -0.28 -13.53 6.80 99.48 0.68 -12.85 16 27 H -0.33 -17.36 7.11 99.48 0.71 -16.65 16 28 H -0.24 -11.19 5.91 99.48 0.59 -10.60 16 29 C 0.11 3.05 5.73 86.51 0.50 3.54 16 30 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 32 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 36 H 0.10 1.74 8.14 -2.38 -0.02 1.72 16 37 H 0.14 4.40 3.78 -78.87 -0.30 4.11 16 38 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.41 18.80 6.93 -92.70 -0.64 18.16 16 40 H 0.10 2.80 8.14 -2.38 -0.02 2.78 16 41 H 0.05 2.06 7.37 -2.39 -0.02 2.05 16 42 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 47 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 48 H 0.04 1.36 6.51 -2.39 -0.02 1.35 16 49 H 0.04 1.85 4.94 -2.38 -0.01 1.84 16 50 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 51 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 52 H 0.07 2.20 7.05 -2.39 -0.02 2.18 16 Total: -1.00 -71.98 387.08 1.46 -70.52 By element: Atomic # 1 Polarization: 36.00 SS G_CDS: -0.17 Total: 35.83 kcal Atomic # 6 Polarization: 27.04 SS G_CDS: 5.84 Total: 32.88 kcal Atomic # 7 Polarization: -134.20 SS G_CDS: -5.79 Total: -139.98 kcal Atomic # 8 Polarization: -48.04 SS G_CDS: -0.09 Total: -48.14 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 1.67 Total: 48.89 kcal Total: -71.98 1.46 -70.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491225150.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.958 kcal (2) G-P(sol) polarization free energy of solvation -71.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds