Wall clock time and date at job start Tue Mar 31 2020 22:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 115.55067 * 2 1 4 4 C 1.52999 * 117.51737 * 214.30034 * 2 1 3 5 5 C 1.53005 * 117.49765 * 145.67013 * 2 1 3 6 6 H 1.09005 * 117.49361 * 215.02494 * 5 2 1 7 7 C 1.50698 * 117.49963 * 0.02562 * 5 2 1 8 8 O 1.21281 * 119.99784 * 359.97438 * 7 5 2 9 9 N 1.34774 * 119.99944 * 180.02562 * 7 5 2 10 10 C 1.46924 * 120.63003 * 359.71435 * 9 7 5 11 11 C 1.53629 * 108.54476 * 126.37087 * 10 9 7 12 12 C 1.53037 * 109.23995 * 54.85553 * 11 10 9 13 13 C 1.52999 * 109.46280 * 178.49167 * 12 11 10 14 14 C 1.52998 * 109.47313 * 295.07080 * 13 12 11 15 15 N 1.46900 * 109.47081 * 179.97438 * 14 13 12 16 16 C 1.46907 * 110.99586 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.46618 * 180.02562 * 16 15 14 18 18 O 1.21290 * 120.00045 * 359.97438 * 17 16 15 19 19 N 1.34778 * 119.99807 * 180.02562 * 17 16 15 20 20 C 1.37095 * 120.00123 * 179.97438 * 19 17 16 21 21 H 1.07996 * 119.99889 * 0.02562 * 20 19 17 22 22 C 1.38945 * 119.99866 * 179.97438 * 20 19 17 23 23 N 1.31414 * 120.00327 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99874 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47036 * 90.00196 * 24 22 20 26 26 H 1.48500 * 109.47420 * 210.00397 * 24 22 20 27 27 H 1.48504 * 109.47375 * 330.00288 * 24 22 20 28 28 C 1.53040 * 109.53862 * 298.51500 * 12 11 10 29 29 C 1.46925 * 120.62997 * 179.97438 * 9 7 5 30 30 H 1.08996 * 109.46543 * 274.41652 * 1 2 3 31 31 H 1.08999 * 109.47163 * 34.41886 * 1 2 3 32 32 H 1.09000 * 109.46851 * 154.42084 * 1 2 3 33 33 H 1.09003 * 117.50034 * 0.02562 * 4 2 1 34 34 H 1.08995 * 117.49797 * 145.02727 * 4 2 1 35 35 H 1.09001 * 109.59145 * 246.20294 * 10 9 7 36 36 H 1.09001 * 109.59070 * 6.63062 * 10 9 7 37 37 H 1.09002 * 109.63200 * 294.87089 * 11 10 9 38 38 H 1.08997 * 109.45978 * 174.73986 * 11 10 9 39 39 H 1.08998 * 109.45880 * 58.53126 * 12 11 10 40 40 H 1.09005 * 109.46700 * 55.06762 * 13 12 11 41 41 H 1.09002 * 109.47284 * 175.06678 * 13 12 11 42 42 H 1.08996 * 109.46768 * 300.00084 * 14 13 12 43 43 H 1.09003 * 109.46789 * 59.99380 * 14 13 12 44 44 H 1.00900 * 110.99687 * 56.04813 * 15 14 13 45 45 H 1.08998 * 109.46948 * 300.00128 * 16 15 14 46 46 H 1.09004 * 109.46860 * 60.00414 * 16 15 14 47 47 H 0.97009 * 119.99855 * 359.97438 * 19 17 16 48 48 H 0.96994 * 119.99967 * 179.97438 * 23 22 20 49 49 H 1.08998 * 109.50059 * 301.40895 * 28 12 11 50 50 H 1.09006 * 109.52668 * 181.33208 * 28 12 11 51 51 H 1.08990 * 109.58574 * 353.37239 * 29 9 7 52 52 H 1.09000 * 109.58587 * 113.79769 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2369 -1.1209 -0.7647 5 6 2.2365 -1.1208 0.7654 6 1 3.1712 -0.8745 1.2692 7 6 1.3721 -2.1405 1.4611 8 8 0.1639 -2.0531 1.4014 9 7 1.9416 -3.1489 2.1503 10 6 3.4037 -3.2709 2.2274 11 6 3.8096 -3.3566 3.7066 12 6 3.0475 -4.5043 4.3730 13 6 3.4759 -4.6183 5.8373 14 6 4.9517 -5.0156 5.9076 15 7 5.3631 -5.1244 7.3136 16 6 6.7778 -5.5059 7.4201 17 6 7.1624 -5.6080 8.8737 18 8 6.3391 -5.3846 9.7359 19 7 8.4213 -5.9467 9.2154 20 6 8.7714 -6.0391 10.5377 21 1 8.0382 -5.8410 11.3055 22 6 10.0692 -6.3888 10.8900 23 7 10.9612 -6.6304 9.9557 24 14 10.5459 -6.5154 12.6917 25 1 10.3077 -7.9008 13.1705 26 1 11.9836 -6.1779 12.8483 27 1 9.7255 -5.5683 13.4886 28 6 1.5437 -4.2297 4.3016 29 6 1.1121 -4.1504 2.8342 30 1 -0.3632 0.0791 1.0246 31 1 -0.3633 0.8477 -0.5809 32 1 -0.3633 -0.9270 -0.4437 33 1 1.6120 -1.8585 -1.2683 34 1 3.1721 -0.8750 -1.2677 35 1 3.7233 -4.1728 1.7052 36 1 3.8680 -2.3974 1.7697 37 1 3.5671 -2.4195 4.2078 38 1 4.8814 -3.5412 3.7789 39 1 3.2712 -5.4373 3.8557 40 1 3.3342 -3.6579 6.3331 41 1 2.8713 -5.3767 6.3348 42 1 5.0934 -5.9759 5.4118 43 1 5.5562 -4.2572 5.4101 44 1 4.7750 -5.7746 7.8131 45 1 6.9316 -6.4699 6.9353 46 1 7.3952 -4.7513 6.9327 47 1 9.0798 -6.1250 8.5257 48 1 11.8672 -6.8741 10.2017 49 1 1.3225 -3.2844 4.7972 50 1 1.0022 -5.0356 4.7971 51 1 0.0639 -3.8573 2.7770 52 1 1.2482 -5.1226 2.3606 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495395035.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:46 Heat of formation + Delta-G solvation = -59.565221 kcal Electronic energy + Delta-G solvation = -28508.330569 eV Core-core repulsion = 24507.815509 eV Total energy + Delta-G solvation = -4000.515060 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.84020 -38.83278 -38.23329 -36.84961 -35.87041 -34.11735 -33.60877 -31.61540 -31.22629 -29.85673 -28.82677 -26.82144 -25.38709 -24.28626 -23.62377 -23.11171 -21.69672 -21.17782 -20.46288 -19.21053 -18.99693 -17.89175 -17.79199 -16.21391 -16.14294 -15.90755 -15.69891 -15.11997 -14.80487 -14.70078 -14.55721 -14.38518 -14.11550 -13.89721 -13.81316 -13.47782 -13.31522 -13.11707 -12.96877 -12.93478 -12.54844 -12.48478 -12.16315 -11.87334 -11.86497 -11.61032 -11.54677 -11.51781 -11.28048 -11.05400 -10.99346 -10.69012 -10.65989 -10.49666 -10.39563 -10.34215 -10.21854 -9.81277 -9.51282 -8.96949 -8.45986 -8.04775 -7.95895 -6.42104 -3.82912 2.16100 2.59852 3.17573 3.26209 3.32396 3.37286 3.90832 4.03143 4.06967 4.20968 4.26426 4.38474 4.41008 4.49583 4.61858 4.66053 4.75803 4.90262 4.98339 5.04527 5.08782 5.09775 5.22976 5.24539 5.28962 5.31261 5.37988 5.39494 5.46582 5.49684 5.52559 5.57585 5.65257 5.70826 5.74970 5.77385 5.78962 5.80150 5.94717 5.99723 6.08206 6.16060 6.23332 6.24655 6.29610 7.05513 7.24284 7.54919 7.67817 7.87467 8.06255 8.61195 9.17684 9.54142 10.05772 10.75672 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.029189 B = 0.001498 C = 0.001463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.033846 B =18681.359244 C =19131.725292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.119 4.119 3 H 0.111 0.889 4 C -0.150 4.150 5 C -0.196 4.196 6 H 0.125 0.875 7 C 0.545 3.455 8 O -0.538 6.538 9 N -0.608 5.608 10 C 0.106 3.894 11 C -0.133 4.133 12 C -0.085 4.085 13 C -0.112 4.112 14 C 0.058 3.942 15 N -0.671 5.671 16 C 0.051 3.949 17 C 0.440 3.560 18 O -0.583 6.583 19 N -0.564 5.564 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.269 1.269 28 C -0.129 4.129 29 C 0.112 3.888 30 H 0.067 0.933 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.024 0.976 43 H 0.071 0.929 44 H 0.348 0.652 45 H 0.042 0.958 46 H 0.085 0.915 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.068 0.932 50 H 0.076 0.924 51 H 0.091 0.909 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.444 7.666 -23.844 29.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.138 4.138 3 H 0.129 0.871 4 C -0.188 4.188 5 C -0.217 4.217 6 H 0.142 0.858 7 C 0.334 3.666 8 O -0.416 6.416 9 N -0.341 5.341 10 C -0.017 4.017 11 C -0.171 4.171 12 C -0.104 4.104 13 C -0.150 4.150 14 C -0.071 4.071 15 N -0.303 5.303 16 C -0.082 4.082 17 C 0.226 3.774 18 O -0.467 6.467 19 N -0.201 5.201 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.167 4.167 29 C -0.011 4.011 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.117 0.883 34 H 0.122 0.878 35 H 0.088 0.912 36 H 0.105 0.895 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.042 0.958 43 H 0.089 0.911 44 H 0.167 0.833 45 H 0.060 0.940 46 H 0.103 0.897 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.087 0.913 50 H 0.095 0.905 51 H 0.110 0.890 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.312 8.471 -23.188 29.589 hybrid contribution 1.106 -1.260 0.315 1.706 sum -15.206 7.211 -22.873 28.397 Atomic orbital electron populations 1.21358 0.91451 1.01393 1.02615 1.22392 0.96650 0.93588 1.01148 0.87093 1.23077 1.03135 1.01952 0.90619 1.22334 1.02238 1.01312 0.95847 0.85753 1.19676 0.87905 0.80860 0.78159 1.90691 1.14566 1.74663 1.61671 1.48087 1.07262 1.27203 1.51554 1.21929 0.79526 1.02754 0.97490 1.22140 1.00875 0.99610 0.94516 1.21114 0.94476 0.98452 0.96332 1.21586 0.95513 1.02812 0.95079 1.22026 0.95904 0.99394 0.89775 1.60086 1.02887 1.56248 1.11073 1.21665 0.90460 0.99437 0.96607 1.19837 0.83684 0.84252 0.89645 1.90521 1.50416 1.54845 1.50958 1.41868 1.09254 1.60404 1.08563 1.19712 0.95938 1.43798 0.83489 0.87923 1.25258 0.95515 0.97198 0.99956 1.69611 1.04425 1.47299 1.33031 0.85854 0.77604 0.78697 0.82113 1.20431 1.20919 1.19401 1.21961 0.96076 1.02854 0.95791 1.21602 0.96283 0.91110 0.92056 0.91380 0.93253 0.91832 0.88300 0.87782 0.91174 0.89512 0.91139 0.90077 0.91018 0.90850 0.91838 0.95787 0.91095 0.83264 0.93996 0.89702 0.77471 0.91889 0.91324 0.90522 0.89037 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 8.43 37.16 0.31 -0.61 16 2 C -0.12 -0.82 6.41 -90.61 -0.58 -1.40 16 3 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 4 C -0.15 -0.88 9.88 -26.73 -0.26 -1.15 16 5 C -0.20 -1.39 5.12 -91.77 -0.47 -1.86 16 6 H 0.12 0.68 6.58 -51.93 -0.34 0.34 16 7 C 0.55 5.27 7.46 -10.99 -0.08 5.19 16 8 O -0.54 -6.77 12.52 5.56 0.07 -6.70 16 9 N -0.61 -4.96 2.97 -172.53 -0.51 -5.47 16 10 C 0.11 0.65 6.37 -3.48 -0.02 0.62 16 11 C -0.13 -0.92 5.16 -26.39 -0.14 -1.06 16 12 C -0.08 -0.64 2.15 -90.58 -0.19 -0.83 16 13 C -0.11 -1.09 4.94 -26.73 -0.13 -1.22 16 14 C 0.06 0.67 5.44 -3.83 -0.02 0.65 16 15 N -0.67 -10.75 6.13 -115.05 -0.70 -11.45 16 16 C 0.05 0.90 6.17 -4.97 -0.03 0.87 16 17 C 0.44 10.46 7.82 -10.98 -0.09 10.38 16 18 O -0.58 -15.99 15.78 5.55 0.09 -15.91 16 19 N -0.56 -14.35 5.29 -10.97 -0.06 -14.41 16 20 C -0.30 -8.40 9.68 -14.94 -0.14 -8.55 16 21 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.50 13.05 55.50 0.72 -23.78 16 24 Si 0.93 21.05 29.55 -169.99 -5.02 16.02 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 28 C -0.13 -0.98 5.36 -26.63 -0.14 -1.12 16 29 C 0.11 0.89 6.43 -3.73 -0.02 0.87 16 30 H 0.07 0.68 7.26 -51.93 -0.38 0.30 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.61 7.01 -51.93 -0.36 0.24 16 33 H 0.10 0.65 8.05 -51.93 -0.42 0.23 16 34 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.09 0.42 5.51 -51.93 -0.29 0.13 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.53 6.50 -51.93 -0.34 0.20 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.07 0.77 6.53 -51.93 -0.34 0.43 16 44 H 0.35 5.79 8.43 -39.29 -0.33 5.45 16 45 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 47 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 48 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 49 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 51 H 0.09 0.85 7.00 -51.93 -0.36 0.49 16 52 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 409.15 15.07 6.17 6.17 Total: -1.00 -32.88 409.15 -10.27 -43.15 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: -8.91 Total: 11.10 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -2.11 Total: 1.28 kcal Atomic # 7 Polarization: -54.56 SS G_CDS: -0.55 Total: -55.11 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: 0.16 Total: -22.61 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.88 -10.27 -43.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495395035.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.412 kcal (2) G-P(sol) polarization free energy of solvation -32.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds