Wall clock time and date at job start Tue Mar 31 2020 22:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 115.55067 * 2 1 4 4 C 1.52999 * 117.51737 * 214.30034 * 2 1 3 5 5 C 1.53005 * 117.49765 * 145.67013 * 2 1 3 6 6 H 1.09005 * 117.49361 * 215.02494 * 5 2 1 7 7 C 1.50698 * 117.49963 * 0.02562 * 5 2 1 8 8 O 1.21281 * 119.99784 * 359.97438 * 7 5 2 9 9 N 1.34774 * 119.99944 * 180.02562 * 7 5 2 10 10 C 1.46924 * 120.63003 * 359.71435 * 9 7 5 11 11 C 1.53629 * 108.54476 * 126.37087 * 10 9 7 12 12 C 1.53037 * 109.23995 * 54.85553 * 11 10 9 13 13 C 1.52999 * 109.46280 * 178.49167 * 12 11 10 14 14 C 1.52998 * 109.47313 * 295.07080 * 13 12 11 15 15 N 1.46900 * 109.47081 * 179.97438 * 14 13 12 16 16 C 1.46907 * 110.99586 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.46618 * 180.02562 * 16 15 14 18 18 O 1.21290 * 120.00045 * 359.97438 * 17 16 15 19 19 N 1.34778 * 119.99807 * 180.02562 * 17 16 15 20 20 C 1.37095 * 120.00123 * 179.97438 * 19 17 16 21 21 H 1.07996 * 119.99889 * 0.02562 * 20 19 17 22 22 C 1.38945 * 119.99866 * 179.97438 * 20 19 17 23 23 N 1.31414 * 120.00327 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99874 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47036 * 90.00196 * 24 22 20 26 26 H 1.48500 * 109.47420 * 210.00397 * 24 22 20 27 27 H 1.48504 * 109.47375 * 330.00288 * 24 22 20 28 28 C 1.53040 * 109.53862 * 298.51500 * 12 11 10 29 29 C 1.46925 * 120.62997 * 179.97438 * 9 7 5 30 30 H 1.08996 * 109.46543 * 274.41652 * 1 2 3 31 31 H 1.08999 * 109.47163 * 34.41886 * 1 2 3 32 32 H 1.09000 * 109.46851 * 154.42084 * 1 2 3 33 33 H 1.09003 * 117.50034 * 0.02562 * 4 2 1 34 34 H 1.08995 * 117.49797 * 145.02727 * 4 2 1 35 35 H 1.09001 * 109.59145 * 246.20294 * 10 9 7 36 36 H 1.09001 * 109.59070 * 6.63062 * 10 9 7 37 37 H 1.09002 * 109.63200 * 294.87089 * 11 10 9 38 38 H 1.08997 * 109.45978 * 174.73986 * 11 10 9 39 39 H 1.08998 * 109.45880 * 58.53126 * 12 11 10 40 40 H 1.09005 * 109.46700 * 55.06762 * 13 12 11 41 41 H 1.09002 * 109.47284 * 175.06678 * 13 12 11 42 42 H 1.08996 * 109.46768 * 300.00084 * 14 13 12 43 43 H 1.09003 * 109.46789 * 59.99380 * 14 13 12 44 44 H 1.00900 * 110.99687 * 56.04813 * 15 14 13 45 45 H 1.08998 * 109.46948 * 300.00128 * 16 15 14 46 46 H 1.09004 * 109.46860 * 60.00414 * 16 15 14 47 47 H 0.97009 * 119.99855 * 359.97438 * 19 17 16 48 48 H 0.96994 * 119.99967 * 179.97438 * 23 22 20 49 49 H 1.08998 * 109.50059 * 301.40895 * 28 12 11 50 50 H 1.09006 * 109.52668 * 181.33208 * 28 12 11 51 51 H 1.08990 * 109.58574 * 353.37239 * 29 9 7 52 52 H 1.09000 * 109.58587 * 113.79769 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2369 -1.1209 -0.7647 5 6 2.2365 -1.1208 0.7654 6 1 3.1712 -0.8745 1.2692 7 6 1.3721 -2.1405 1.4611 8 8 0.1639 -2.0531 1.4014 9 7 1.9416 -3.1489 2.1503 10 6 3.4037 -3.2709 2.2274 11 6 3.8096 -3.3566 3.7066 12 6 3.0475 -4.5043 4.3730 13 6 3.4759 -4.6183 5.8373 14 6 4.9517 -5.0156 5.9076 15 7 5.3631 -5.1244 7.3136 16 6 6.7778 -5.5059 7.4201 17 6 7.1624 -5.6080 8.8737 18 8 6.3391 -5.3846 9.7359 19 7 8.4213 -5.9467 9.2154 20 6 8.7714 -6.0391 10.5377 21 1 8.0382 -5.8410 11.3055 22 6 10.0692 -6.3888 10.8900 23 7 10.9612 -6.6304 9.9557 24 14 10.5459 -6.5154 12.6917 25 1 10.3077 -7.9008 13.1705 26 1 11.9836 -6.1779 12.8483 27 1 9.7255 -5.5683 13.4886 28 6 1.5437 -4.2297 4.3016 29 6 1.1121 -4.1504 2.8342 30 1 -0.3632 0.0791 1.0246 31 1 -0.3633 0.8477 -0.5809 32 1 -0.3633 -0.9270 -0.4437 33 1 1.6120 -1.8585 -1.2683 34 1 3.1721 -0.8750 -1.2677 35 1 3.7233 -4.1728 1.7052 36 1 3.8680 -2.3974 1.7697 37 1 3.5671 -2.4195 4.2078 38 1 4.8814 -3.5412 3.7789 39 1 3.2712 -5.4373 3.8557 40 1 3.3342 -3.6579 6.3331 41 1 2.8713 -5.3767 6.3348 42 1 5.0934 -5.9759 5.4118 43 1 5.5562 -4.2572 5.4101 44 1 4.7750 -5.7746 7.8131 45 1 6.9316 -6.4699 6.9353 46 1 7.3952 -4.7513 6.9327 47 1 9.0798 -6.1250 8.5257 48 1 11.8672 -6.8741 10.2017 49 1 1.3225 -3.2844 4.7972 50 1 1.0022 -5.0356 4.7971 51 1 0.0639 -3.8573 2.7770 52 1 1.2482 -5.1226 2.3606 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495395035.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:43 Heat of formation + Delta-G solvation = -81.212421 kcal Electronic energy + Delta-G solvation = -28509.269262 eV Core-core repulsion = 24507.815509 eV Total energy + Delta-G solvation = -4001.453753 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.48853 -40.17051 -39.39333 -37.55742 -36.91765 -35.91935 -34.70427 -33.26284 -32.22987 -30.78686 -29.50344 -28.12758 -26.55948 -25.49000 -24.28641 -24.02823 -22.40428 -21.83624 -21.21332 -20.92961 -19.89876 -19.61756 -18.41448 -17.81230 -17.09581 -16.77980 -16.48476 -16.47409 -16.01224 -15.84811 -15.59196 -15.34803 -15.18828 -15.02568 -14.83479 -14.42427 -14.31607 -13.94049 -13.90688 -13.68747 -13.56001 -13.48251 -13.19618 -13.13827 -12.98678 -12.86757 -12.52070 -12.41820 -12.37593 -12.19391 -12.12408 -12.09637 -11.73200 -11.50985 -11.35932 -11.22188 -11.16721 -10.88918 -10.51797 -10.34730 -10.01573 -9.61992 -9.28693 -8.46789 -5.95633 1.38201 1.42211 1.49437 1.54906 2.00215 2.05321 2.29528 2.84400 2.94687 3.20518 3.47222 3.52904 3.69276 3.80559 3.84439 3.91236 3.96916 4.10434 4.14702 4.28131 4.30882 4.37543 4.44273 4.47638 4.50129 4.54591 4.57517 4.65973 4.73005 4.76101 4.84390 4.85636 4.87990 4.94146 4.96451 5.02049 5.05015 5.10617 5.15733 5.18014 5.21841 5.33860 5.40951 5.50567 5.55694 5.61757 5.91572 6.14542 6.42240 6.43662 6.60406 7.12649 7.19325 7.56272 8.11888 8.70530 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.029189 B = 0.001498 C = 0.001463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.033846 B =18681.359244 C =19131.725292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.129 4.129 3 H 0.131 0.869 4 C -0.134 4.134 5 C -0.202 4.202 6 H 0.146 0.854 7 C 0.534 3.466 8 O -0.579 6.579 9 N -0.608 5.608 10 C 0.106 3.894 11 C -0.131 4.131 12 C -0.076 4.076 13 C -0.105 4.105 14 C 0.061 3.939 15 N -0.689 5.689 16 C 0.066 3.934 17 C 0.435 3.565 18 O -0.626 6.626 19 N -0.573 5.573 20 C -0.337 4.337 21 H 0.078 0.922 22 C -0.011 4.011 23 N -0.919 5.919 24 Si 0.993 3.007 25 H -0.270 1.270 26 H -0.270 1.270 27 H -0.274 1.274 28 C -0.122 4.122 29 C 0.112 3.888 30 H 0.043 0.957 31 H 0.063 0.937 32 H 0.044 0.956 33 H 0.088 0.912 34 H 0.131 0.869 35 H 0.085 0.915 36 H 0.104 0.896 37 H 0.057 0.943 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.056 0.944 41 H 0.060 0.940 42 H 0.040 0.960 43 H 0.082 0.918 44 H 0.342 0.658 45 H 0.067 0.933 46 H 0.105 0.895 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.051 0.949 50 H 0.082 0.918 51 H 0.071 0.929 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.748 7.557 -25.402 29.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.148 4.148 3 H 0.149 0.851 4 C -0.172 4.172 5 C -0.222 4.222 6 H 0.163 0.837 7 C 0.324 3.676 8 O -0.459 6.459 9 N -0.340 5.340 10 C -0.016 4.016 11 C -0.169 4.169 12 C -0.095 4.095 13 C -0.143 4.143 14 C -0.067 4.067 15 N -0.321 5.321 16 C -0.066 4.066 17 C 0.223 3.777 18 O -0.512 6.512 19 N -0.210 5.210 20 C -0.466 4.466 21 H 0.096 0.904 22 C -0.211 4.211 23 N -0.560 5.560 24 Si 0.816 3.184 25 H -0.196 1.196 26 H -0.195 1.195 27 H -0.199 1.199 28 C -0.160 4.160 29 C -0.011 4.011 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.106 0.894 34 H 0.149 0.851 35 H 0.103 0.897 36 H 0.122 0.878 37 H 0.076 0.924 38 H 0.110 0.890 39 H 0.103 0.897 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.058 0.942 43 H 0.100 0.900 44 H 0.160 0.840 45 H 0.084 0.916 46 H 0.123 0.877 47 H 0.231 0.769 48 H 0.087 0.913 49 H 0.070 0.930 50 H 0.101 0.899 51 H 0.090 0.910 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.584 8.350 -24.779 29.940 hybrid contribution 0.511 -1.229 0.785 1.545 sum -14.073 7.120 -23.995 28.714 Atomic orbital electron populations 1.21256 0.93082 1.00951 1.01101 1.22492 0.95543 0.94813 1.01926 0.85100 1.23142 1.03725 1.00650 0.89656 1.22402 1.02497 1.00700 0.96648 0.83671 1.20235 0.87798 0.81425 0.78163 1.90676 1.16371 1.75682 1.63207 1.48219 1.08294 1.26657 1.50809 1.22095 0.78057 1.04344 0.97111 1.22117 1.01293 0.98597 0.94867 1.21047 0.94144 0.99441 0.94917 1.21507 0.94623 1.01713 0.96450 1.22120 0.96761 1.00575 0.87245 1.60109 1.01889 1.56202 1.13921 1.21528 0.91772 1.01442 0.91889 1.20966 0.82528 0.82063 0.92140 1.90488 1.51406 1.56185 1.53137 1.41933 1.10145 1.61019 1.07890 1.19673 0.96359 1.46165 0.84413 0.90432 1.26022 0.94902 0.96112 1.04080 1.69665 1.04781 1.46912 1.34637 0.84933 0.77630 0.78740 0.77058 1.19589 1.19455 1.19915 1.21888 0.96482 1.02239 0.95440 1.21574 0.95395 0.91694 0.92388 0.93755 0.91858 0.93723 0.89395 0.85086 0.89669 0.87794 0.92407 0.89025 0.89708 0.92541 0.92143 0.94172 0.89990 0.84009 0.91562 0.87736 0.76904 0.91264 0.92983 0.89897 0.91041 0.90192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.82 8.43 71.98 0.61 -1.21 16 2 C -0.13 -1.60 6.41 -10.79 -0.07 -1.67 16 3 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 4 C -0.13 -1.29 9.88 30.60 0.30 -0.99 16 5 C -0.20 -2.52 5.12 -11.54 -0.06 -2.58 16 6 H 0.15 1.17 6.58 -2.38 -0.02 1.15 16 7 C 0.53 10.18 7.46 87.66 0.65 10.83 16 8 O -0.58 -15.31 12.52 -3.03 -0.04 -15.34 16 9 N -0.61 -9.28 2.97 -818.16 -2.43 -11.71 16 10 C 0.11 1.01 6.37 86.51 0.55 1.56 16 11 C -0.13 -1.50 5.16 30.82 0.16 -1.34 16 12 C -0.08 -1.01 2.15 -10.77 -0.02 -1.03 16 13 C -0.10 -1.90 4.94 30.59 0.15 -1.75 16 14 C 0.06 1.26 5.44 86.30 0.47 1.73 16 15 N -0.69 -21.15 6.13 -517.91 -3.17 -24.32 16 16 C 0.07 2.21 6.17 85.56 0.53 2.74 16 17 C 0.44 20.73 7.82 87.66 0.69 21.42 16 18 O -0.63 -35.03 15.78 -3.06 -0.05 -35.07 16 19 N -0.57 -29.33 5.29 -306.99 -1.62 -30.95 16 20 C -0.34 -19.17 9.68 84.04 0.81 -18.36 16 21 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 22 C -0.01 -0.60 5.50 84.92 0.47 -0.13 16 23 N -0.92 -49.19 13.05 21.66 0.28 -48.90 16 24 Si 0.99 42.78 29.55 68.60 2.03 44.80 16 25 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 26 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 27 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 28 C -0.12 -1.78 5.36 30.66 0.16 -1.62 16 29 C 0.11 1.73 6.43 86.35 0.55 2.29 16 30 H 0.04 0.95 7.26 -2.39 -0.02 0.93 16 31 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.04 0.91 7.01 -2.39 -0.02 0.89 16 33 H 0.09 1.06 8.05 -2.39 -0.02 1.04 16 34 H 0.13 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.10 0.65 5.51 -2.39 -0.01 0.64 16 37 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.09 0.89 6.50 -2.39 -0.02 0.88 16 39 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 41 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.08 1.52 6.53 -2.39 -0.02 1.50 16 44 H 0.34 11.17 8.43 -89.69 -0.76 10.41 16 45 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 46 H 0.10 3.11 8.14 -2.38 -0.02 3.09 16 47 H 0.40 19.15 7.90 -92.70 -0.73 18.42 16 48 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 49 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 50 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 51 H 0.07 1.41 7.00 -2.39 -0.02 1.39 16 52 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -73.20 409.15 0.40 -72.81 By element: Atomic # 1 Polarization: 39.36 SS G_CDS: -0.56 Total: 38.80 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: 5.96 Total: 9.89 kcal Atomic # 7 Polarization: -108.94 SS G_CDS: -6.94 Total: -115.88 kcal Atomic # 8 Polarization: -50.33 SS G_CDS: -0.09 Total: -50.42 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Total: -73.20 0.40 -72.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495395035.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.406 kcal (2) G-P(sol) polarization free energy of solvation -73.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds