Wall clock time and date at job start Tue Mar 31 2020 22:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 115.55153 * 2 1 4 4 C 1.53001 * 117.50135 * 214.32621 * 2 1 3 5 5 C 1.53000 * 117.49905 * 145.66631 * 2 1 3 6 6 H 1.09001 * 117.49936 * 214.98052 * 5 2 1 7 7 C 1.50707 * 117.49785 * 0.02562 * 5 2 1 8 8 O 1.21277 * 119.99830 * 359.97438 * 7 5 2 9 9 N 1.34778 * 119.99781 * 180.02562 * 7 5 2 10 10 C 1.46499 * 119.99717 * 180.02562 * 9 7 5 11 11 C 1.52996 * 109.46850 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.52690 * 59.87420 * 11 10 9 13 13 C 1.53117 * 109.52592 * 299.67727 * 11 10 9 14 14 C 1.53037 * 109.28121 * 182.44224 * 13 11 10 15 15 N 1.46846 * 109.52294 * 59.18398 * 14 13 11 16 16 C 1.46900 * 111.00075 * 174.16265 * 15 14 13 17 17 C 1.50702 * 109.47018 * 294.20855 * 16 15 14 18 18 O 1.21291 * 119.99798 * 359.97438 * 17 16 15 19 19 N 1.34770 * 119.99954 * 180.02562 * 17 16 15 20 20 C 1.37105 * 119.99891 * 179.97438 * 19 17 16 21 21 H 1.08000 * 119.99587 * 0.02562 * 20 19 17 22 22 C 1.38945 * 119.99899 * 179.97438 * 20 19 17 23 23 N 1.31413 * 119.99994 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00123 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47053 * 90.00322 * 24 22 20 26 26 H 1.48500 * 109.47697 * 210.00394 * 24 22 20 27 27 H 1.48505 * 109.47187 * 330.00809 * 24 22 20 28 28 C 1.46854 * 111.19674 * 298.25852 * 15 14 13 29 29 C 1.53038 * 109.52275 * 61.73932 * 28 15 14 30 30 H 1.09002 * 109.47153 * 154.41786 * 1 2 3 31 31 H 1.09001 * 109.46832 * 34.41977 * 1 2 3 32 32 H 1.09004 * 109.47261 * 274.41958 * 1 2 3 33 33 H 1.09002 * 117.49734 * 0.02562 * 4 2 1 34 34 H 1.09003 * 117.49880 * 144.99582 * 4 2 1 35 35 H 0.96996 * 120.00263 * 359.97438 * 9 7 5 36 36 H 1.09001 * 109.46946 * 299.99779 * 10 9 7 37 37 H 1.09005 * 109.47406 * 59.99460 * 10 9 7 38 38 H 1.09000 * 109.46816 * 59.99251 * 12 11 10 39 39 H 1.08994 * 109.47433 * 179.97438 * 12 11 10 40 40 H 1.08998 * 109.46558 * 300.00328 * 12 11 10 41 41 H 1.08999 * 109.50649 * 302.38800 * 13 11 10 42 42 H 1.09004 * 109.49599 * 62.50087 * 13 11 10 43 43 H 1.09003 * 109.46095 * 299.16465 * 14 13 11 44 44 H 1.09002 * 109.45491 * 179.19553 * 14 13 11 45 45 H 1.09003 * 109.47314 * 54.20575 * 16 15 14 46 46 H 1.08999 * 109.47343 * 174.21171 * 16 15 14 47 47 H 0.96998 * 120.00464 * 359.97438 * 19 17 16 48 48 H 0.97000 * 119.99909 * 179.97438 * 23 22 20 49 49 H 1.08998 * 109.45927 * 301.72485 * 28 15 14 50 50 H 1.08996 * 109.45896 * 181.76003 * 28 15 14 51 51 H 1.08998 * 109.50222 * 180.87880 * 29 28 15 52 52 H 1.09002 * 109.53236 * 60.78521 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1208 -0.7653 5 6 2.2364 -1.1207 0.7654 6 1 3.1715 -0.8746 1.2687 7 6 1.3719 -2.1404 1.4612 8 8 0.1638 -2.0530 1.4015 9 7 1.9415 -3.1488 2.1506 10 6 1.1012 -4.1404 2.8264 11 6 1.9902 -5.1684 3.5289 12 6 2.8754 -4.4614 4.5572 13 6 2.8701 -5.8759 2.4945 14 6 3.7127 -6.9447 3.1943 15 7 2.8277 -7.9128 3.8544 16 6 3.5971 -9.0294 4.4195 17 6 4.2312 -9.8184 3.3030 18 8 4.0586 -9.4837 2.1500 19 7 4.9890 -10.8964 3.5856 20 6 5.5655 -11.6144 2.5698 21 1 5.4125 -11.3159 1.5432 22 6 6.3472 -12.7255 2.8612 23 7 6.5337 -13.0884 4.1104 24 14 7.1320 -13.7043 1.4773 25 1 8.4755 -13.1473 1.1771 26 1 7.2659 -15.1247 1.8894 27 1 6.2787 -13.6190 0.2649 28 6 2.0065 -7.2648 4.8851 29 6 1.1130 -6.2054 4.2358 30 1 -0.3633 -0.9269 -0.4438 31 1 -0.3633 0.8478 -0.5809 32 1 -0.3634 0.0792 1.0246 33 1 1.6113 -1.8579 -1.2691 34 1 3.1714 -0.8747 -1.2688 35 1 2.9078 -3.2185 2.1986 36 1 0.4708 -3.6413 3.5624 37 1 0.4728 -4.6450 2.0925 38 1 2.2474 -3.9608 5.2941 39 1 3.5080 -5.1946 5.0574 40 1 3.5010 -3.7249 4.0528 41 1 2.2390 -6.3460 1.7404 42 1 3.5274 -5.1487 2.0178 43 1 4.3536 -6.4721 3.9386 44 1 4.3299 -7.4599 2.4582 45 1 4.3749 -8.6393 5.0759 46 1 2.9316 -9.6774 4.9898 47 1 5.1267 -11.1642 4.5077 48 1 7.0792 -13.8642 4.3138 49 1 2.6554 -6.7908 5.6215 50 1 1.3846 -8.0125 5.3771 51 1 0.5149 -5.7139 5.0031 52 1 0.4537 -6.6804 3.5092 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500411380.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:51 Heat of formation + Delta-G solvation = -52.147400 kcal Electronic energy + Delta-G solvation = -29696.225026 eV Core-core repulsion = 25696.031627 eV Total energy + Delta-G solvation = -4000.193399 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.58243 -39.68304 -38.10259 -36.92512 -35.53706 -33.94623 -33.22880 -31.25094 -30.73727 -29.18996 -28.56306 -27.35098 -26.11480 -24.42777 -23.65051 -23.08664 -21.58697 -21.14393 -20.15728 -19.19149 -18.34250 -17.85030 -17.43702 -16.27425 -16.00970 -15.74597 -15.31779 -15.22822 -14.93998 -14.68799 -14.34519 -14.27877 -14.02533 -13.82745 -13.65668 -13.42806 -13.21878 -12.99993 -12.81735 -12.57051 -12.40110 -12.21603 -11.97030 -11.91934 -11.77161 -11.58155 -11.49612 -11.37926 -11.05953 -11.00912 -10.61625 -10.56262 -10.40762 -10.40489 -10.37138 -10.21779 -10.17537 -9.72523 -9.46278 -9.20127 -8.40406 -7.96963 -7.78614 -6.41799 -3.82495 2.31201 2.94133 3.17213 3.25994 3.31938 3.50082 3.90662 4.00279 4.24225 4.30116 4.45232 4.51267 4.53137 4.61061 4.66627 4.81147 5.05603 5.06298 5.15702 5.24168 5.28756 5.32473 5.35956 5.45081 5.47140 5.48545 5.57076 5.58625 5.62177 5.69719 5.72762 5.74252 5.81240 5.84705 5.85751 5.89995 5.97617 6.04564 6.09135 6.19464 6.23986 6.29009 6.33084 6.46113 6.52066 7.31693 7.33916 7.46919 7.55154 8.06489 8.06778 8.62113 9.18301 9.54926 10.06828 10.75952 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018515 B = 0.002054 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.891431 B =13630.426477 C =14695.985029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.120 4.120 3 H 0.110 0.890 4 C -0.151 4.151 5 C -0.196 4.196 6 H 0.121 0.879 7 C 0.541 3.459 8 O -0.538 6.538 9 N -0.723 5.723 10 C 0.133 3.867 11 C -0.075 4.075 12 C -0.145 4.145 13 C -0.100 4.100 14 C 0.052 3.948 15 N -0.514 5.514 16 C 0.046 3.954 17 C 0.444 3.556 18 O -0.577 6.577 19 N -0.565 5.565 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.055 3.945 29 C -0.100 4.100 30 H 0.064 0.936 31 H 0.048 0.952 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.400 0.600 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.055 0.945 39 H 0.063 0.937 40 H 0.051 0.949 41 H 0.075 0.925 42 H 0.059 0.941 43 H 0.023 0.977 44 H 0.103 0.897 45 H 0.045 0.955 46 H 0.088 0.912 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.032 0.968 50 H 0.073 0.927 51 H 0.066 0.934 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.395 22.887 0.647 24.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.138 4.138 3 H 0.128 0.872 4 C -0.188 4.188 5 C -0.217 4.217 6 H 0.139 0.861 7 C 0.327 3.673 8 O -0.415 6.415 9 N -0.375 5.375 10 C 0.009 3.991 11 C -0.075 4.075 12 C -0.202 4.202 13 C -0.137 4.137 14 C -0.075 4.075 15 N -0.239 5.239 16 C -0.085 4.085 17 C 0.229 3.771 18 O -0.461 6.461 19 N -0.202 5.202 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.205 1.205 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.073 4.073 29 C -0.138 4.138 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.236 0.764 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.094 0.906 42 H 0.078 0.922 43 H 0.041 0.959 44 H 0.121 0.879 45 H 0.063 0.937 46 H 0.106 0.894 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.050 0.950 50 H 0.092 0.908 51 H 0.085 0.915 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.601 22.797 -0.439 24.370 hybrid contribution 1.755 -0.563 0.798 2.008 sum -6.846 22.234 0.358 23.267 Atomic orbital electron populations 1.21360 0.91451 1.01472 1.02538 1.22372 0.96637 0.93502 1.01336 0.87228 1.23105 1.03136 1.01858 0.90708 1.22308 1.02086 1.01321 0.95981 0.86085 1.19652 0.88110 0.81215 0.78282 1.90702 1.14552 1.74906 1.61331 1.46041 1.10653 1.27585 1.53177 1.21410 0.92792 0.88794 0.96078 1.20889 0.95985 0.94635 0.96015 1.21973 0.99567 1.00084 0.98581 1.21595 0.98118 0.96679 0.97354 1.22267 0.94258 0.92534 0.98449 1.61493 1.24539 1.09222 1.28613 1.21832 0.96864 0.93671 0.96124 1.19759 0.83745 0.83720 0.89832 1.90481 1.64292 1.70079 1.21255 1.41878 1.43790 1.24692 1.09827 1.19688 1.26006 1.07175 0.89857 0.87942 1.25256 0.97773 0.97647 0.97333 1.69613 1.39899 1.27352 1.17503 0.85866 0.79331 0.78441 0.80694 1.20468 1.20945 1.19419 1.22110 0.96032 0.96290 0.92902 1.21534 0.97349 0.95124 0.99837 0.91701 0.93333 0.91436 0.88123 0.87796 0.76409 0.91608 0.91264 0.92606 0.91802 0.92959 0.90615 0.92221 0.95897 0.87920 0.93680 0.89420 0.77525 0.91912 0.95018 0.90812 0.91511 0.90592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 8.43 37.16 0.31 -0.71 16 2 C -0.12 -0.93 6.40 -90.62 -0.58 -1.51 16 3 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 4 C -0.15 -1.10 9.88 -26.69 -0.26 -1.37 16 5 C -0.20 -1.56 6.19 -91.73 -0.57 -2.13 16 6 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 7 C 0.54 5.76 7.59 -10.98 -0.08 5.68 16 8 O -0.54 -7.42 13.10 5.56 0.07 -7.34 16 9 N -0.72 -6.67 4.98 -60.29 -0.30 -6.98 16 10 C 0.13 1.33 4.57 -4.04 -0.02 1.31 16 11 C -0.07 -0.74 0.53 -154.39 -0.08 -0.82 16 12 C -0.14 -1.28 7.73 37.16 0.29 -0.99 16 13 C -0.10 -1.22 4.68 -26.65 -0.12 -1.35 16 14 C 0.05 0.80 4.86 -3.83 -0.02 0.78 16 15 N -0.51 -8.22 4.40 -236.11 -1.04 -9.26 16 16 C 0.05 0.81 5.45 -4.98 -0.03 0.79 16 17 C 0.44 10.30 7.46 -10.99 -0.08 10.21 16 18 O -0.58 -15.21 13.90 5.55 0.08 -15.13 16 19 N -0.57 -14.16 5.29 -10.96 -0.06 -14.22 16 20 C -0.30 -8.22 9.68 -14.93 -0.14 -8.36 16 21 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 23 N -0.90 -24.41 13.05 55.50 0.72 -23.68 16 24 Si 0.93 20.95 29.55 -169.99 -5.02 15.93 16 25 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 28 C 0.05 0.67 5.21 -3.83 -0.02 0.65 16 29 C -0.10 -1.06 4.88 -26.65 -0.13 -1.19 16 30 H 0.06 0.70 7.01 -51.93 -0.36 0.34 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.71 7.26 -51.93 -0.38 0.34 16 33 H 0.10 0.84 8.05 -51.93 -0.42 0.42 16 34 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.40 3.03 6.20 -40.82 -0.25 2.78 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.63 4.93 -51.93 -0.26 0.37 16 40 H 0.05 0.41 6.86 -51.93 -0.36 0.05 16 41 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.06 0.64 6.96 -51.93 -0.36 0.28 16 43 H 0.02 0.32 6.52 -51.93 -0.34 -0.01 16 44 H 0.10 1.98 5.78 -51.93 -0.30 1.68 16 45 H 0.05 0.73 8.12 -51.93 -0.42 0.30 16 46 H 0.09 1.40 7.99 -51.93 -0.41 0.99 16 47 H 0.39 9.41 7.90 -40.82 -0.32 9.08 16 48 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 49 H 0.03 0.36 6.51 -51.93 -0.34 0.02 16 50 H 0.07 0.86 8.01 -51.93 -0.42 0.44 16 51 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 52 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 399.63 15.07 6.02 6.02 Total: -1.00 -31.86 399.63 -9.84 -41.70 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: -8.68 Total: 11.48 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: -1.64 Total: 1.47 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: -0.67 Total: -54.13 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: 0.15 Total: -22.48 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.86 -9.84 -41.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500411380.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.446 kcal (2) G-P(sol) polarization free energy of solvation -31.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds