Wall clock time and date at job start Tue Mar 31 2020 22:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 115.55222 * 2 1 4 4 C 1.52997 * 117.51971 * 145.69806 * 2 1 3 5 5 C 1.52999 * 60.00161 * 107.48020 * 4 2 1 6 6 H 1.09002 * 117.51940 * 107.47830 * 5 4 2 7 7 C 1.50698 * 117.50382 * 252.51143 * 5 4 2 8 8 O 1.21285 * 119.99770 * 68.62115 * 7 5 4 9 9 N 1.34774 * 120.00215 * 248.62278 * 7 5 4 10 10 C 1.46496 * 120.00153 * 180.02562 * 9 7 5 11 11 C 1.53001 * 109.47421 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.52365 * 59.87016 * 11 10 9 13 13 C 1.53117 * 109.51719 * 299.67997 * 11 10 9 14 14 C 1.53045 * 109.27457 * 182.44130 * 13 11 10 15 15 N 1.46837 * 109.52445 * 59.17896 * 14 13 11 16 16 C 1.46903 * 110.99904 * 174.15953 * 15 14 13 17 17 C 1.50703 * 109.47049 * 190.59814 * 16 15 14 18 18 O 1.21297 * 119.99867 * 6.27523 * 17 16 15 19 19 N 1.34780 * 120.00035 * 186.26576 * 17 16 15 20 20 C 1.37092 * 120.00057 * 180.02562 * 19 17 16 21 21 H 1.08006 * 119.99884 * 0.02562 * 20 19 17 22 22 C 1.38948 * 120.00128 * 180.02562 * 20 19 17 23 23 N 1.31410 * 120.00155 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00069 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47223 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47551 * 119.99960 * 24 22 20 27 27 H 1.48500 * 109.46928 * 239.99810 * 24 22 20 28 28 C 1.46847 * 111.19959 * 298.25711 * 15 14 13 29 29 C 1.53038 * 109.52291 * 61.74390 * 28 15 14 30 30 H 1.08994 * 109.47403 * 205.67286 * 1 2 3 31 31 H 1.09003 * 109.46900 * 325.67427 * 1 2 3 32 32 H 1.09000 * 109.47182 * 85.66884 * 1 2 3 33 33 H 1.09005 * 117.49614 * 359.97438 * 4 2 1 34 34 H 1.08997 * 117.50776 * 214.96833 * 4 2 1 35 35 H 0.96998 * 120.00016 * 359.97438 * 9 7 5 36 36 H 1.09011 * 109.47113 * 299.99901 * 10 9 7 37 37 H 1.09000 * 109.47578 * 59.99408 * 10 9 7 38 38 H 1.08996 * 109.47178 * 59.99946 * 12 11 10 39 39 H 1.08998 * 109.47358 * 180.02562 * 12 11 10 40 40 H 1.09005 * 109.46841 * 300.00379 * 12 11 10 41 41 H 1.08999 * 109.50895 * 302.37695 * 13 11 10 42 42 H 1.09001 * 109.50567 * 62.50391 * 13 11 10 43 43 H 1.09002 * 109.46027 * 299.15768 * 14 13 11 44 44 H 1.09001 * 109.45991 * 179.19636 * 14 13 11 45 45 H 1.08999 * 109.47415 * 310.59951 * 16 15 14 46 46 H 1.09000 * 109.46808 * 70.60756 * 16 15 14 47 47 H 0.96993 * 119.99874 * 0.02562 * 19 17 16 48 48 H 0.96996 * 120.00601 * 180.02562 * 23 22 20 49 49 H 1.08994 * 109.46392 * 301.72532 * 28 15 14 50 50 H 1.09007 * 109.45400 * 181.75335 * 28 15 14 51 51 H 1.09001 * 109.50271 * 180.87902 * 29 28 15 52 52 H 1.09003 * 109.53862 * 60.77699 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2369 -1.1209 0.7647 5 6 2.2364 -1.1208 -0.7653 6 1 3.1711 -0.8746 -1.2692 7 6 1.3720 -2.1405 -1.4611 8 8 0.1638 -2.0533 -1.4011 9 7 1.9415 -3.1492 -2.1499 10 6 1.1012 -4.1402 -2.8266 11 6 1.9902 -5.1689 -3.5283 12 6 2.8758 -5.8685 -2.4953 13 6 2.8696 -4.4632 -4.5642 14 6 3.7122 -5.5043 -5.3048 15 7 2.8273 -6.4720 -5.9654 16 6 3.5966 -7.4050 -6.7995 17 6 2.6526 -8.2077 -7.6572 18 8 1.4685 -7.9444 -7.6659 19 7 3.1239 -9.2181 -8.4145 20 6 2.2652 -9.9480 -9.1951 21 1 1.2110 -9.7131 -9.2034 22 6 2.7510 -10.9899 -9.9755 23 7 4.0337 -11.2754 -9.9658 24 14 1.5811 -11.9840 -11.0396 25 1 0.1994 -11.4658 -10.8736 26 1 1.9863 -11.8672 -12.4634 27 1 1.6273 -13.4099 -10.6273 28 6 2.0066 -7.1958 -4.9861 29 6 1.1130 -6.2053 -4.2361 30 1 -0.3634 -0.9261 0.4452 31 1 -0.3633 0.8487 0.5795 32 1 -0.3633 0.0776 -1.0247 33 1 1.6119 -1.8584 1.2683 34 1 3.1721 -0.8750 1.2677 35 1 2.9078 -3.2187 -2.1981 36 1 0.4718 -4.6445 -2.0933 37 1 0.4719 -3.6407 -3.5632 38 1 2.2482 -6.3725 -1.7604 39 1 3.5091 -6.6009 -2.9961 40 1 3.5015 -5.1303 -1.9936 41 1 2.2382 -3.9326 -5.2768 42 1 3.5270 -3.7542 -4.0611 43 1 4.3535 -6.0250 -4.5937 44 1 4.3291 -5.0066 -6.0530 45 1 4.2791 -6.8437 -7.4377 46 1 4.1677 -8.0780 -6.1599 47 1 4.0707 -9.4287 -8.4073 48 1 4.3730 -12.0024 -10.5108 49 1 2.6557 -7.7087 -4.2765 50 1 1.3845 -7.9266 -5.5031 51 1 0.5153 -6.7408 -3.4984 52 1 0.4534 -5.7019 -4.9429 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500411381.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:59 Heat of formation + Delta-G solvation = -52.475424 kcal Electronic energy + Delta-G solvation = -29574.271754 eV Core-core repulsion = 25574.064131 eV Total energy + Delta-G solvation = -4000.207623 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.61599 -39.70154 -38.09744 -36.96554 -35.55611 -33.92227 -33.27387 -31.22042 -30.77615 -29.21304 -28.57539 -27.35607 -26.12858 -24.45414 -23.71383 -23.05770 -21.61821 -21.19394 -20.20230 -19.16663 -18.35603 -17.84527 -17.47929 -16.31722 -15.97495 -15.75293 -15.51521 -15.10183 -14.97793 -14.61520 -14.37903 -14.31834 -14.10959 -13.82107 -13.65308 -13.36185 -13.28360 -13.02498 -12.85983 -12.62051 -12.35928 -12.26833 -11.99972 -11.89353 -11.82783 -11.60230 -11.49727 -11.35140 -11.06596 -11.01665 -10.65374 -10.62290 -10.44598 -10.35356 -10.34145 -10.22782 -10.20726 -9.75226 -9.46646 -9.23521 -8.40373 -7.95792 -7.80466 -6.41048 -3.81629 2.26990 2.90534 3.16652 3.27239 3.34503 3.44094 3.92393 3.98814 4.23788 4.25146 4.40529 4.45898 4.51078 4.55657 4.69355 4.77049 5.01728 5.04130 5.13578 5.24529 5.27738 5.28331 5.31184 5.41524 5.44769 5.48178 5.53971 5.56638 5.59108 5.68561 5.69524 5.75850 5.78670 5.81971 5.85145 5.87894 5.99118 6.01787 6.06760 6.17668 6.23692 6.29651 6.30681 6.45728 6.48309 7.27776 7.32491 7.45184 7.56171 8.03113 8.07926 8.63206 9.19481 9.56021 10.08067 10.76846 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.036899 B = 0.001806 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.639463 B =15496.423421 C =15819.733709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.119 4.119 3 H 0.110 0.890 4 C -0.152 4.152 5 C -0.195 4.195 6 H 0.121 0.879 7 C 0.540 3.460 8 O -0.536 6.536 9 N -0.723 5.723 10 C 0.132 3.868 11 C -0.074 4.074 12 C -0.145 4.145 13 C -0.102 4.102 14 C 0.054 3.946 15 N -0.513 5.513 16 C 0.047 3.953 17 C 0.444 3.556 18 O -0.575 6.575 19 N -0.566 5.566 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.057 3.943 29 C -0.099 4.099 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.068 0.932 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.399 0.601 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.056 0.944 39 H 0.063 0.937 40 H 0.050 0.950 41 H 0.075 0.925 42 H 0.060 0.940 43 H 0.032 0.968 44 H 0.072 0.928 45 H 0.088 0.912 46 H 0.045 0.955 47 H 0.391 0.609 48 H 0.270 0.730 49 H 0.025 0.975 50 H 0.098 0.902 51 H 0.066 0.934 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.151 17.955 20.181 27.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.137 4.137 3 H 0.128 0.872 4 C -0.189 4.189 5 C -0.217 4.217 6 H 0.139 0.861 7 C 0.326 3.674 8 O -0.413 6.413 9 N -0.375 5.375 10 C 0.008 3.992 11 C -0.074 4.074 12 C -0.202 4.202 13 C -0.140 4.140 14 C -0.074 4.074 15 N -0.238 5.238 16 C -0.085 4.085 17 C 0.229 3.771 18 O -0.459 6.459 19 N -0.203 5.203 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.071 4.071 29 C -0.137 4.137 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.234 0.766 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.069 0.931 41 H 0.094 0.906 42 H 0.079 0.921 43 H 0.050 0.950 44 H 0.091 0.909 45 H 0.106 0.894 46 H 0.063 0.937 47 H 0.224 0.776 48 H 0.080 0.920 49 H 0.043 0.957 50 H 0.116 0.884 51 H 0.084 0.916 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.242 18.286 19.792 26.975 hybrid contribution 1.435 -1.253 -0.228 1.919 sum 2.677 17.034 19.563 26.078 Atomic orbital electron populations 1.21363 0.91400 1.01424 1.02692 1.22370 0.96682 0.93506 1.01173 0.87185 1.23079 1.03081 1.02005 0.90776 1.22302 1.02156 1.01381 0.95813 0.86056 1.19655 0.88136 0.81201 0.78396 1.90716 1.14546 1.74739 1.61275 1.46046 1.10548 1.27697 1.53200 1.21435 0.92816 0.88893 0.96020 1.20881 0.96000 0.95312 0.95229 1.21975 0.99589 1.00400 0.98255 1.21613 0.98165 0.97074 0.97144 1.22117 0.94246 0.94172 0.96857 1.61480 1.23010 1.16991 1.22333 1.21843 0.95441 0.94868 0.96316 1.19771 0.89224 0.83446 0.84675 1.90510 1.16714 1.70104 1.68573 1.41889 1.10766 1.28520 1.39149 1.19746 0.92895 1.10421 1.19615 0.87874 1.25251 0.96467 0.97883 0.98398 1.69616 1.12484 1.31047 1.41276 0.85811 0.80278 0.79096 0.79231 1.19227 1.20777 1.20818 1.22176 0.96067 0.96076 0.92771 1.21534 0.97451 0.96167 0.98569 0.91762 0.93300 0.91307 0.88245 0.87881 0.76556 0.91483 0.91157 0.92450 0.91808 0.93063 0.90635 0.92122 0.95042 0.90933 0.89393 0.93742 0.77560 0.91977 0.95687 0.88429 0.91571 0.90460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 8.43 37.16 0.31 -0.67 16 2 C -0.12 -0.85 6.41 -90.62 -0.58 -1.43 16 3 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 4 C -0.15 -0.94 9.88 -26.73 -0.26 -1.20 16 5 C -0.20 -1.41 6.19 -91.77 -0.57 -1.97 16 6 H 0.12 0.63 8.14 -51.93 -0.42 0.20 16 7 C 0.54 5.43 7.59 -10.99 -0.08 5.34 16 8 O -0.54 -7.24 13.10 5.55 0.07 -7.17 16 9 N -0.72 -6.14 4.98 -60.29 -0.30 -6.44 16 10 C 0.13 1.31 4.57 -4.04 -0.02 1.29 16 11 C -0.07 -0.73 0.53 -154.39 -0.08 -0.81 16 12 C -0.15 -1.27 7.73 37.16 0.29 -0.98 16 13 C -0.10 -1.03 4.68 -26.65 -0.12 -1.15 16 14 C 0.05 0.65 5.21 -3.84 -0.02 0.63 16 15 N -0.51 -8.20 4.35 -236.11 -1.03 -9.23 16 16 C 0.05 0.82 5.45 -4.97 -0.03 0.79 16 17 C 0.44 10.34 7.31 -10.98 -0.08 10.26 16 18 O -0.58 -15.35 14.29 5.54 0.08 -15.27 16 19 N -0.57 -14.24 5.29 -10.96 -0.06 -14.30 16 20 C -0.30 -8.25 9.68 -14.94 -0.14 -8.39 16 21 H 0.10 3.01 7.16 -52.48 -0.38 2.64 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 23 N -0.90 -24.49 13.05 55.50 0.72 -23.77 16 24 Si 0.93 21.05 29.55 -169.99 -5.02 16.02 16 25 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 C 0.06 0.88 4.87 -3.83 -0.02 0.86 16 29 C -0.10 -1.25 4.88 -26.65 -0.13 -1.38 16 30 H 0.06 0.66 7.01 -51.93 -0.36 0.29 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.72 7.26 -51.93 -0.38 0.35 16 33 H 0.10 0.70 8.05 -51.93 -0.42 0.28 16 34 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.40 2.54 6.20 -40.82 -0.25 2.29 16 36 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.62 4.93 -51.93 -0.26 0.37 16 40 H 0.05 0.36 6.86 -51.93 -0.36 0.01 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.06 0.47 6.96 -51.93 -0.36 0.11 16 43 H 0.03 0.35 6.52 -51.93 -0.34 0.01 16 44 H 0.07 0.83 8.01 -51.93 -0.42 0.41 16 45 H 0.09 1.40 7.98 -51.93 -0.41 0.99 16 46 H 0.04 0.72 8.12 -51.93 -0.42 0.29 16 47 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 48 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 49 H 0.03 0.36 6.51 -51.93 -0.34 0.02 16 50 H 0.10 1.89 6.06 -51.93 -0.31 1.58 16 51 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 52 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 400.07 15.07 6.03 6.03 Total: -1.00 -32.23 400.07 -9.83 -42.06 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -8.69 Total: 10.42 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: -1.64 Total: 1.65 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: -0.66 Total: -53.74 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: 0.15 Total: -22.44 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.23 -9.83 -42.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500411381.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.420 kcal (2) G-P(sol) polarization free energy of solvation -32.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds