Wall clock time and date at job start Tue Mar 31 2020 22:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 115.55222 * 2 1 4 4 C 1.52997 * 117.51971 * 145.69806 * 2 1 3 5 5 C 1.52999 * 60.00161 * 107.48020 * 4 2 1 6 6 H 1.09002 * 117.51940 * 107.47830 * 5 4 2 7 7 C 1.50698 * 117.50382 * 252.51143 * 5 4 2 8 8 O 1.21285 * 119.99770 * 68.62115 * 7 5 4 9 9 N 1.34774 * 120.00215 * 248.62278 * 7 5 4 10 10 C 1.46496 * 120.00153 * 180.02562 * 9 7 5 11 11 C 1.53001 * 109.47421 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.52365 * 59.87016 * 11 10 9 13 13 C 1.53117 * 109.51719 * 299.67997 * 11 10 9 14 14 C 1.53045 * 109.27457 * 182.44130 * 13 11 10 15 15 N 1.46837 * 109.52445 * 59.17896 * 14 13 11 16 16 C 1.46903 * 110.99904 * 174.15953 * 15 14 13 17 17 C 1.50703 * 109.47049 * 190.59814 * 16 15 14 18 18 O 1.21297 * 119.99867 * 6.27523 * 17 16 15 19 19 N 1.34780 * 120.00035 * 186.26576 * 17 16 15 20 20 C 1.37092 * 120.00057 * 180.02562 * 19 17 16 21 21 H 1.08006 * 119.99884 * 0.02562 * 20 19 17 22 22 C 1.38948 * 120.00128 * 180.02562 * 20 19 17 23 23 N 1.31410 * 120.00155 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00069 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47223 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47551 * 119.99960 * 24 22 20 27 27 H 1.48500 * 109.46928 * 239.99810 * 24 22 20 28 28 C 1.46847 * 111.19959 * 298.25711 * 15 14 13 29 29 C 1.53038 * 109.52291 * 61.74390 * 28 15 14 30 30 H 1.08994 * 109.47403 * 205.67286 * 1 2 3 31 31 H 1.09003 * 109.46900 * 325.67427 * 1 2 3 32 32 H 1.09000 * 109.47182 * 85.66884 * 1 2 3 33 33 H 1.09005 * 117.49614 * 359.97438 * 4 2 1 34 34 H 1.08997 * 117.50776 * 214.96833 * 4 2 1 35 35 H 0.96998 * 120.00016 * 359.97438 * 9 7 5 36 36 H 1.09011 * 109.47113 * 299.99901 * 10 9 7 37 37 H 1.09000 * 109.47578 * 59.99408 * 10 9 7 38 38 H 1.08996 * 109.47178 * 59.99946 * 12 11 10 39 39 H 1.08998 * 109.47358 * 180.02562 * 12 11 10 40 40 H 1.09005 * 109.46841 * 300.00379 * 12 11 10 41 41 H 1.08999 * 109.50895 * 302.37695 * 13 11 10 42 42 H 1.09001 * 109.50567 * 62.50391 * 13 11 10 43 43 H 1.09002 * 109.46027 * 299.15768 * 14 13 11 44 44 H 1.09001 * 109.45991 * 179.19636 * 14 13 11 45 45 H 1.08999 * 109.47415 * 310.59951 * 16 15 14 46 46 H 1.09000 * 109.46808 * 70.60756 * 16 15 14 47 47 H 0.96993 * 119.99874 * 0.02562 * 19 17 16 48 48 H 0.96996 * 120.00601 * 180.02562 * 23 22 20 49 49 H 1.08994 * 109.46392 * 301.72532 * 28 15 14 50 50 H 1.09007 * 109.45400 * 181.75335 * 28 15 14 51 51 H 1.09001 * 109.50271 * 180.87902 * 29 28 15 52 52 H 1.09003 * 109.53862 * 60.77699 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2369 -1.1209 0.7647 5 6 2.2364 -1.1208 -0.7653 6 1 3.1711 -0.8746 -1.2692 7 6 1.3720 -2.1405 -1.4611 8 8 0.1638 -2.0533 -1.4011 9 7 1.9415 -3.1492 -2.1499 10 6 1.1012 -4.1402 -2.8266 11 6 1.9902 -5.1689 -3.5283 12 6 2.8758 -5.8685 -2.4953 13 6 2.8696 -4.4632 -4.5642 14 6 3.7122 -5.5043 -5.3048 15 7 2.8273 -6.4720 -5.9654 16 6 3.5966 -7.4050 -6.7995 17 6 2.6526 -8.2077 -7.6572 18 8 1.4685 -7.9444 -7.6659 19 7 3.1239 -9.2181 -8.4145 20 6 2.2652 -9.9480 -9.1951 21 1 1.2110 -9.7131 -9.2034 22 6 2.7510 -10.9899 -9.9755 23 7 4.0337 -11.2754 -9.9658 24 14 1.5811 -11.9840 -11.0396 25 1 0.1994 -11.4658 -10.8736 26 1 1.9863 -11.8672 -12.4634 27 1 1.6273 -13.4099 -10.6273 28 6 2.0066 -7.1958 -4.9861 29 6 1.1130 -6.2053 -4.2361 30 1 -0.3634 -0.9261 0.4452 31 1 -0.3633 0.8487 0.5795 32 1 -0.3633 0.0776 -1.0247 33 1 1.6119 -1.8584 1.2683 34 1 3.1721 -0.8750 1.2677 35 1 2.9078 -3.2187 -2.1981 36 1 0.4718 -4.6445 -2.0933 37 1 0.4719 -3.6407 -3.5632 38 1 2.2482 -6.3725 -1.7604 39 1 3.5091 -6.6009 -2.9961 40 1 3.5015 -5.1303 -1.9936 41 1 2.2382 -3.9326 -5.2768 42 1 3.5270 -3.7542 -4.0611 43 1 4.3535 -6.0250 -4.5937 44 1 4.3291 -5.0066 -6.0530 45 1 4.2791 -6.8437 -7.4377 46 1 4.1677 -8.0780 -6.1599 47 1 4.0707 -9.4287 -8.4073 48 1 4.3730 -12.0024 -10.5108 49 1 2.6557 -7.7087 -4.2765 50 1 1.3845 -7.9266 -5.5031 51 1 0.5153 -6.7408 -3.4984 52 1 0.4534 -5.7019 -4.9429 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500411381.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:55 Heat of formation + Delta-G solvation = -74.911246 kcal Electronic energy + Delta-G solvation = -29575.244644 eV Core-core repulsion = 25574.064131 eV Total energy + Delta-G solvation = -4001.180513 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.46226 -40.74420 -39.72652 -37.71788 -36.64441 -35.83865 -34.30245 -33.24130 -31.80338 -30.22895 -29.44083 -28.12836 -27.56005 -25.91717 -24.71915 -24.02545 -22.53868 -21.91136 -20.99760 -20.91741 -19.87068 -19.27242 -18.15862 -17.71954 -17.07546 -16.66591 -16.49120 -16.45653 -16.28092 -15.98928 -15.55314 -15.48107 -15.28384 -15.05290 -14.90662 -14.40009 -14.20068 -14.03580 -13.85558 -13.54742 -13.48801 -13.36454 -13.13741 -13.06097 -12.92733 -12.84365 -12.52913 -12.48168 -12.39499 -12.35212 -12.12629 -12.05177 -11.59571 -11.53901 -11.31718 -11.18529 -11.15556 -11.01528 -10.53916 -10.24361 -10.03742 -9.98494 -9.07744 -8.46177 -5.94386 1.35957 1.41088 1.55045 1.55114 2.07617 2.19335 2.28680 2.80770 2.88962 3.20885 3.40119 3.61706 3.68753 3.71858 3.79626 3.88208 3.96261 4.21007 4.23246 4.26432 4.32274 4.34464 4.44031 4.50098 4.50507 4.56808 4.65206 4.68556 4.76723 4.78596 4.81545 4.85861 4.92444 4.97898 4.99159 5.04185 5.07837 5.12158 5.15192 5.19831 5.28360 5.32118 5.41623 5.45208 5.50061 5.58329 5.93389 6.14107 6.32913 6.60278 6.62475 7.14610 7.31524 7.58586 8.15128 8.71478 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.036899 B = 0.001806 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.639463 B =15496.423421 C =15819.733709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.129 4.129 3 H 0.133 0.867 4 C -0.138 4.138 5 C -0.197 4.197 6 H 0.151 0.849 7 C 0.532 3.468 8 O -0.579 6.579 9 N -0.710 5.710 10 C 0.141 3.859 11 C -0.060 4.060 12 C -0.141 4.141 13 C -0.098 4.098 14 C 0.053 3.947 15 N -0.536 5.536 16 C 0.059 3.941 17 C 0.440 3.560 18 O -0.615 6.615 19 N -0.576 5.576 20 C -0.331 4.331 21 H 0.077 0.923 22 C -0.013 4.013 23 N -0.921 5.921 24 Si 0.991 3.009 25 H -0.275 1.275 26 H -0.271 1.271 27 H -0.271 1.271 28 C 0.062 3.938 29 C -0.096 4.096 30 H 0.042 0.958 31 H 0.062 0.938 32 H 0.044 0.956 33 H 0.085 0.915 34 H 0.132 0.868 35 H 0.414 0.586 36 H 0.058 0.942 37 H 0.050 0.950 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.076 0.924 41 H 0.056 0.944 42 H 0.095 0.905 43 H 0.051 0.949 44 H 0.083 0.917 45 H 0.110 0.890 46 H 0.065 0.935 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.041 0.959 50 H 0.049 0.951 51 H 0.073 0.927 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.877 19.115 21.674 29.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.147 4.147 3 H 0.151 0.849 4 C -0.175 4.175 5 C -0.218 4.218 6 H 0.169 0.831 7 C 0.320 3.680 8 O -0.459 6.459 9 N -0.362 5.362 10 C 0.016 3.984 11 C -0.061 4.061 12 C -0.198 4.198 13 C -0.136 4.136 14 C -0.073 4.073 15 N -0.261 5.261 16 C -0.072 4.072 17 C 0.228 3.772 18 O -0.501 6.501 19 N -0.214 5.214 20 C -0.460 4.460 21 H 0.095 0.905 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.815 3.185 25 H -0.200 1.200 26 H -0.196 1.196 27 H -0.196 1.196 28 C -0.066 4.066 29 C -0.134 4.134 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.104 0.896 34 H 0.150 0.850 35 H 0.252 0.748 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.095 0.905 41 H 0.075 0.925 42 H 0.114 0.886 43 H 0.070 0.930 44 H 0.101 0.899 45 H 0.128 0.872 46 H 0.083 0.917 47 H 0.229 0.771 48 H 0.086 0.914 49 H 0.059 0.941 50 H 0.067 0.933 51 H 0.091 0.909 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.029 19.450 21.295 29.121 hybrid contribution 0.529 -1.582 -0.666 1.796 sum 4.558 17.869 20.629 27.670 Atomic orbital electron populations 1.21267 0.93320 1.00863 1.01136 1.22475 0.95356 0.94907 1.02005 0.84890 1.23151 1.03724 1.00707 0.89963 1.22379 1.02547 1.00378 0.96457 0.83127 1.20280 0.87988 0.81659 0.78096 1.90711 1.16631 1.75775 1.62780 1.45897 1.11077 1.26866 1.52382 1.21184 0.92821 0.88992 0.95361 1.20717 0.95577 0.94397 0.95393 1.21944 0.99392 1.00782 0.97695 1.21616 0.98188 0.97018 0.96748 1.22252 0.94101 0.93490 0.97504 1.61438 1.24237 1.17179 1.23275 1.21711 0.94148 0.95063 0.96282 1.20868 0.89646 0.82741 0.83960 1.90487 1.18992 1.70985 1.69589 1.41951 1.10630 1.29176 1.39639 1.19668 0.92371 1.12252 1.21744 0.90526 1.25998 0.98103 0.98196 0.98957 1.69670 1.13467 1.31423 1.41620 0.84895 0.77837 0.77852 0.77894 1.19996 1.19598 1.19600 1.22017 0.96021 0.95937 0.92592 1.21470 0.97312 0.96413 0.98210 0.93909 0.91909 0.93703 0.89596 0.85028 0.74845 0.92393 0.93172 0.92504 0.92300 0.90503 0.92513 0.88628 0.93049 0.89865 0.87207 0.91698 0.77067 0.91359 0.94120 0.93263 0.90865 0.92907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.91 8.43 71.98 0.61 -1.31 16 2 C -0.13 -1.56 6.41 -10.80 -0.07 -1.63 16 3 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 4 C -0.14 -1.31 9.88 30.59 0.30 -1.01 16 5 C -0.20 -2.28 6.19 -11.54 -0.07 -2.36 16 6 H 0.15 0.87 8.14 -2.39 -0.02 0.85 16 7 C 0.53 10.05 7.59 87.66 0.67 10.72 16 8 O -0.58 -16.02 13.10 -3.04 -0.04 -16.06 16 9 N -0.71 -10.59 4.98 -463.06 -2.31 -12.89 16 10 C 0.14 2.72 4.57 86.38 0.39 3.11 16 11 C -0.06 -1.10 0.53 -52.10 -0.03 -1.13 16 12 C -0.14 -2.05 7.73 71.98 0.56 -1.49 16 13 C -0.10 -1.74 4.68 30.65 0.14 -1.59 16 14 C 0.05 1.13 5.21 86.33 0.45 1.58 16 15 N -0.54 -16.76 4.35 -900.92 -3.92 -20.68 16 16 C 0.06 2.02 5.45 85.56 0.47 2.49 16 17 C 0.44 21.10 7.31 87.66 0.64 21.74 16 18 O -0.61 -34.42 14.29 -3.08 -0.04 -34.47 16 19 N -0.58 -29.74 5.29 -306.97 -1.62 -31.36 16 20 C -0.33 -18.96 9.68 84.04 0.81 -18.15 16 21 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 22 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 23 N -0.92 -49.79 13.05 21.66 0.28 -49.51 16 24 Si 0.99 43.39 29.55 68.60 2.03 45.42 16 25 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 26 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 27 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 28 C 0.06 1.95 4.87 86.33 0.42 2.37 16 29 C -0.10 -2.47 4.88 30.65 0.15 -2.32 16 30 H 0.04 0.91 7.01 -2.39 -0.02 0.90 16 31 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.04 0.99 7.26 -2.39 -0.02 0.97 16 33 H 0.09 1.07 8.05 -2.38 -0.02 1.05 16 34 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.41 3.68 6.20 -92.71 -0.57 3.10 16 36 H 0.06 1.24 8.14 -2.38 -0.02 1.23 16 37 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.06 0.95 4.93 -2.39 -0.01 0.94 16 40 H 0.08 0.74 6.86 -2.38 -0.02 0.73 16 41 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.10 1.06 6.96 -2.39 -0.02 1.05 16 43 H 0.05 0.92 6.52 -2.39 -0.02 0.91 16 44 H 0.08 1.61 8.01 -2.39 -0.02 1.59 16 45 H 0.11 3.29 7.98 -2.39 -0.02 3.27 16 46 H 0.07 1.97 8.12 -2.39 -0.02 1.95 16 47 H 0.40 19.33 7.90 -92.71 -0.73 18.60 16 48 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 49 H 0.04 1.13 6.51 -2.39 -0.02 1.11 16 50 H 0.05 2.02 6.06 -2.38 -0.01 2.01 16 51 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 52 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -74.41 400.07 -0.08 -74.49 By element: Atomic # 1 Polarization: 34.64 SS G_CDS: -0.37 Total: 34.27 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: 5.91 Total: 10.79 kcal Atomic # 7 Polarization: -106.88 SS G_CDS: -7.56 Total: -114.45 kcal Atomic # 8 Polarization: -50.44 SS G_CDS: -0.08 Total: -50.52 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -74.41 -0.08 -74.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500411381.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.420 kcal (2) G-P(sol) polarization free energy of solvation -74.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds