Wall clock time and date at job start Tue Mar 31 2020 20:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50697 * 109.47188 * 2 1 4 4 O 1.21284 * 119.99911 * 359.97438 * 3 2 1 5 5 N 1.34776 * 119.99944 * 180.02562 * 3 2 1 6 6 C 1.46505 * 119.99731 * 180.02562 * 5 3 2 7 7 H 1.08999 * 109.47234 * 324.99731 * 6 5 3 8 8 C 1.53000 * 109.47023 * 84.99951 * 6 5 3 9 9 C 1.50706 * 109.46741 * 204.99802 * 6 5 3 10 10 O 1.21281 * 119.99711 * 359.97438 * 9 6 5 11 11 N 1.34772 * 119.99539 * 180.02562 * 9 6 5 12 12 C 1.46511 * 119.99659 * 180.02562 * 11 9 6 13 13 C 1.52999 * 109.46880 * 179.97438 * 12 11 9 14 14 H 1.08995 * 109.43373 * 300.77502 * 13 12 11 15 15 C 1.53146 * 109.43298 * 60.69049 * 13 12 11 16 16 C 1.53699 * 108.87795 * 66.17506 * 15 13 12 17 17 H 1.08997 * 112.10202 * 187.62243 * 16 15 13 18 18 C 1.54609 * 107.83075 * 311.58938 * 16 15 13 19 19 C 1.55900 * 103.99470 * 88.88484 * 18 16 15 20 20 C 1.54607 * 104.89845 * 359.97438 * 19 18 16 21 21 H 1.09004 * 112.19247 * 146.81609 * 20 19 18 22 22 C 1.53146 * 109.43170 * 180.91022 * 13 12 11 23 23 N 1.48286 * 107.27793 * 64.00843 * 16 15 13 24 24 C 1.36942 * 128.21196 * 107.41731 * 23 16 15 25 25 H 1.07998 * 119.99709 * 34.91036 * 24 23 16 26 26 C 1.38809 * 119.99801 * 214.91045 * 24 23 16 27 27 N 1.31616 * 120.00243 * 5.00245 * 26 24 23 28 28 Si 1.86801 * 119.99555 * 185.00685 * 26 24 23 29 29 H 1.48502 * 109.47673 * 59.99773 * 28 26 24 30 30 H 1.48507 * 109.46988 * 180.02562 * 28 26 24 31 31 H 1.48506 * 109.46953 * 299.99641 * 28 26 24 32 32 H 1.09002 * 109.46991 * 300.00154 * 1 2 3 33 33 H 1.09007 * 109.46824 * 59.99500 * 1 2 3 34 34 H 1.08996 * 109.47337 * 179.97438 * 1 2 3 35 35 H 1.08999 * 109.46667 * 120.00283 * 2 1 3 36 36 H 1.09000 * 109.46704 * 240.00304 * 2 1 3 37 37 H 0.96997 * 120.00296 * 359.97438 * 5 3 2 38 38 H 1.08999 * 109.47295 * 59.99817 * 8 6 5 39 39 H 1.09004 * 109.47065 * 179.97438 * 8 6 5 40 40 H 1.08998 * 109.47122 * 299.99569 * 8 6 5 41 41 H 0.96992 * 120.00629 * 359.97438 * 11 9 6 42 42 H 1.08998 * 109.46668 * 300.00137 * 12 11 9 43 43 H 1.09001 * 109.47122 * 60.00022 * 12 11 9 44 44 H 1.08997 * 109.56519 * 185.98844 * 15 13 12 45 45 H 1.09001 * 109.56978 * 306.22602 * 15 13 12 46 46 H 1.09000 * 110.38370 * 207.48850 * 18 16 15 47 47 H 1.09001 * 110.38573 * 329.85679 * 18 16 15 48 48 H 1.08995 * 110.29816 * 241.11514 * 19 18 16 49 49 H 1.08997 * 110.32226 * 118.85117 * 19 18 16 50 50 H 1.08998 * 109.57126 * 53.64550 * 22 13 12 51 51 H 1.09001 * 109.57085 * 174.00662 * 22 13 12 52 52 H 0.97006 * 119.99871 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3426 -0.0005 5 7 3.3575 1.6670 -0.0005 6 6 3.8458 3.0483 0.0000 7 1 3.1730 3.6718 -0.5887 8 6 3.8979 3.5702 1.4373 9 6 5.2270 3.0930 -0.6011 10 8 5.7519 2.0715 -0.9910 11 7 5.8793 4.2678 -0.7043 12 6 7.2218 4.3113 -1.2892 13 6 7.7319 5.7538 -1.2885 14 1 7.0510 6.3795 -1.8655 15 6 7.8006 6.2692 0.1520 16 6 8.8754 5.4767 0.9129 17 1 8.8781 5.7078 1.9781 18 6 8.6357 3.9735 0.6423 19 6 9.4623 3.6862 -0.6479 20 6 10.1088 5.0416 -1.0159 21 1 11.0902 4.9188 -1.4740 22 6 9.1259 5.8016 -1.9207 23 7 10.1788 5.7744 0.2715 24 6 11.2042 6.5435 0.7536 25 1 11.4162 6.5585 1.8125 26 6 11.9709 7.3038 -0.1187 27 7 11.6522 7.3632 -1.3943 28 14 13.4552 8.2424 0.5180 29 1 14.4266 7.2890 1.1118 30 1 14.0990 8.9710 -0.6046 31 1 13.0196 9.2142 1.5530 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5140 -0.8900 34 1 -0.3634 -1.0276 -0.0005 35 1 1.8933 -0.5139 0.8900 36 1 1.8933 -0.5138 -0.8900 37 1 3.9878 0.9298 -0.0005 38 1 4.5708 2.9467 2.0261 39 1 4.2617 4.5977 1.4378 40 1 2.8989 3.5379 1.8721 41 1 5.4596 5.0846 -0.3921 42 1 7.8947 3.6873 -0.7011 43 1 7.1842 3.9402 -2.3134 44 1 8.0612 7.3276 0.1489 45 1 6.8331 6.1328 0.6351 46 1 9.0047 3.3743 1.4747 47 1 7.5756 3.7820 0.4761 48 1 8.8061 3.3484 -1.4500 49 1 10.2316 2.9409 -0.4464 50 1 9.0972 5.3322 -2.9040 51 1 9.4471 6.8387 -2.0186 52 1 12.1879 7.8948 -2.0038 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501166479.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:55 Heat of formation + Delta-G solvation = 30.123231 kcal Electronic energy + Delta-G solvation = -31139.026617 eV Core-core repulsion = 27142.400740 eV Total energy + Delta-G solvation = -3996.625877 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.36 seconds Orbital eigenvalues (eV) -41.30442 -40.22809 -38.90225 -35.23417 -34.78556 -33.20099 -32.84079 -31.52703 -30.82938 -30.48602 -29.61905 -26.70774 -25.41106 -24.07187 -23.35782 -23.01853 -20.70756 -20.59424 -20.39599 -19.42395 -18.78791 -17.99620 -17.08217 -16.90471 -16.16228 -16.01058 -15.71075 -15.05282 -14.97319 -14.58242 -14.20631 -14.02468 -13.71746 -13.40473 -13.04180 -12.85581 -12.75137 -12.67233 -12.60239 -12.42804 -12.05537 -12.02138 -11.81989 -11.71288 -11.51628 -11.46297 -11.41373 -11.22019 -10.89443 -10.78221 -10.54787 -10.19180 -10.11984 -9.99983 -9.79742 -9.68413 -9.46790 -9.41108 -9.33730 -9.19213 -8.55649 -8.21408 -6.57838 -5.86468 -3.33117 2.38119 2.58600 2.74270 3.34316 3.39718 3.40156 3.40813 4.41621 4.42607 4.61036 4.76294 4.77918 4.85678 4.93690 5.21662 5.21962 5.26833 5.35572 5.41207 5.48545 5.49600 5.55642 5.58095 5.62457 5.73005 5.79987 5.88380 5.89765 5.90890 6.07422 6.08803 6.13952 6.16837 6.28502 6.39320 6.40394 6.54940 6.62845 6.65091 6.72106 6.87600 6.96246 7.08840 7.15234 7.26851 7.42918 7.52577 7.67686 7.79711 7.98580 8.19819 8.28562 9.08173 9.67896 10.59309 11.26135 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.034741 B = 0.002360 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.772683 B =11863.157625 C =11972.590408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.144 4.144 3 C 0.514 3.486 4 O -0.544 6.544 5 N -0.713 5.713 6 C 0.122 3.878 7 H 0.111 0.889 8 C -0.159 4.159 9 C 0.504 3.496 10 O -0.543 6.543 11 N -0.712 5.712 12 C 0.003 3.997 13 C -0.084 4.084 14 H 0.050 0.950 15 C -0.121 4.121 16 C 0.149 3.851 17 H 0.063 0.937 18 C -0.161 4.161 19 C -0.170 4.170 20 C 0.186 3.814 21 H 0.080 0.920 22 C -0.114 4.114 23 N -0.578 5.578 24 C -0.236 4.236 25 H 0.064 0.936 26 C 0.012 3.988 27 N -0.897 5.897 28 Si 0.906 3.094 29 H -0.283 1.283 30 H -0.290 1.290 31 H -0.283 1.283 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.411 0.589 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.396 0.604 42 H 0.194 0.806 43 H 0.050 0.950 44 H 0.064 0.936 45 H 0.038 0.962 46 H 0.051 0.949 47 H 0.093 0.907 48 H 0.087 0.913 49 H 0.053 0.947 50 H 0.035 0.965 51 H 0.099 0.901 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.799 -11.202 2.396 20.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.184 4.184 3 C 0.301 3.699 4 O -0.421 6.421 5 N -0.367 5.367 6 C 0.014 3.986 7 H 0.128 0.872 8 C -0.218 4.218 9 C 0.289 3.711 10 O -0.421 6.421 11 N -0.363 5.363 12 C -0.116 4.116 13 C -0.103 4.103 14 H 0.069 0.931 15 C -0.161 4.161 16 C 0.041 3.959 17 H 0.081 0.919 18 C -0.199 4.199 19 C -0.209 4.209 20 C 0.079 3.921 21 H 0.098 0.902 22 C -0.154 4.154 23 N -0.299 5.299 24 C -0.365 4.365 25 H 0.082 0.918 26 C -0.188 4.188 27 N -0.540 5.540 28 Si 0.735 3.265 29 H -0.210 1.210 30 H -0.216 1.216 31 H -0.209 1.209 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.247 0.753 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.230 0.770 42 H 0.209 0.791 43 H 0.068 0.932 44 H 0.083 0.917 45 H 0.056 0.944 46 H 0.069 0.931 47 H 0.110 0.890 48 H 0.105 0.895 49 H 0.072 0.928 50 H 0.054 0.946 51 H 0.117 0.883 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -16.745 -11.063 2.007 20.170 hybrid contribution 0.816 0.843 0.139 1.181 sum -15.929 -10.220 2.146 19.047 Atomic orbital electron populations 1.21530 0.92937 1.01596 1.03359 1.21626 0.98626 0.93512 1.04616 1.20823 0.81712 0.92081 0.75303 1.90700 1.55286 1.46525 1.49602 1.45822 1.07499 1.08049 1.75317 1.20787 0.93888 0.85440 0.98518 0.87151 1.22132 1.03508 1.01789 0.94378 1.20454 0.87098 0.84267 0.79283 1.90682 1.68387 1.33482 1.49562 1.46345 1.19129 1.08893 1.61963 1.25330 0.83292 1.02313 1.00628 1.21261 0.98433 0.93386 0.97256 0.93138 1.22161 0.97635 1.01203 0.95112 1.21533 0.87455 0.91245 0.95655 0.91883 1.23625 1.00054 0.99054 0.97148 1.23771 0.99053 1.00852 0.97193 1.21185 0.96347 0.86552 0.87978 0.90217 1.22133 0.92316 1.04731 0.96204 1.44933 1.11741 1.55123 1.18142 1.18755 1.06743 1.18497 0.92552 0.91821 1.25285 1.00134 0.97156 0.96182 1.69860 1.39308 1.42367 1.02446 0.86337 0.82530 0.79864 0.77729 1.20967 1.21615 1.20883 0.91976 0.91988 0.92052 0.88771 0.88721 0.75258 0.91555 0.90769 0.90970 0.76965 0.79052 0.93213 0.91700 0.94361 0.93066 0.88955 0.89493 0.92783 0.94595 0.88253 0.93541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 9.20 37.16 0.34 -0.62 16 2 C -0.14 -0.97 6.42 -27.88 -0.18 -1.15 16 3 C 0.51 5.30 7.79 -10.99 -0.09 5.21 16 4 O -0.54 -7.44 15.64 5.55 0.09 -7.35 16 5 N -0.71 -7.10 4.95 -54.93 -0.27 -7.37 16 6 C 0.12 1.29 2.99 -69.08 -0.21 1.09 16 7 H 0.11 1.21 7.58 -51.93 -0.39 0.82 16 8 C -0.16 -1.45 9.38 37.16 0.35 -1.10 16 9 C 0.50 6.46 6.99 -10.98 -0.08 6.39 16 10 O -0.54 -8.55 15.84 5.56 0.09 -8.46 16 11 N -0.71 -8.91 4.28 -60.29 -0.26 -9.17 16 12 C 0.00 0.04 2.66 -4.04 -0.01 0.03 16 13 C -0.08 -1.42 2.75 -90.47 -0.25 -1.67 16 14 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 15 C -0.12 -2.10 5.27 -26.29 -0.14 -2.24 16 16 C 0.15 2.88 4.28 -65.74 -0.28 2.60 16 17 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 18 C -0.16 -2.74 5.79 -24.34 -0.14 -2.88 16 19 C -0.17 -3.10 5.75 -24.34 -0.14 -3.24 16 20 C 0.19 4.06 3.12 -65.73 -0.20 3.85 16 21 H 0.08 1.98 7.66 -51.93 -0.40 1.58 16 22 C -0.11 -2.31 5.18 -26.29 -0.14 -2.45 16 23 N -0.58 -13.59 2.73 -152.76 -0.42 -14.01 16 24 C -0.24 -6.23 10.28 -15.06 -0.15 -6.38 16 25 H 0.06 1.67 7.83 -52.49 -0.41 1.25 16 26 C 0.01 0.33 5.43 -17.43 -0.09 0.23 16 27 N -0.90 -24.39 10.38 55.49 0.58 -23.81 16 28 Si 0.91 21.02 29.56 -169.99 -5.02 16.00 16 29 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 30 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 31 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 32 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 33 H 0.06 0.50 8.10 -51.92 -0.42 0.08 16 34 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.41 3.77 7.79 -40.82 -0.32 3.45 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.59 7.56 -51.93 -0.39 0.20 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.40 4.20 6.78 -40.82 -0.28 3.92 16 42 H 0.19 3.10 1.13 -164.44 -0.19 2.91 16 43 H 0.05 0.80 7.98 -51.93 -0.41 0.39 16 44 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 45 H 0.04 0.54 6.76 -51.93 -0.35 0.19 16 46 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.09 1.43 4.04 -51.93 -0.21 1.22 16 48 H 0.09 1.48 4.83 -51.93 -0.25 1.23 16 49 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 50 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 51 H 0.10 2.38 6.67 -51.93 -0.35 2.03 16 52 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 388.68 15.07 5.86 5.86 Total: -1.00 -30.42 388.68 -9.35 -39.76 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: -8.57 Total: 10.86 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -1.41 Total: -2.31 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: -0.37 Total: -54.36 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: 0.17 Total: -15.81 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.42 -9.35 -39.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501166479.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.885 kcal (2) G-P(sol) polarization free energy of solvation -30.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.36 seconds