Wall clock time and date at job start Tue Mar 31 2020 20:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50697 * 109.47188 * 2 1 4 4 O 1.21284 * 119.99911 * 359.97438 * 3 2 1 5 5 N 1.34776 * 119.99944 * 180.02562 * 3 2 1 6 6 C 1.46505 * 119.99731 * 180.02562 * 5 3 2 7 7 H 1.08999 * 109.47234 * 324.99731 * 6 5 3 8 8 C 1.53000 * 109.47023 * 84.99951 * 6 5 3 9 9 C 1.50706 * 109.46741 * 204.99802 * 6 5 3 10 10 O 1.21281 * 119.99711 * 359.97438 * 9 6 5 11 11 N 1.34772 * 119.99539 * 180.02562 * 9 6 5 12 12 C 1.46511 * 119.99659 * 180.02562 * 11 9 6 13 13 C 1.52999 * 109.46880 * 179.97438 * 12 11 9 14 14 H 1.08995 * 109.43373 * 300.77502 * 13 12 11 15 15 C 1.53146 * 109.43298 * 60.69049 * 13 12 11 16 16 C 1.53699 * 108.87795 * 66.17506 * 15 13 12 17 17 H 1.08997 * 112.10202 * 187.62243 * 16 15 13 18 18 C 1.54609 * 107.83075 * 311.58938 * 16 15 13 19 19 C 1.55900 * 103.99470 * 88.88484 * 18 16 15 20 20 C 1.54607 * 104.89845 * 359.97438 * 19 18 16 21 21 H 1.09004 * 112.19247 * 146.81609 * 20 19 18 22 22 C 1.53146 * 109.43170 * 180.91022 * 13 12 11 23 23 N 1.48286 * 107.27793 * 64.00843 * 16 15 13 24 24 C 1.36942 * 128.21196 * 107.41731 * 23 16 15 25 25 H 1.07998 * 119.99709 * 34.91036 * 24 23 16 26 26 C 1.38809 * 119.99801 * 214.91045 * 24 23 16 27 27 N 1.31616 * 120.00243 * 5.00245 * 26 24 23 28 28 Si 1.86801 * 119.99555 * 185.00685 * 26 24 23 29 29 H 1.48502 * 109.47673 * 59.99773 * 28 26 24 30 30 H 1.48507 * 109.46988 * 180.02562 * 28 26 24 31 31 H 1.48506 * 109.46953 * 299.99641 * 28 26 24 32 32 H 1.09002 * 109.46991 * 300.00154 * 1 2 3 33 33 H 1.09007 * 109.46824 * 59.99500 * 1 2 3 34 34 H 1.08996 * 109.47337 * 179.97438 * 1 2 3 35 35 H 1.08999 * 109.46667 * 120.00283 * 2 1 3 36 36 H 1.09000 * 109.46704 * 240.00304 * 2 1 3 37 37 H 0.96997 * 120.00296 * 359.97438 * 5 3 2 38 38 H 1.08999 * 109.47295 * 59.99817 * 8 6 5 39 39 H 1.09004 * 109.47065 * 179.97438 * 8 6 5 40 40 H 1.08998 * 109.47122 * 299.99569 * 8 6 5 41 41 H 0.96992 * 120.00629 * 359.97438 * 11 9 6 42 42 H 1.08998 * 109.46668 * 300.00137 * 12 11 9 43 43 H 1.09001 * 109.47122 * 60.00022 * 12 11 9 44 44 H 1.08997 * 109.56519 * 185.98844 * 15 13 12 45 45 H 1.09001 * 109.56978 * 306.22602 * 15 13 12 46 46 H 1.09000 * 110.38370 * 207.48850 * 18 16 15 47 47 H 1.09001 * 110.38573 * 329.85679 * 18 16 15 48 48 H 1.08995 * 110.29816 * 241.11514 * 19 18 16 49 49 H 1.08997 * 110.32226 * 118.85117 * 19 18 16 50 50 H 1.08998 * 109.57126 * 53.64550 * 22 13 12 51 51 H 1.09001 * 109.57085 * 174.00662 * 22 13 12 52 52 H 0.97006 * 119.99871 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3426 -0.0005 5 7 3.3575 1.6670 -0.0005 6 6 3.8458 3.0483 0.0000 7 1 3.1730 3.6718 -0.5887 8 6 3.8979 3.5702 1.4373 9 6 5.2270 3.0930 -0.6011 10 8 5.7519 2.0715 -0.9910 11 7 5.8793 4.2678 -0.7043 12 6 7.2218 4.3113 -1.2892 13 6 7.7319 5.7538 -1.2885 14 1 7.0510 6.3795 -1.8655 15 6 7.8006 6.2692 0.1520 16 6 8.8754 5.4767 0.9129 17 1 8.8781 5.7078 1.9781 18 6 8.6357 3.9735 0.6423 19 6 9.4623 3.6862 -0.6479 20 6 10.1088 5.0416 -1.0159 21 1 11.0902 4.9188 -1.4740 22 6 9.1259 5.8016 -1.9207 23 7 10.1788 5.7744 0.2715 24 6 11.2042 6.5435 0.7536 25 1 11.4162 6.5585 1.8125 26 6 11.9709 7.3038 -0.1187 27 7 11.6522 7.3632 -1.3943 28 14 13.4552 8.2424 0.5180 29 1 14.4266 7.2890 1.1118 30 1 14.0990 8.9710 -0.6046 31 1 13.0196 9.2142 1.5530 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5140 -0.8900 34 1 -0.3634 -1.0276 -0.0005 35 1 1.8933 -0.5139 0.8900 36 1 1.8933 -0.5138 -0.8900 37 1 3.9878 0.9298 -0.0005 38 1 4.5708 2.9467 2.0261 39 1 4.2617 4.5977 1.4378 40 1 2.8989 3.5379 1.8721 41 1 5.4596 5.0846 -0.3921 42 1 7.8947 3.6873 -0.7011 43 1 7.1842 3.9402 -2.3134 44 1 8.0612 7.3276 0.1489 45 1 6.8331 6.1328 0.6351 46 1 9.0047 3.3743 1.4747 47 1 7.5756 3.7820 0.4761 48 1 8.8061 3.3484 -1.4500 49 1 10.2316 2.9409 -0.4464 50 1 9.0972 5.3322 -2.9040 51 1 9.4471 6.8387 -2.0186 52 1 12.1879 7.8948 -2.0038 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501166479.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:54 Heat of formation + Delta-G solvation = 10.584490 kcal Electronic energy + Delta-G solvation = -31139.873880 eV Core-core repulsion = 27142.400740 eV Total energy + Delta-G solvation = -3997.473140 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.60 seconds Orbital eigenvalues (eV) -42.68122 -41.16924 -39.94703 -36.30798 -35.96190 -34.57807 -33.77944 -32.96893 -32.25311 -31.72506 -31.07410 -28.22847 -26.20528 -25.45190 -24.83312 -24.17500 -22.15876 -21.64258 -21.25870 -20.89070 -20.36313 -18.95834 -18.62198 -17.92225 -17.31388 -17.08149 -16.71565 -16.47900 -16.08959 -15.99302 -15.53784 -15.01955 -14.62080 -14.54947 -14.41082 -14.37197 -14.13434 -13.70357 -13.57757 -13.39614 -13.27616 -13.10782 -13.07257 -13.04128 -12.78938 -12.68770 -12.60209 -12.59279 -12.44987 -12.26483 -11.99410 -11.97484 -11.54856 -11.26010 -11.01073 -10.97232 -10.91759 -10.79193 -10.70669 -10.47414 -10.18058 -9.48831 -8.45262 -7.86262 -5.33845 1.47298 1.47858 1.54141 1.54245 1.64401 1.89861 2.48225 2.50470 3.31109 3.60490 3.64901 3.84139 3.95915 3.99191 4.05622 4.08742 4.14003 4.25842 4.26677 4.31334 4.32862 4.42275 4.59143 4.62162 4.67448 4.75858 4.76557 4.81799 4.84980 4.93759 5.03145 5.03306 5.06084 5.09690 5.12058 5.20021 5.22947 5.31037 5.33639 5.42835 5.43519 5.50131 5.56951 5.59945 5.65601 5.75628 6.01022 6.38414 6.51891 6.54511 7.12706 7.18289 7.23668 7.74492 8.67010 9.24239 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.034741 B = 0.002360 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.772683 B =11863.157625 C =11972.590408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.139 4.139 3 C 0.510 3.490 4 O -0.582 6.582 5 N -0.710 5.710 6 C 0.127 3.873 7 H 0.108 0.892 8 C -0.155 4.155 9 C 0.510 3.490 10 O -0.570 6.570 11 N -0.705 5.705 12 C 0.016 3.984 13 C -0.074 4.074 14 H 0.064 0.936 15 C -0.113 4.113 16 C 0.140 3.860 17 H 0.062 0.938 18 C -0.146 4.146 19 C -0.161 4.161 20 C 0.181 3.819 21 H 0.036 0.964 22 C -0.109 4.109 23 N -0.601 5.601 24 C -0.248 4.248 25 H 0.060 0.940 26 C -0.038 4.038 27 N -0.918 5.918 28 Si 0.965 3.035 29 H -0.281 1.281 30 H -0.295 1.295 31 H -0.277 1.277 32 H 0.049 0.951 33 H 0.045 0.955 34 H 0.084 0.916 35 H 0.118 0.882 36 H 0.112 0.888 37 H 0.416 0.584 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.067 0.933 41 H 0.409 0.591 42 H 0.187 0.813 43 H 0.046 0.954 44 H 0.034 0.966 45 H 0.081 0.919 46 H 0.057 0.943 47 H 0.117 0.883 48 H 0.105 0.895 49 H 0.052 0.948 50 H 0.043 0.957 51 H 0.058 0.942 52 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.671 -12.678 3.429 22.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.179 4.179 3 C 0.298 3.702 4 O -0.462 6.462 5 N -0.364 5.364 6 C 0.018 3.982 7 H 0.126 0.874 8 C -0.213 4.213 9 C 0.295 3.705 10 O -0.449 6.449 11 N -0.357 5.357 12 C -0.103 4.103 13 C -0.093 4.093 14 H 0.083 0.917 15 C -0.153 4.153 16 C 0.034 3.966 17 H 0.081 0.919 18 C -0.184 4.184 19 C -0.200 4.200 20 C 0.074 3.926 21 H 0.054 0.946 22 C -0.149 4.149 23 N -0.323 5.323 24 C -0.378 4.378 25 H 0.078 0.922 26 C -0.235 4.235 27 N -0.562 5.562 28 Si 0.793 3.207 29 H -0.207 1.207 30 H -0.221 1.221 31 H -0.203 1.203 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.102 0.898 35 H 0.136 0.864 36 H 0.130 0.870 37 H 0.254 0.746 38 H 0.088 0.912 39 H 0.107 0.893 40 H 0.086 0.914 41 H 0.245 0.755 42 H 0.202 0.798 43 H 0.064 0.936 44 H 0.053 0.947 45 H 0.099 0.901 46 H 0.075 0.925 47 H 0.134 0.866 48 H 0.123 0.877 49 H 0.071 0.929 50 H 0.061 0.939 51 H 0.077 0.923 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -18.636 -12.551 3.066 22.676 hybrid contribution 1.391 1.270 -0.185 1.893 sum -17.245 -11.281 2.881 20.807 Atomic orbital electron populations 1.21535 0.93278 1.02630 1.01957 1.21700 0.98235 0.91362 1.06566 1.21472 0.81339 0.93165 0.74185 1.90684 1.56121 1.47979 1.51457 1.45866 1.07645 1.07989 1.74904 1.20751 0.92142 0.86037 0.99274 0.87397 1.22113 1.03463 1.02672 0.93067 1.20758 0.87563 0.83625 0.78518 1.90681 1.69174 1.34446 1.50645 1.46145 1.18148 1.09651 1.61742 1.24899 0.84496 1.00412 1.00520 1.21105 0.96435 0.94958 0.96803 0.91726 1.22045 0.98909 0.98904 0.95422 1.21759 0.86142 0.93092 0.95645 0.91934 1.23549 1.01217 0.97107 0.96497 1.23713 0.99361 0.98425 0.98454 1.21131 0.95045 0.88741 0.87642 0.94551 1.21941 0.94216 1.01970 0.96779 1.45130 1.13048 1.55266 1.18889 1.19001 1.07787 1.18498 0.92514 0.92227 1.25942 1.02696 0.98401 0.96501 1.70036 1.40019 1.43045 1.03131 0.85406 0.79708 0.78627 0.76945 1.20737 1.22145 1.20324 0.93208 0.93599 0.89754 0.86368 0.86981 0.74635 0.91232 0.89268 0.91378 0.75461 0.79823 0.93623 0.94716 0.90110 0.92461 0.86573 0.87713 0.92945 0.93851 0.92321 0.94334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.20 71.98 0.66 -1.01 16 2 C -0.14 -1.52 6.42 29.85 0.19 -1.33 16 3 C 0.51 9.54 7.79 87.66 0.68 10.22 16 4 O -0.58 -15.30 15.64 -3.04 -0.05 -15.35 16 5 N -0.71 -12.44 4.95 -446.08 -2.21 -14.65 16 6 C 0.13 2.34 2.99 44.25 0.13 2.47 16 7 H 0.11 2.11 7.58 -2.39 -0.02 2.10 16 8 C -0.15 -2.33 9.38 71.98 0.68 -1.65 16 9 C 0.51 11.46 6.99 87.66 0.61 12.07 16 10 O -0.57 -16.28 15.84 -3.03 -0.05 -16.33 16 11 N -0.71 -15.14 4.28 -463.04 -1.98 -17.12 16 12 C 0.02 0.45 2.66 86.38 0.23 0.68 16 13 C -0.07 -2.36 2.75 -10.70 -0.03 -2.39 16 14 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 15 C -0.11 -3.72 5.27 30.88 0.16 -3.55 16 16 C 0.14 5.25 4.28 45.43 0.19 5.45 16 17 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 18 C -0.15 -4.62 5.79 32.15 0.19 -4.43 16 19 C -0.16 -5.70 5.75 32.15 0.18 -5.51 16 20 C 0.18 8.05 3.12 45.43 0.14 8.20 16 21 H 0.04 1.90 7.66 -2.38 -0.02 1.88 16 22 C -0.11 -4.48 5.18 30.88 0.16 -4.32 16 23 N -0.60 -28.69 2.73 -637.22 -1.74 -30.43 16 24 C -0.25 -13.37 10.28 84.03 0.86 -12.51 16 25 H 0.06 3.18 7.83 -2.91 -0.02 3.15 16 26 C -0.04 -2.09 5.43 84.86 0.46 -1.62 16 27 N -0.92 -52.01 10.38 21.65 0.22 -51.79 16 28 Si 0.96 44.29 29.56 68.60 2.03 46.32 16 29 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 30 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 31 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 32 H 0.05 0.73 8.10 -2.39 -0.02 0.71 16 33 H 0.04 0.70 8.10 -2.38 -0.02 0.68 16 34 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.42 6.51 7.79 -92.71 -0.72 5.79 16 38 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.09 1.06 7.56 -2.38 -0.02 1.05 16 40 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.41 6.95 6.78 -92.71 -0.63 6.32 16 42 H 0.19 5.43 1.13 -108.07 -0.12 5.31 16 43 H 0.05 1.35 7.98 -2.39 -0.02 1.33 16 44 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.08 1.96 6.76 -2.39 -0.02 1.95 16 46 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 47 H 0.12 3.15 4.04 -2.39 -0.01 3.14 16 48 H 0.11 3.36 4.83 -2.39 -0.01 3.35 16 49 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 50 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 51 H 0.06 2.91 6.67 -2.39 -0.02 2.89 16 52 H 0.25 13.81 8.31 -92.70 -0.77 13.04 16 Total: -1.00 -68.65 388.68 1.21 -67.43 By element: Atomic # 1 Polarization: 31.68 SS G_CDS: -0.52 Total: 31.15 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: 5.51 Total: 0.75 kcal Atomic # 7 Polarization: -108.28 SS G_CDS: -5.70 Total: -113.98 kcal Atomic # 8 Polarization: -31.58 SS G_CDS: -0.10 Total: -31.68 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -68.65 1.21 -67.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501166479.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.019 kcal (2) G-P(sol) polarization free energy of solvation -68.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.60 seconds