Wall clock time and date at job start Tue Mar 31 2020 21:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08991 * 109.49803 * 2 1 4 4 C 1.53042 * 109.49549 * 239.90391 * 2 1 3 5 5 C 1.53047 * 109.53844 * 178.68320 * 4 2 1 6 6 C 1.52761 * 109.37799 * 61.24001 * 5 4 2 7 7 N 1.46921 * 109.01032 * 305.58734 * 6 5 4 8 8 C 1.34779 * 120.63292 * 233.58823 * 7 6 5 9 9 O 1.21352 * 119.99995 * 7.40428 * 8 7 6 10 10 C 1.49450 * 120.00071 * 187.41342 * 8 7 6 11 11 O 1.21344 * 120.00224 * 7.68286 * 10 8 7 12 12 N 1.34775 * 119.99711 * 187.69033 * 10 8 7 13 13 C 1.46923 * 120.63333 * 5.43266 * 12 10 8 14 14 C 1.53189 * 108.77746 * 126.37147 * 13 12 10 15 15 C 1.53044 * 109.31380 * 54.63654 * 14 13 12 16 16 C 1.53039 * 109.53710 * 298.63818 * 15 14 13 17 17 C 1.46925 * 120.62854 * 185.41412 * 12 10 8 18 18 H 1.09003 * 109.70475 * 113.77342 * 17 12 10 19 19 C 1.52998 * 109.59060 * 353.41411 * 17 12 10 20 20 N 1.46503 * 109.46876 * 71.92045 * 19 17 12 21 21 C 1.36939 * 120.00056 * 175.07977 * 20 19 17 22 22 H 1.08006 * 119.99703 * 0.02562 * 21 20 19 23 23 C 1.38806 * 120.00308 * 179.97438 * 21 20 19 24 24 N 1.31624 * 119.99778 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00289 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47278 * 180.02562 * 25 23 21 27 27 H 1.48498 * 109.47325 * 300.00180 * 25 23 21 28 28 H 1.48504 * 109.47074 * 60.00086 * 25 23 21 29 29 C 1.46928 * 118.73835 * 53.31632 * 7 6 5 30 30 H 1.08999 * 109.46768 * 299.93100 * 1 2 3 31 31 H 1.08997 * 109.47144 * 59.93220 * 1 2 3 32 32 H 1.08998 * 109.47147 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46446 * 298.70662 * 4 2 1 34 34 H 1.09003 * 109.45953 * 58.66192 * 4 2 1 35 35 H 1.08995 * 109.49560 * 181.31803 * 5 4 2 36 36 H 1.09004 * 109.49310 * 301.38551 * 5 4 2 37 37 H 1.08999 * 109.50795 * 185.70720 * 6 5 4 38 38 H 1.08993 * 109.43260 * 65.42781 * 6 5 4 39 39 H 1.09003 * 109.58959 * 6.58514 * 13 12 10 40 40 H 1.09009 * 109.58786 * 246.16061 * 13 12 10 41 41 H 1.08997 * 109.50128 * 294.68553 * 14 13 12 42 42 H 1.09005 * 109.49986 * 174.58592 * 14 13 12 43 43 H 1.09001 * 109.46054 * 178.61641 * 15 14 13 44 44 H 1.09000 * 109.44707 * 58.64786 * 15 14 13 45 45 H 1.09003 * 109.49953 * 301.41250 * 16 15 14 46 46 H 1.08997 * 109.49869 * 181.31546 * 16 15 14 47 47 H 1.09002 * 109.47099 * 311.92717 * 19 17 12 48 48 H 1.08992 * 109.47381 * 191.92444 * 19 17 12 49 49 H 0.97001 * 119.99785 * 355.08147 * 20 19 17 50 50 H 0.97001 * 119.99702 * 180.02562 * 24 23 21 51 51 H 1.08993 * 109.58856 * 66.42879 * 29 7 6 52 52 H 1.09001 * 109.58484 * 186.85711 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0408 -0.7234 -1.2482 5 6 3.5709 -0.6954 -1.2659 6 6 4.1055 -1.4217 -0.0329 7 7 3.5046 -0.8289 1.1697 8 6 4.2812 -0.3851 2.1779 9 8 5.4867 -0.3483 2.0443 10 6 3.6575 0.0616 3.4605 11 8 2.4702 -0.1041 3.6479 12 7 4.4140 0.6488 4.4090 13 6 5.8257 0.9642 4.1516 14 6 6.0625 2.4473 4.4534 15 6 5.5999 2.7538 5.8796 16 6 4.1015 2.4688 6.0041 17 6 3.8424 0.9859 5.7198 18 1 4.3124 0.3782 6.4930 19 6 2.3354 0.7221 5.7055 20 7 2.0926 -0.7227 5.7021 21 6 0.8130 -1.2022 5.7915 22 1 -0.0172 -0.5152 5.8641 23 6 0.5829 -2.5710 5.7878 24 7 1.5947 -3.4082 5.6988 25 14 -1.1626 -3.2251 5.9090 26 1 -1.1377 -4.7097 5.8849 27 1 -1.7780 -2.7614 7.1784 28 1 -1.9598 -2.7242 4.7606 29 6 2.0413 -0.7236 1.2497 30 1 -0.3633 0.5128 0.8906 31 1 -0.3633 0.5149 -0.8894 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6967 -1.7576 -1.2349 34 1 1.6581 -0.2251 -2.1389 35 1 3.9334 -1.1903 -2.1668 36 1 3.9159 0.3385 -1.2548 37 1 5.1895 -1.3161 0.0103 38 1 3.8412 -2.4775 -0.0909 39 1 6.0608 0.7618 3.1067 40 1 6.4596 0.3545 4.7956 41 1 5.4970 3.0568 3.7486 42 1 7.1249 2.6726 4.3591 43 1 5.7900 3.8031 6.1054 44 1 6.1485 2.1260 6.5819 45 1 3.5542 3.0781 5.2846 46 1 3.7679 2.7095 7.0134 47 1 1.8972 1.1662 4.8117 48 1 1.8806 1.1649 6.5915 49 1 2.8383 -1.3396 5.6366 50 1 1.4338 -4.3648 5.6958 51 1 1.6053 -1.7213 1.2984 52 1 1.7638 -0.1574 2.1389 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505409146.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:05 Heat of formation + Delta-G solvation = -2.687167 kcal Electronic energy + Delta-G solvation = -32513.983877 eV Core-core repulsion = 28515.935234 eV Total energy + Delta-G solvation = -3998.048642 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.90164 -39.23377 -37.64043 -37.01247 -34.38270 -33.56136 -32.47750 -31.97475 -31.82449 -29.77894 -26.87095 -26.58921 -25.58514 -24.33353 -23.56261 -22.63932 -21.97083 -20.94040 -20.36430 -19.85935 -18.78383 -17.06088 -16.67782 -16.37936 -15.63576 -15.56855 -15.10939 -14.78810 -14.56732 -14.49928 -14.25803 -14.20379 -13.83834 -13.53946 -13.44514 -13.35126 -12.91748 -12.87161 -12.66940 -12.52734 -12.30693 -12.14634 -11.85070 -11.66299 -11.61318 -11.13587 -11.07740 -10.90048 -10.85447 -10.79169 -10.71793 -10.70164 -10.58986 -10.43114 -10.30273 -9.92340 -9.54724 -9.49565 -8.77560 -8.51461 -8.11428 -7.94550 -6.60385 -5.59477 -2.80537 1.94342 2.69859 3.51588 3.56026 3.56954 3.69096 3.75268 4.56774 4.70929 4.74312 4.84759 4.90847 4.96905 5.01304 5.04795 5.09682 5.28122 5.31247 5.51617 5.56063 5.56637 5.63681 5.70189 5.71193 5.75409 5.77052 5.77819 5.90005 5.92936 5.96028 6.00848 6.06148 6.06649 6.12372 6.13005 6.18427 6.20567 6.28479 6.39523 6.43592 6.52261 6.54283 6.60693 6.72073 6.95225 7.23733 7.40610 7.77948 7.83370 8.16023 8.57817 8.64886 9.69156 10.28527 10.63036 11.63822 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.007213 B = 0.006445 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3881.006958 B = 4343.331665 C = 7136.999926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.105 4.105 3 H 0.068 0.932 4 C -0.117 4.117 5 C -0.131 4.131 6 C 0.106 3.894 7 N -0.577 5.577 8 C 0.513 3.487 9 O -0.534 6.534 10 C 0.473 3.527 11 O -0.425 6.425 12 N -0.583 5.583 13 C 0.067 3.933 14 C -0.132 4.132 15 C -0.120 4.120 16 C -0.125 4.125 17 C 0.138 3.862 18 H 0.073 0.927 19 C 0.155 3.845 20 N -0.699 5.699 21 C -0.210 4.210 22 H 0.066 0.934 23 C -0.019 4.019 24 N -0.936 5.936 25 Si 0.901 3.099 26 H -0.294 1.294 27 H -0.289 1.289 28 H -0.289 1.289 29 C 0.073 3.927 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.091 0.909 38 H 0.069 0.931 39 H 0.141 0.859 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.069 0.931 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.065 0.935 46 H 0.073 0.927 47 H 0.047 0.953 48 H 0.017 0.983 49 H 0.379 0.621 50 H 0.251 0.749 51 H 0.070 0.930 52 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.084 11.198 -10.987 17.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.125 4.125 3 H 0.086 0.914 4 C -0.155 4.155 5 C -0.169 4.169 6 C -0.017 4.017 7 N -0.309 5.309 8 C 0.298 3.702 9 O -0.413 6.413 10 C 0.254 3.746 11 O -0.295 6.295 12 N -0.319 5.319 13 C -0.055 4.055 14 C -0.170 4.170 15 C -0.158 4.158 16 C -0.164 4.164 17 C 0.035 3.965 18 H 0.091 0.909 19 C 0.028 3.972 20 N -0.342 5.342 21 C -0.342 4.342 22 H 0.084 0.916 23 C -0.214 4.214 24 N -0.586 5.586 25 Si 0.733 3.267 26 H -0.220 1.220 27 H -0.216 1.216 28 H -0.216 1.216 29 C -0.048 4.048 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.110 0.890 38 H 0.087 0.913 39 H 0.158 0.842 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.092 0.908 47 H 0.064 0.936 48 H 0.034 0.966 49 H 0.212 0.788 50 H 0.061 0.939 51 H 0.089 0.911 52 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 6.840 11.082 -10.941 17.008 hybrid contribution -0.629 -0.840 0.011 1.049 sum 6.211 10.242 -10.930 16.215 Atomic orbital electron populations 1.21724 0.94278 1.02269 1.01824 1.21525 0.96190 0.99668 0.95096 0.91352 1.21633 0.94983 1.01042 0.97794 1.21812 0.96353 1.01265 0.97501 1.21590 0.99547 0.96868 0.83669 1.47918 1.08128 1.58295 1.16578 1.20628 0.86532 0.77814 0.85213 1.90339 1.14528 1.54892 1.81582 1.19783 0.87612 0.82049 0.85106 1.90844 1.13385 1.50522 1.74745 1.47636 1.11336 1.59593 1.13362 1.22832 0.81008 0.94403 1.07250 1.21924 1.00962 0.97182 0.96980 1.21539 0.96176 1.00969 0.97071 1.21890 0.96263 0.96087 1.02141 1.21653 0.96634 0.94677 0.83546 0.90937 1.21024 0.89526 0.88424 0.98263 1.42268 1.05955 0.99603 1.86389 1.19088 0.85004 0.90219 1.39861 0.91637 1.24622 0.96650 0.95998 1.04139 1.69654 1.28831 1.01496 1.58657 0.86345 0.85016 0.77637 0.77689 1.22031 1.21641 1.21564 1.23044 0.77232 1.03191 1.01293 0.91927 0.92850 0.92401 0.91705 0.92009 0.90847 0.91685 0.89028 0.91262 0.84225 0.92246 0.92031 0.91267 0.92174 0.91911 0.91579 0.90793 0.93602 0.96559 0.78760 0.93920 0.91148 0.83550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.20 37.16 0.34 -1.35 16 2 C -0.11 -1.32 2.87 -90.50 -0.26 -1.58 16 3 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 4 C -0.12 -1.24 5.17 -26.69 -0.14 -1.38 16 5 C -0.13 -1.37 6.07 -26.83 -0.16 -1.53 16 6 C 0.11 1.37 6.41 -3.94 -0.03 1.35 16 7 N -0.58 -9.21 2.98 -173.55 -0.52 -9.73 16 8 C 0.51 9.15 7.61 -11.58 -0.09 9.06 16 9 O -0.53 -9.57 12.55 5.49 0.07 -9.50 16 10 C 0.47 9.04 7.12 -11.59 -0.08 8.96 16 11 O -0.42 -9.18 7.13 5.50 0.04 -9.14 16 12 N -0.58 -9.93 2.97 -165.72 -0.49 -10.43 16 13 C 0.07 0.97 6.06 -3.71 -0.02 0.94 16 14 C -0.13 -1.53 6.08 -26.61 -0.16 -1.70 16 15 C -0.12 -1.35 5.88 -26.69 -0.16 -1.50 16 16 C -0.12 -1.64 5.35 -26.61 -0.14 -1.79 16 17 C 0.14 2.34 2.91 -67.60 -0.20 2.14 16 18 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 19 C 0.16 3.21 4.88 -4.04 -0.02 3.19 16 20 N -0.70 -17.92 3.32 -59.91 -0.20 -18.12 16 21 C -0.21 -5.93 9.78 -15.06 -0.15 -6.08 16 22 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 23 C -0.02 -0.56 5.50 -17.43 -0.10 -0.66 16 24 N -0.94 -28.94 13.06 55.49 0.72 -28.22 16 25 Si 0.90 22.97 29.55 -169.99 -5.02 17.95 16 26 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 27 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 28 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 29 C 0.07 1.18 5.28 -3.71 -0.02 1.16 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.09 1.21 7.00 -51.93 -0.36 0.85 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.14 2.18 4.14 -55.61 -0.23 1.95 16 40 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 46 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.05 1.00 6.11 -51.92 -0.32 0.68 16 48 H 0.02 0.34 8.10 -51.93 -0.42 -0.08 16 49 H 0.38 10.56 7.28 -40.82 -0.30 10.27 16 50 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 51 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 52 H 0.15 2.75 4.28 -54.90 -0.24 2.52 16 LS Contribution 388.67 15.07 5.86 5.86 Total: -1.00 -31.59 388.67 -9.94 -41.53 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: -9.02 Total: 10.57 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: -1.38 Total: 9.23 kcal Atomic # 7 Polarization: -66.01 SS G_CDS: -0.48 Total: -66.49 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: 0.11 Total: -18.64 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.02 Total: 17.95 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.59 -9.94 -41.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505409146.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.845 kcal (2) G-P(sol) polarization free energy of solvation -31.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds