Wall clock time and date at job start Tue Mar 31 2020 21:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08991 * 109.49803 * 2 1 4 4 C 1.53042 * 109.49549 * 239.90391 * 2 1 3 5 5 C 1.53047 * 109.53844 * 178.68320 * 4 2 1 6 6 C 1.52761 * 109.37799 * 61.24001 * 5 4 2 7 7 N 1.46921 * 109.01032 * 305.58734 * 6 5 4 8 8 C 1.34779 * 120.63292 * 233.58823 * 7 6 5 9 9 O 1.21352 * 119.99995 * 7.40428 * 8 7 6 10 10 C 1.49450 * 120.00071 * 187.41342 * 8 7 6 11 11 O 1.21344 * 120.00224 * 7.68286 * 10 8 7 12 12 N 1.34775 * 119.99711 * 187.69033 * 10 8 7 13 13 C 1.46923 * 120.63333 * 5.43266 * 12 10 8 14 14 C 1.53189 * 108.77746 * 126.37147 * 13 12 10 15 15 C 1.53044 * 109.31380 * 54.63654 * 14 13 12 16 16 C 1.53039 * 109.53710 * 298.63818 * 15 14 13 17 17 C 1.46925 * 120.62854 * 185.41412 * 12 10 8 18 18 H 1.09003 * 109.70475 * 113.77342 * 17 12 10 19 19 C 1.52998 * 109.59060 * 353.41411 * 17 12 10 20 20 N 1.46503 * 109.46876 * 71.92045 * 19 17 12 21 21 C 1.36939 * 120.00056 * 175.07977 * 20 19 17 22 22 H 1.08006 * 119.99703 * 0.02562 * 21 20 19 23 23 C 1.38806 * 120.00308 * 179.97438 * 21 20 19 24 24 N 1.31624 * 119.99778 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00289 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47278 * 180.02562 * 25 23 21 27 27 H 1.48498 * 109.47325 * 300.00180 * 25 23 21 28 28 H 1.48504 * 109.47074 * 60.00086 * 25 23 21 29 29 C 1.46928 * 118.73835 * 53.31632 * 7 6 5 30 30 H 1.08999 * 109.46768 * 299.93100 * 1 2 3 31 31 H 1.08997 * 109.47144 * 59.93220 * 1 2 3 32 32 H 1.08998 * 109.47147 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46446 * 298.70662 * 4 2 1 34 34 H 1.09003 * 109.45953 * 58.66192 * 4 2 1 35 35 H 1.08995 * 109.49560 * 181.31803 * 5 4 2 36 36 H 1.09004 * 109.49310 * 301.38551 * 5 4 2 37 37 H 1.08999 * 109.50795 * 185.70720 * 6 5 4 38 38 H 1.08993 * 109.43260 * 65.42781 * 6 5 4 39 39 H 1.09003 * 109.58959 * 6.58514 * 13 12 10 40 40 H 1.09009 * 109.58786 * 246.16061 * 13 12 10 41 41 H 1.08997 * 109.50128 * 294.68553 * 14 13 12 42 42 H 1.09005 * 109.49986 * 174.58592 * 14 13 12 43 43 H 1.09001 * 109.46054 * 178.61641 * 15 14 13 44 44 H 1.09000 * 109.44707 * 58.64786 * 15 14 13 45 45 H 1.09003 * 109.49953 * 301.41250 * 16 15 14 46 46 H 1.08997 * 109.49869 * 181.31546 * 16 15 14 47 47 H 1.09002 * 109.47099 * 311.92717 * 19 17 12 48 48 H 1.08992 * 109.47381 * 191.92444 * 19 17 12 49 49 H 0.97001 * 119.99785 * 355.08147 * 20 19 17 50 50 H 0.97001 * 119.99702 * 180.02562 * 24 23 21 51 51 H 1.08993 * 109.58856 * 66.42879 * 29 7 6 52 52 H 1.09001 * 109.58484 * 186.85711 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0408 -0.7234 -1.2482 5 6 3.5709 -0.6954 -1.2659 6 6 4.1055 -1.4217 -0.0329 7 7 3.5046 -0.8289 1.1697 8 6 4.2812 -0.3851 2.1779 9 8 5.4867 -0.3483 2.0443 10 6 3.6575 0.0616 3.4605 11 8 2.4702 -0.1041 3.6479 12 7 4.4140 0.6488 4.4090 13 6 5.8257 0.9642 4.1516 14 6 6.0625 2.4473 4.4534 15 6 5.5999 2.7538 5.8796 16 6 4.1015 2.4688 6.0041 17 6 3.8424 0.9859 5.7198 18 1 4.3124 0.3782 6.4930 19 6 2.3354 0.7221 5.7055 20 7 2.0926 -0.7227 5.7021 21 6 0.8130 -1.2022 5.7915 22 1 -0.0172 -0.5152 5.8641 23 6 0.5829 -2.5710 5.7878 24 7 1.5947 -3.4082 5.6988 25 14 -1.1626 -3.2251 5.9090 26 1 -1.1377 -4.7097 5.8849 27 1 -1.7780 -2.7614 7.1784 28 1 -1.9598 -2.7242 4.7606 29 6 2.0413 -0.7236 1.2497 30 1 -0.3633 0.5128 0.8906 31 1 -0.3633 0.5149 -0.8894 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6967 -1.7576 -1.2349 34 1 1.6581 -0.2251 -2.1389 35 1 3.9334 -1.1903 -2.1668 36 1 3.9159 0.3385 -1.2548 37 1 5.1895 -1.3161 0.0103 38 1 3.8412 -2.4775 -0.0909 39 1 6.0608 0.7618 3.1067 40 1 6.4596 0.3545 4.7956 41 1 5.4970 3.0568 3.7486 42 1 7.1249 2.6726 4.3591 43 1 5.7900 3.8031 6.1054 44 1 6.1485 2.1260 6.5819 45 1 3.5542 3.0781 5.2846 46 1 3.7679 2.7095 7.0134 47 1 1.8972 1.1662 4.8117 48 1 1.8806 1.1649 6.5915 49 1 2.8383 -1.3396 5.6366 50 1 1.4338 -4.3648 5.6958 51 1 1.6053 -1.7213 1.2984 52 1 1.7638 -0.1574 2.1389 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505409146.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:03 Heat of formation + Delta-G solvation = -21.801619 kcal Electronic energy + Delta-G solvation = -32514.812741 eV Core-core repulsion = 28515.935234 eV Total energy + Delta-G solvation = -3998.877507 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.29541 -40.51606 -38.95213 -38.28044 -36.26612 -34.70696 -33.73007 -33.61778 -32.98589 -31.50407 -28.18938 -27.75555 -27.06499 -25.83164 -24.76051 -24.31545 -23.18597 -22.26870 -21.50870 -20.98061 -20.12479 -19.04140 -18.01045 -17.80775 -17.06382 -16.89803 -16.58093 -16.43579 -15.84122 -15.63659 -15.53284 -15.29619 -15.22815 -15.12157 -14.86194 -14.56283 -14.31653 -14.10434 -13.95692 -13.85121 -13.61710 -13.47811 -13.14342 -13.00941 -12.80487 -12.71795 -12.66284 -12.31418 -12.17938 -12.04872 -11.97686 -11.87586 -11.80106 -11.71385 -11.58453 -11.48328 -11.33189 -10.85910 -10.76674 -9.83929 -9.55116 -9.38434 -8.68922 -7.82931 -5.03835 0.50129 1.37140 1.45606 1.49021 1.54403 2.25535 2.41910 2.62376 3.23918 3.51461 3.73529 3.79966 3.86119 3.88411 3.93493 4.02257 4.04753 4.14431 4.29001 4.34215 4.36849 4.43322 4.50055 4.54646 4.59530 4.66851 4.79047 4.83451 4.87122 4.90064 4.91465 4.97467 5.02050 5.03524 5.07283 5.10644 5.13804 5.17091 5.22304 5.26646 5.29304 5.35268 5.44326 5.49018 5.51847 5.56188 5.78065 6.05411 6.36552 6.37195 6.77886 7.18337 7.43583 8.20895 8.44525 9.41233 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.007213 B = 0.006445 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3881.006958 B = 4343.331665 C = 7136.999926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.098 4.098 3 H 0.070 0.930 4 C -0.113 4.113 5 C -0.122 4.122 6 C 0.099 3.901 7 N -0.575 5.575 8 C 0.506 3.494 9 O -0.538 6.538 10 C 0.468 3.532 11 O -0.460 6.460 12 N -0.580 5.580 13 C 0.063 3.937 14 C -0.124 4.124 15 C -0.115 4.115 16 C -0.117 4.117 17 C 0.141 3.859 18 H 0.062 0.938 19 C 0.158 3.842 20 N -0.709 5.709 21 C -0.206 4.206 22 H 0.067 0.933 23 C -0.081 4.081 24 N -0.974 5.974 25 Si 0.964 3.036 26 H -0.300 1.300 27 H -0.280 1.280 28 H -0.282 1.282 29 C 0.076 3.924 30 H 0.045 0.955 31 H 0.079 0.921 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.087 0.913 35 H 0.102 0.898 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.132 0.868 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.095 0.905 43 H 0.088 0.912 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.088 0.912 47 H 0.038 0.962 48 H 0.020 0.980 49 H 0.364 0.636 50 H 0.243 0.757 51 H 0.048 0.952 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.684 13.156 -12.352 19.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.117 4.117 3 H 0.088 0.912 4 C -0.150 4.150 5 C -0.160 4.160 6 C -0.022 4.022 7 N -0.306 5.306 8 C 0.290 3.710 9 O -0.419 6.419 10 C 0.250 3.750 11 O -0.333 6.333 12 N -0.316 5.316 13 C -0.058 4.058 14 C -0.162 4.162 15 C -0.152 4.152 16 C -0.155 4.155 17 C 0.038 3.962 18 H 0.080 0.920 19 C 0.032 3.968 20 N -0.349 5.349 21 C -0.339 4.339 22 H 0.085 0.915 23 C -0.272 4.272 24 N -0.627 5.627 25 Si 0.794 3.206 26 H -0.227 1.227 27 H -0.207 1.207 28 H -0.209 1.209 29 C -0.045 4.045 30 H 0.065 0.935 31 H 0.098 0.902 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.105 0.895 35 H 0.121 0.879 36 H 0.084 0.916 37 H 0.108 0.892 38 H 0.090 0.910 39 H 0.149 0.851 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.113 0.887 43 H 0.106 0.894 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.106 0.894 47 H 0.055 0.945 48 H 0.038 0.962 49 H 0.195 0.805 50 H 0.052 0.948 51 H 0.066 0.934 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 7.452 13.100 -12.311 19.460 hybrid contribution -0.744 -1.383 0.401 1.621 sum 6.708 11.717 -11.910 18.003 Atomic orbital electron populations 1.21712 0.93731 1.02067 1.02302 1.21462 0.96561 0.99384 0.94269 0.91180 1.21626 0.95106 1.00917 0.97397 1.21783 0.96040 1.01180 0.96954 1.21855 0.99463 0.97320 0.83612 1.48059 1.08052 1.57485 1.17005 1.20476 0.86664 0.78552 0.85265 1.90343 1.14358 1.55499 1.81688 1.20232 0.87517 0.81395 0.85905 1.90856 1.14669 1.51955 1.75852 1.47850 1.12345 1.58467 1.12900 1.22957 0.79208 0.96874 1.06711 1.21889 1.02657 0.94417 0.97275 1.21532 0.94189 1.02748 0.96735 1.21855 0.98205 0.92556 1.02913 1.21606 0.93834 0.97463 0.83306 0.91979 1.21064 0.92464 0.85662 0.97619 1.42349 1.04532 1.01344 1.86701 1.19413 0.86174 0.90428 1.37881 0.91507 1.25342 1.00236 0.96357 1.05301 1.69828 1.30733 1.01096 1.61062 0.85332 0.80839 0.76403 0.77992 1.22661 1.20653 1.20871 1.22858 0.77411 1.01829 1.02420 0.93548 0.90223 0.92948 0.91857 0.89462 0.87922 0.91624 0.89208 0.91021 0.85130 0.92202 0.92082 0.88654 0.89383 0.91598 0.91533 0.89390 0.94473 0.96213 0.80488 0.94793 0.93398 0.86272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 9.20 71.98 0.66 -2.57 16 2 C -0.10 -2.39 2.87 -10.71 -0.03 -2.42 16 3 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 4 C -0.11 -2.15 5.17 30.62 0.16 -1.99 16 5 C -0.12 -2.24 6.07 30.53 0.19 -2.06 16 6 C 0.10 2.50 6.41 86.22 0.55 3.05 16 7 N -0.57 -18.73 2.98 -821.33 -2.45 -21.18 16 8 C 0.51 18.55 7.61 87.27 0.66 19.21 16 9 O -0.54 -19.45 12.55 -3.25 -0.04 -19.49 16 10 C 0.47 18.59 7.12 87.27 0.62 19.21 16 11 O -0.46 -21.01 7.13 -3.23 -0.02 -21.03 16 12 N -0.58 -20.02 2.97 -796.59 -2.37 -22.38 16 13 C 0.06 1.78 6.06 86.36 0.52 2.30 16 14 C -0.12 -2.56 6.08 30.67 0.19 -2.37 16 15 C -0.11 -2.22 5.88 30.62 0.18 -2.04 16 16 C -0.12 -2.86 5.35 30.67 0.16 -2.69 16 17 C 0.14 4.80 2.91 44.98 0.13 4.93 16 18 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 19 C 0.16 6.72 4.88 86.38 0.42 7.14 16 20 N -0.71 -37.76 3.32 -343.45 -1.14 -38.90 16 21 C -0.21 -12.03 9.78 84.03 0.82 -11.20 16 22 H 0.07 3.79 7.83 -2.91 -0.02 3.77 16 23 C -0.08 -4.89 5.50 84.86 0.47 -4.43 16 24 N -0.97 -62.56 13.06 21.65 0.28 -62.28 16 25 Si 0.96 48.50 29.55 68.60 2.03 50.53 16 26 H -0.30 -15.26 7.11 99.48 0.71 -14.55 16 27 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 28 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 29 C 0.08 2.55 5.28 86.36 0.46 3.01 16 30 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 34 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 37 H 0.09 2.31 7.00 -2.39 -0.02 2.30 16 38 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.13 4.01 4.14 -60.69 -0.25 3.76 16 40 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 41 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 43 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 47 H 0.04 1.68 6.11 -2.41 -0.01 1.67 16 48 H 0.02 0.84 8.10 -2.39 -0.02 0.82 16 49 H 0.36 21.28 7.28 -92.71 -0.67 20.60 16 50 H 0.24 15.32 8.31 -92.71 -0.77 14.55 16 51 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 52 H 0.12 4.79 4.28 -49.67 -0.21 4.57 16 Total: -1.00 -71.43 388.67 2.24 -69.18 By element: Atomic # 1 Polarization: 38.69 SS G_CDS: -0.21 Total: 38.48 kcal Atomic # 6 Polarization: 20.91 SS G_CDS: 6.16 Total: 27.08 kcal Atomic # 7 Polarization: -139.07 SS G_CDS: -5.67 Total: -144.74 kcal Atomic # 8 Polarization: -40.46 SS G_CDS: -0.06 Total: -40.52 kcal Atomic # 14 Polarization: 48.50 SS G_CDS: 2.03 Total: 50.53 kcal Total: -71.43 2.24 -69.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505409146.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.383 kcal (2) G-P(sol) polarization free energy of solvation -71.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds