Wall clock time and date at job start Tue Mar 31 2020 22:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 115.55639 * 2 1 4 4 C 1.52998 * 117.50012 * 145.69450 * 2 1 3 5 5 C 1.52999 * 60.00295 * 107.48762 * 4 2 1 6 6 H 1.08999 * 117.50071 * 252.51221 * 5 4 2 7 7 C 1.50700 * 117.49746 * 107.50782 * 5 4 2 8 8 O 1.21279 * 120.00430 * 291.25895 * 7 5 4 9 9 N 1.34777 * 119.99647 * 111.25399 * 7 5 4 10 10 C 1.46927 * 120.63222 * 354.67975 * 9 7 5 11 11 C 1.53197 * 108.77269 * 126.36494 * 10 9 7 12 12 C 1.53039 * 109.30980 * 54.64013 * 11 10 9 13 13 C 1.53037 * 109.53682 * 298.62888 * 12 11 10 14 14 C 1.46927 * 120.62911 * 174.39961 * 9 7 5 15 15 H 1.09001 * 109.58689 * 113.84853 * 14 9 7 16 16 C 1.53002 * 109.58655 * 353.41971 * 14 9 7 17 17 N 1.46899 * 109.47197 * 74.27609 * 16 14 9 18 18 C 1.46900 * 110.99908 * 66.04137 * 17 16 14 19 19 C 1.46889 * 111.00283 * 190.00049 * 17 16 14 20 20 C 1.50703 * 109.47475 * 169.99939 * 19 17 16 21 21 O 1.21291 * 119.99669 * 359.97438 * 20 19 17 22 22 N 1.34781 * 120.00116 * 179.97438 * 20 19 17 23 23 C 1.37094 * 119.99901 * 179.97438 * 22 20 19 24 24 H 1.08002 * 120.00043 * 0.02562 * 23 22 20 25 25 C 1.38942 * 119.99825 * 179.97438 * 23 22 20 26 26 N 1.31410 * 120.00518 * 0.02562 * 25 23 22 27 27 Si 1.86806 * 120.00034 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.47030 * 59.99978 * 27 25 23 29 29 H 1.48497 * 109.47356 * 180.02562 * 27 25 23 30 30 H 1.48497 * 109.47090 * 300.00116 * 27 25 23 31 31 H 1.09001 * 109.46939 * 205.68483 * 1 2 3 32 32 H 1.09000 * 109.47339 * 325.68461 * 1 2 3 33 33 H 1.09004 * 109.46958 * 85.69026 * 1 2 3 34 34 H 1.09005 * 117.49903 * 359.97438 * 4 2 1 35 35 H 1.08998 * 117.51257 * 214.97355 * 4 2 1 36 36 H 1.08996 * 109.59117 * 246.15253 * 10 9 7 37 37 H 1.09000 * 109.58705 * 6.44252 * 10 9 7 38 38 H 1.09000 * 109.49175 * 174.58643 * 11 10 9 39 39 H 1.08995 * 109.50018 * 294.68548 * 11 10 9 40 40 H 1.08997 * 109.46107 * 58.65297 * 12 11 10 41 41 H 1.09006 * 109.45851 * 178.62393 * 12 11 10 42 42 H 1.09007 * 109.49602 * 181.31563 * 13 12 11 43 43 H 1.09002 * 109.49829 * 301.41223 * 13 12 11 44 44 H 1.09004 * 109.46913 * 194.27339 * 16 14 9 45 45 H 1.09000 * 109.47170 * 314.27588 * 16 14 9 46 46 H 1.09003 * 109.47012 * 60.00546 * 18 17 16 47 47 H 1.09004 * 109.47374 * 180.02562 * 18 17 16 48 48 H 1.09000 * 109.47684 * 300.00518 * 18 17 16 49 49 H 1.09000 * 109.47290 * 289.99999 * 19 17 16 50 50 H 1.09001 * 109.47536 * 49.99911 * 19 17 16 51 51 H 0.96996 * 119.99772 * 359.97438 * 22 20 19 52 52 H 0.96996 * 120.00738 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2365 -1.1210 0.7649 5 6 2.2365 -1.1210 -0.7651 6 1 1.6112 -1.8584 -1.2684 7 6 3.5294 -0.7815 -1.4609 8 8 3.9712 0.3465 -1.4031 9 7 4.1948 -1.7315 -2.1474 10 6 3.7357 -3.1271 -2.1308 11 6 3.5668 -3.6077 -3.5756 12 6 4.8743 -3.3851 -4.3392 13 6 5.2052 -1.8912 -4.3628 14 6 5.3895 -1.3900 -2.9315 15 1 6.2648 -1.8669 -2.4902 16 6 5.5795 0.1281 -2.9421 17 7 6.0799 0.5681 -1.6330 18 6 7.4312 0.0485 -1.3842 19 6 6.0506 2.0326 -1.5233 20 6 6.3330 2.4355 -0.0988 21 8 6.5380 1.5861 0.7423 22 7 6.3577 3.7397 0.2404 23 6 6.6141 4.1062 1.5363 24 1 6.7966 3.3498 2.2853 25 6 6.6401 5.4507 1.8859 26 7 6.4184 6.3710 0.9745 27 14 6.9901 5.9501 3.6516 28 1 8.3299 5.4495 4.0513 29 1 6.9610 7.4306 3.7623 30 1 5.9571 5.3670 4.5450 31 1 -0.3633 -0.9261 0.4454 32 1 -0.3634 0.8488 0.5793 33 1 -0.3633 0.0772 -1.0248 34 1 1.6113 -1.8584 1.2685 35 1 3.1716 -0.8755 1.2682 36 1 4.4733 -3.7484 -1.6230 37 1 2.7814 -3.1917 -1.6081 38 1 3.3195 -4.6692 -3.5792 39 1 2.7654 -3.0453 -4.0547 40 1 5.6801 -3.9279 -3.8452 41 1 4.7645 -3.7488 -5.3609 42 1 6.1242 -1.7310 -4.9267 43 1 4.3884 -1.3450 -4.8346 44 1 6.2982 0.3989 -3.7156 45 1 4.6248 0.6123 -3.1476 46 1 8.1083 0.4119 -2.1573 47 1 7.7775 0.3889 -0.4082 48 1 7.4106 -1.0412 -1.4022 49 1 6.8083 2.4614 -2.1791 50 1 5.0669 2.3994 -1.8163 51 1 6.1941 4.4190 -0.4324 52 1 6.4370 7.3096 1.2184 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566124542.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:21 Heat of formation + Delta-G solvation = -4.692573 kcal Electronic energy + Delta-G solvation = -31491.791240 eV Core-core repulsion = 27493.655637 eV Total energy + Delta-G solvation = -3998.135603 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.54 seconds Orbital eigenvalues (eV) -40.56490 -38.32855 -37.90051 -36.44427 -35.66063 -33.67078 -32.80194 -31.80761 -31.03799 -28.72311 -27.72834 -26.99604 -25.27877 -24.42392 -23.98839 -22.67193 -21.15087 -20.62488 -20.22420 -18.96645 -18.60269 -17.64559 -17.05015 -16.08007 -15.82254 -15.23361 -15.20084 -14.82496 -14.66638 -14.39857 -14.05025 -13.88210 -13.80711 -13.69013 -13.41286 -13.20091 -13.17339 -12.95075 -12.55662 -12.52092 -12.13031 -11.92652 -11.84619 -11.71203 -11.39416 -11.33571 -11.24795 -11.12367 -11.02554 -10.96281 -10.78588 -10.66073 -10.56654 -10.34406 -10.12960 -10.06906 -9.90553 -9.30477 -8.79737 -8.30523 -8.10024 -7.78228 -7.32485 -6.26394 -3.66271 2.92426 3.08982 3.29120 3.33049 3.38028 3.98209 4.15565 4.20764 4.38378 4.48286 4.59054 4.70487 4.76434 4.89492 4.92198 5.02200 5.10554 5.13708 5.26091 5.32058 5.38380 5.39634 5.42584 5.50707 5.58622 5.63203 5.69462 5.70628 5.73219 5.73855 5.80243 5.81908 5.82604 5.94057 5.98577 6.04772 6.04934 6.17278 6.22198 6.27042 6.38282 6.46487 6.55545 6.74856 6.80582 7.66862 7.69292 7.71384 7.83086 8.24432 8.72675 8.81431 9.35240 9.74655 10.28746 10.92005 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013149 B = 0.003400 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.878260 B = 8232.205064 C = 9658.785109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.124 4.124 3 H 0.119 0.881 4 C -0.149 4.149 5 C -0.189 4.189 6 H 0.113 0.887 7 C 0.530 3.470 8 O -0.466 6.466 9 N -0.608 5.608 10 C 0.111 3.889 11 C -0.136 4.136 12 C -0.117 4.117 13 C -0.131 4.131 14 C 0.154 3.846 15 H 0.071 0.929 16 C 0.067 3.933 17 N -0.478 5.478 18 C 0.013 3.987 19 C 0.063 3.937 20 C 0.456 3.544 21 O -0.577 6.577 22 N -0.572 5.572 23 C -0.293 4.293 24 H 0.100 0.900 25 C 0.019 3.981 26 N -0.906 5.906 27 Si 0.928 3.072 28 H -0.275 1.275 29 H -0.286 1.286 30 H -0.275 1.275 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.063 0.937 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.019 0.981 45 H 0.089 0.911 46 H 0.005 0.995 47 H 0.091 0.909 48 H 0.052 0.948 49 H 0.032 0.968 50 H 0.089 0.911 51 H 0.390 0.610 52 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.967 -19.418 -11.876 24.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.142 4.142 3 H 0.137 0.863 4 C -0.186 4.186 5 C -0.211 4.211 6 H 0.131 0.869 7 C 0.316 3.684 8 O -0.337 6.337 9 N -0.344 5.344 10 C -0.012 4.012 11 C -0.174 4.174 12 C -0.155 4.155 13 C -0.170 4.170 14 C 0.050 3.950 15 H 0.089 0.911 16 C -0.061 4.061 17 N -0.201 5.201 18 C -0.135 4.135 19 C -0.069 4.069 20 C 0.242 3.758 21 O -0.461 6.461 22 N -0.209 5.209 23 C -0.423 4.423 24 H 0.118 0.882 25 C -0.181 4.181 26 N -0.548 5.548 27 Si 0.755 3.245 28 H -0.201 1.201 29 H -0.211 1.211 30 H -0.200 1.200 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.114 0.886 35 H 0.122 0.878 36 H 0.081 0.919 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.037 0.963 45 H 0.107 0.893 46 H 0.024 0.976 47 H 0.109 0.891 48 H 0.071 0.929 49 H 0.050 0.950 50 H 0.107 0.893 51 H 0.223 0.777 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.903 -19.311 -10.864 23.879 hybrid contribution 0.634 0.811 -0.270 1.064 sum -8.269 -18.499 -11.134 23.121 Atomic orbital electron populations 1.21376 0.92770 1.01904 1.01726 1.22355 0.94622 0.95577 1.01662 0.86268 1.23063 1.03395 1.01209 0.90979 1.22352 0.98272 1.04678 0.95759 0.86927 1.19522 0.84283 0.85430 0.79126 1.90892 1.64727 1.20626 1.57431 1.47773 1.28567 1.07753 1.50318 1.21637 1.00453 0.82649 0.96478 1.21938 0.98229 1.01158 0.96081 1.21482 0.97535 0.96187 1.00287 1.21892 1.02275 0.96193 0.96613 1.21135 0.87704 0.96069 0.90049 0.91085 1.22246 1.00555 0.93352 0.89943 1.61802 1.21295 1.09069 1.27981 1.22668 0.89262 0.99240 1.02349 1.21650 1.01076 0.88315 0.95832 1.19832 0.83292 0.83109 0.89613 1.90446 1.54048 1.50048 1.51535 1.41860 1.63037 1.05378 1.10661 1.19611 1.44413 0.92003 0.86240 0.88235 1.25204 0.97899 0.95477 0.99537 1.69609 1.50498 1.01024 1.33718 0.85968 0.79038 0.77048 0.82417 1.20086 1.21104 1.20027 0.92771 0.91765 0.92331 0.88564 0.87813 0.91877 0.89765 0.91069 0.91586 0.91821 0.91857 0.90963 0.91510 0.96302 0.89260 0.97645 0.89067 0.92926 0.94986 0.89262 0.77670 0.92070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.20 10.19 37.16 0.38 -0.82 16 2 C -0.12 -1.61 5.92 -90.62 -0.54 -2.15 16 3 H 0.12 1.95 7.67 -51.93 -0.40 1.55 16 4 C -0.15 -1.87 9.88 -26.73 -0.26 -2.13 16 5 C -0.19 -2.30 4.70 -91.77 -0.43 -2.73 16 6 H 0.11 1.08 6.81 -51.93 -0.35 0.72 16 7 C 0.53 7.89 7.21 -10.99 -0.08 7.82 16 8 O -0.47 -8.72 9.09 5.56 0.05 -8.67 16 9 N -0.61 -7.47 2.98 -165.47 -0.49 -7.96 16 10 C 0.11 0.98 6.35 -3.71 -0.02 0.95 16 11 C -0.14 -0.95 6.08 -26.61 -0.16 -1.11 16 12 C -0.12 -0.86 5.89 -26.69 -0.16 -1.02 16 13 C -0.13 -1.20 5.30 -26.83 -0.14 -1.34 16 14 C 0.15 1.90 2.94 -67.82 -0.20 1.70 16 15 H 0.07 0.93 6.06 -51.93 -0.31 0.61 16 16 C 0.07 1.01 3.64 -3.82 -0.01 1.00 16 17 N -0.48 -8.98 2.35 -244.37 -0.57 -9.56 16 18 C 0.01 0.23 8.99 60.06 0.54 0.77 16 19 C 0.06 1.30 4.76 -4.98 -0.02 1.28 16 20 C 0.46 11.73 7.47 -10.98 -0.08 11.65 16 21 O -0.58 -16.56 13.91 5.55 0.08 -16.49 16 22 N -0.57 -15.59 5.29 -10.96 -0.06 -15.65 16 23 C -0.29 -8.61 9.68 -14.94 -0.14 -8.75 16 24 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 25 C 0.02 0.55 5.50 -17.47 -0.10 0.45 16 26 N -0.91 -25.89 13.05 55.50 0.72 -25.16 16 27 Si 0.93 22.03 29.55 -169.99 -5.02 17.00 16 28 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 29 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 30 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 31 H 0.05 0.46 7.90 -51.93 -0.41 0.05 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.10 0.95 8.05 -51.93 -0.42 0.54 16 35 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.65 5.61 -51.93 -0.29 0.36 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.02 0.27 8.05 -51.93 -0.42 -0.15 16 45 H 0.09 1.45 6.09 -51.93 -0.32 1.13 16 46 H 0.01 0.09 8.14 -51.93 -0.42 -0.34 16 47 H 0.09 2.00 5.83 -51.93 -0.30 1.70 16 48 H 0.05 0.85 6.23 -51.93 -0.32 0.53 16 49 H 0.03 0.62 8.12 -51.93 -0.42 0.20 16 50 H 0.09 1.83 7.22 -51.93 -0.38 1.46 16 51 H 0.39 10.30 7.90 -40.82 -0.32 9.98 16 52 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 398.60 15.07 6.01 6.01 Total: -1.00 -33.64 398.60 -9.55 -43.19 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: -8.83 Total: 11.74 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: -1.44 Total: 5.55 kcal Atomic # 7 Polarization: -57.93 SS G_CDS: -0.40 Total: -58.33 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: 0.13 Total: -25.16 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.64 -9.55 -43.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566124542.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.501 kcal (2) G-P(sol) polarization free energy of solvation -33.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.54 seconds