Wall clock time and date at job start Tue Mar 31 2020 22:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.01484 * 2 1 4 4 C 1.53871 * 110.07586 * 121.41899 * 2 1 3 5 5 C 1.54269 * 106.59813 * 119.30662 * 4 2 1 6 6 C 1.54885 * 104.19677 * 23.61322 * 5 4 2 7 7 H 1.09002 * 110.75709 * 80.37016 * 6 5 4 8 8 C 1.53001 * 110.91553 * 203.66819 * 6 5 4 9 9 C 1.50695 * 109.46965 * 290.95567 * 8 6 5 10 10 O 1.21276 * 120.00365 * 359.97438 * 9 8 6 11 11 N 1.34780 * 120.00082 * 179.97438 * 9 8 6 12 12 C 1.46497 * 120.00357 * 179.97438 * 11 9 8 13 13 H 1.09006 * 112.85065 * 336.19457 * 12 11 9 14 14 C 1.53777 * 113.61416 * 107.50571 * 12 11 9 15 15 C 1.53773 * 87.08120 * 89.11770 * 14 12 11 16 16 H 1.09004 * 113.61871 * 270.88129 * 15 14 12 17 17 N 1.46906 * 113.61719 * 139.97948 * 15 14 12 18 18 C 1.46900 * 110.99761 * 107.49867 * 17 15 14 19 19 C 1.50708 * 109.46786 * 180.02562 * 18 17 15 20 20 O 1.21286 * 120.00157 * 359.97438 * 19 18 17 21 21 N 1.34777 * 119.99700 * 180.02562 * 19 18 17 22 22 C 1.37096 * 119.99798 * 179.97438 * 21 19 18 23 23 H 1.07999 * 120.00033 * 0.02562 * 22 21 19 24 24 C 1.38948 * 120.00039 * 179.97438 * 22 21 19 25 25 N 1.31413 * 119.99959 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00261 * 180.02562 * 24 22 21 27 27 H 1.48507 * 109.46763 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.47352 * 120.00353 * 26 24 22 29 29 H 1.48501 * 109.47413 * 240.00560 * 26 24 22 30 30 C 1.53782 * 87.08590 * 25.43247 * 15 14 12 31 31 C 1.54271 * 110.03332 * 238.61094 * 2 1 3 32 32 H 1.09006 * 109.46861 * 181.38558 * 1 2 3 33 33 H 1.08994 * 109.47236 * 301.38830 * 1 2 3 34 34 H 1.09006 * 109.47062 * 61.39273 * 1 2 3 35 35 H 1.09000 * 110.03307 * 238.59414 * 4 2 1 36 36 H 1.09002 * 110.03084 * 0.02709 * 4 2 1 37 37 H 1.09002 * 110.48538 * 264.93327 * 5 4 2 38 38 H 1.08996 * 110.48433 * 142.29362 * 5 4 2 39 39 H 1.09002 * 109.46817 * 50.94835 * 8 6 5 40 40 H 1.08995 * 109.47253 * 170.95439 * 8 6 5 41 41 H 0.97004 * 119.99642 * 0.02562 * 11 9 8 42 42 H 1.09003 * 113.61239 * 203.66566 * 14 12 11 43 43 H 1.08997 * 113.61493 * 334.56356 * 14 12 11 44 44 H 1.00894 * 111.00146 * 231.45772 * 17 15 14 45 45 H 1.08998 * 109.47747 * 300.00254 * 18 17 15 46 46 H 1.08998 * 109.47452 * 60.00838 * 18 17 15 47 47 H 0.97000 * 120.00485 * 359.97438 * 21 19 18 48 48 H 0.97005 * 119.99757 * 179.97438 * 25 24 22 49 49 H 1.08996 * 113.61765 * 220.01976 * 30 15 14 50 50 H 1.09000 * 113.61101 * 89.11436 * 30 15 14 51 51 H 1.09002 * 110.48367 * 98.37848 * 31 2 1 52 52 H 1.09002 * 110.59675 * 335.78962 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0582 -0.7534 1.2333 5 6 2.8891 -1.9398 0.7025 6 6 3.3144 -1.4993 -0.7202 7 1 4.1713 -0.8270 -0.6764 8 6 3.6248 -2.7135 -1.5979 9 6 4.8838 -3.3800 -1.1064 10 8 5.4749 -2.9282 -0.1487 11 7 5.3529 -4.4783 -1.7311 12 6 6.5771 -5.1259 -1.2536 13 1 7.2252 -4.4484 -0.6976 14 6 6.3277 -6.4659 -0.5416 15 6 6.4500 -7.1323 -1.9220 16 1 5.5044 -7.1991 -2.4601 17 7 7.1855 -8.4038 -1.8986 18 6 6.2755 -9.5418 -2.0857 19 6 7.0641 -10.8257 -2.0553 20 8 8.2658 -10.7957 -1.8942 21 7 6.4339 -12.0073 -2.2082 22 6 7.1513 -13.1753 -2.1811 23 1 8.2213 -13.1486 -2.0368 24 6 6.5016 -14.3934 -2.3382 25 7 5.1996 -14.4259 -2.5133 26 14 7.4789 -15.9849 -2.3006 27 1 8.9167 -15.6780 -2.0909 28 1 6.9888 -16.8407 -1.1903 29 1 7.3083 -16.7013 -3.5901 30 6 7.3126 -5.9295 -2.3392 31 6 2.0585 -0.7549 -1.2372 32 1 -0.3633 -1.0274 0.0249 33 1 -0.3633 0.5352 0.8772 34 1 -0.3633 0.4921 -0.9023 35 1 2.6876 -0.0948 1.8319 36 1 1.2245 -1.1198 1.8323 37 1 2.2794 -2.8422 0.6562 38 1 3.7657 -2.1024 1.3296 39 1 2.7962 -3.4199 -1.5471 40 1 3.7639 -2.3901 -2.6295 41 1 4.8803 -4.8395 -2.4973 42 1 7.1213 -6.7468 0.1508 43 1 5.3332 -6.5489 -0.1032 44 1 7.9193 -8.4099 -2.5910 45 1 5.5358 -9.5511 -1.2852 46 1 5.7697 -9.4484 -3.0467 47 1 5.4729 -12.0313 -2.3375 48 1 4.7462 -15.2764 -2.6234 49 1 7.1132 -5.5795 -3.3519 50 1 8.3754 -6.0638 -2.1382 51 1 2.3289 -0.0526 -2.0258 52 1 1.3155 -1.4658 -1.5990 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566800721.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:16 Heat of formation + Delta-G solvation = -78.482270 kcal Electronic energy + Delta-G solvation = -28255.761172 eV Core-core repulsion = 24254.425807 eV Total energy + Delta-G solvation = -4001.335365 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.41 seconds Orbital eigenvalues (eV) -40.55175 -39.27973 -38.32447 -37.84791 -34.57453 -33.82405 -33.08323 -32.29810 -31.19649 -29.89211 -27.77955 -26.79614 -25.79002 -24.80908 -24.22399 -22.80423 -21.35556 -20.26202 -19.86397 -19.53852 -19.09790 -17.88857 -17.35819 -16.61744 -16.19868 -16.05025 -15.48083 -15.26552 -15.10053 -14.64503 -14.56510 -14.35007 -14.18725 -13.84532 -13.70563 -13.48700 -13.36379 -13.21555 -12.74808 -12.50573 -12.41733 -12.26847 -11.99383 -11.93420 -11.58934 -11.41676 -11.36340 -11.21685 -11.07493 -11.06435 -10.90418 -10.88734 -10.69853 -10.60960 -10.52719 -10.34776 -10.22672 -9.94597 -9.52844 -9.21418 -8.45162 -8.08465 -7.96686 -6.42673 -3.83417 2.43067 2.90041 3.15825 3.26473 3.33874 3.90088 4.10769 4.16741 4.20333 4.34511 4.36895 4.40182 4.47307 4.61959 4.75449 4.83996 4.88209 4.97285 5.06589 5.10406 5.18325 5.19371 5.21724 5.25642 5.26380 5.35525 5.39053 5.42974 5.55955 5.60140 5.64582 5.68104 5.71963 5.76946 5.78881 5.83335 5.88097 5.90859 6.02324 6.03949 6.09067 6.11614 6.15963 6.25656 6.46268 7.25497 7.28283 7.54690 7.65235 8.02909 8.05891 8.60423 9.17241 9.53567 10.04948 10.75147 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021916 B = 0.001537 C = 0.001474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.270523 B =18208.600935 C =18992.222029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 H 0.069 0.931 4 C -0.122 4.122 5 C -0.117 4.117 6 C -0.076 4.076 7 H 0.083 0.917 8 C -0.135 4.135 9 C 0.514 3.486 10 O -0.535 6.535 11 N -0.715 5.715 12 C 0.118 3.882 13 H 0.104 0.896 14 C -0.135 4.135 15 C 0.059 3.941 16 H 0.068 0.932 17 N -0.655 5.655 18 C 0.050 3.950 19 C 0.440 3.560 20 O -0.583 6.583 21 N -0.564 5.564 22 C -0.299 4.299 23 H 0.104 0.896 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.930 3.070 27 H -0.268 1.268 28 H -0.281 1.281 29 H -0.282 1.282 30 C -0.148 4.148 31 C -0.117 4.117 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.399 0.601 42 H 0.100 0.900 43 H 0.065 0.935 44 H 0.351 0.649 45 H 0.085 0.915 46 H 0.042 0.958 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.070 0.930 50 H 0.103 0.897 51 H 0.064 0.936 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.185 28.176 -0.166 29.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 H 0.087 0.913 4 C -0.160 4.160 5 C -0.155 4.155 6 C -0.095 4.095 7 H 0.101 0.899 8 C -0.175 4.175 9 C 0.301 3.699 10 O -0.412 6.412 11 N -0.366 5.366 12 C 0.012 3.988 13 H 0.122 0.878 14 C -0.175 4.175 15 C -0.051 4.051 16 H 0.086 0.914 17 N -0.288 5.288 18 C -0.083 4.083 19 C 0.226 3.774 20 O -0.467 6.467 21 N -0.201 5.201 22 C -0.429 4.429 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.544 5.544 26 Si 0.757 3.243 27 H -0.192 1.192 28 H -0.207 1.207 29 H -0.208 1.208 30 C -0.187 4.187 31 C -0.154 4.154 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.234 0.766 42 H 0.118 0.882 43 H 0.084 0.916 44 H 0.171 0.829 45 H 0.103 0.897 46 H 0.060 0.940 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.089 0.911 50 H 0.122 0.878 51 H 0.082 0.918 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.066 28.300 1.297 29.745 hybrid contribution -0.776 -1.158 -1.464 2.021 sum -9.842 27.143 -0.168 28.872 Atomic orbital electron populations 1.21888 0.95109 1.01771 1.01447 1.21726 0.95555 0.99364 0.94950 0.91251 1.22235 0.99342 0.97245 0.97139 1.22408 0.99699 0.97348 0.96031 1.21869 0.97909 0.95180 0.94528 0.89854 1.21727 0.95923 0.98505 1.01303 1.20725 0.86282 0.79875 0.83005 1.90694 1.59478 1.63965 1.27031 1.45780 1.27390 1.29266 1.34210 1.21754 0.86379 0.93943 0.96693 0.87802 1.23537 1.02837 0.93805 0.97303 1.23100 0.96181 0.88678 0.97158 0.91379 1.60217 1.12651 0.99688 1.56215 1.21732 0.95312 0.90985 1.00232 1.19832 0.88528 0.84632 0.84423 1.90522 1.14657 1.86892 1.54649 1.41876 1.10251 1.04761 1.63206 1.19763 0.94065 0.82691 1.46343 0.87854 1.25263 0.95815 0.99607 0.97283 1.69623 1.07772 1.27310 1.49651 0.85798 0.79811 0.81016 0.77706 1.19197 1.20739 1.20780 1.23607 1.00952 0.95570 0.98543 1.22527 0.96869 0.98843 0.97210 0.92588 0.92830 0.92852 0.91991 0.91859 0.92128 0.90519 0.88803 0.88908 0.76645 0.88182 0.91614 0.82906 0.89700 0.93960 0.77490 0.91939 0.91132 0.87837 0.91752 0.91341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 8.84 37.16 0.33 -0.44 16 2 C -0.10 -0.59 3.50 -89.50 -0.31 -0.90 16 3 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 4 C -0.12 -0.86 6.46 -25.61 -0.17 -1.02 16 5 C -0.12 -0.96 5.68 -25.07 -0.14 -1.11 16 6 C -0.08 -0.55 2.46 -88.63 -0.22 -0.77 16 7 H 0.08 0.72 7.97 -51.93 -0.41 0.31 16 8 C -0.13 -0.85 5.21 -27.88 -0.15 -0.99 16 9 C 0.51 4.88 7.64 -10.99 -0.08 4.80 16 10 O -0.54 -7.12 14.29 5.56 0.08 -7.04 16 11 N -0.72 -5.90 5.26 -53.02 -0.28 -6.18 16 12 C 0.12 1.17 4.32 -67.12 -0.29 0.88 16 13 H 0.10 1.18 7.47 -51.93 -0.39 0.79 16 14 C -0.14 -1.56 7.68 -25.93 -0.20 -1.76 16 15 C 0.06 0.68 4.02 -66.90 -0.27 0.41 16 16 H 0.07 0.71 7.87 -51.93 -0.41 0.30 16 17 N -0.66 -10.23 6.18 -107.13 -0.66 -10.89 16 18 C 0.05 0.87 6.01 -4.97 -0.03 0.84 16 19 C 0.44 10.38 7.82 -10.98 -0.09 10.29 16 20 O -0.58 -15.84 15.78 5.55 0.09 -15.76 16 21 N -0.56 -14.30 5.29 -10.96 -0.06 -14.36 16 22 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 23 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 24 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -24.51 13.05 55.50 0.72 -23.78 16 26 Si 0.93 21.04 29.55 -169.99 -5.02 16.02 16 27 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 28 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 29 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 30 C -0.15 -1.39 7.40 -25.92 -0.19 -1.59 16 31 C -0.12 -0.67 5.80 -25.07 -0.15 -0.82 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.42 7.67 -51.93 -0.40 0.02 16 37 H 0.06 0.49 7.99 -51.93 -0.41 0.07 16 38 H 0.08 0.80 7.22 -51.93 -0.38 0.42 16 39 H 0.09 0.48 8.05 -51.93 -0.42 0.06 16 40 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.40 2.34 8.70 -40.82 -0.36 1.99 16 42 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.35 5.61 8.25 -39.29 -0.32 5.29 16 45 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 46 H 0.04 0.65 8.13 -51.93 -0.42 0.23 16 47 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 48 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 49 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 50 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 51 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 52 H 0.07 0.36 7.77 -51.93 -0.40 -0.04 16 LS Contribution 416.90 15.07 6.28 6.28 Total: -1.00 -32.77 416.90 -10.27 -43.04 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: -9.23 Total: 12.87 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -2.19 Total: -0.19 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: -0.28 Total: -55.21 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: 0.17 Total: -22.80 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -32.77 -10.27 -43.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566800721.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.447 kcal (2) G-P(sol) polarization free energy of solvation -32.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.41 seconds