Wall clock time and date at job start Tue Mar 31 2020 22:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 110.54016 * 2 1 4 4 C 1.54891 * 110.48809 * 122.61408 * 2 1 3 5 5 C 1.54888 * 102.75120 * 156.61818 * 4 2 1 6 6 C 1.54261 * 104.19672 * 322.06034 * 5 4 2 7 7 H 1.08998 * 110.03492 * 264.32506 * 6 5 4 8 8 C 1.53003 * 110.03320 * 142.89314 * 6 5 4 9 9 C 1.50694 * 109.46851 * 67.83312 * 8 6 5 10 10 O 1.21277 * 120.00338 * 359.97438 * 9 8 6 11 11 N 1.34780 * 119.99474 * 179.97438 * 9 8 6 12 12 C 1.46505 * 119.99563 * 180.02562 * 11 9 8 13 13 H 1.08997 * 112.85107 * 25.33017 * 12 11 9 14 14 C 1.53780 * 113.61492 * 156.53213 * 12 11 9 15 15 C 1.53784 * 87.08238 * 89.11015 * 14 12 11 16 16 H 1.08996 * 113.61648 * 270.79751 * 15 14 12 17 17 N 1.46903 * 113.60983 * 139.98198 * 15 14 12 18 18 C 1.46902 * 110.99821 * 154.99978 * 17 15 14 19 19 C 1.50698 * 109.47112 * 179.97438 * 18 17 15 20 20 O 1.21288 * 119.99939 * 0.02562 * 19 18 17 21 21 N 1.34773 * 119.99954 * 180.02562 * 19 18 17 22 22 C 1.37095 * 120.00258 * 180.02562 * 21 19 18 23 23 H 1.08001 * 119.99593 * 359.97438 * 22 21 19 24 24 C 1.38951 * 120.00258 * 179.97438 * 22 21 19 25 25 N 1.31409 * 120.00100 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99854 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47378 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.47683 * 119.99921 * 26 24 22 29 29 H 1.48507 * 109.46958 * 239.99822 * 26 24 22 30 30 C 1.53787 * 113.61062 * 254.13589 * 12 11 9 31 31 C 1.53876 * 106.59990 * 23.60631 * 6 5 4 32 32 H 1.09000 * 109.47171 * 182.61458 * 1 2 3 33 33 H 1.09000 * 109.46838 * 302.61533 * 1 2 3 34 34 H 1.08996 * 109.46840 * 62.60915 * 1 2 3 35 35 H 1.09005 * 110.75269 * 38.30322 * 4 2 1 36 36 H 1.09004 * 110.91555 * 275.01137 * 4 2 1 37 37 H 1.09000 * 110.48622 * 203.37816 * 5 4 2 38 38 H 1.09001 * 110.59737 * 80.79460 * 5 4 2 39 39 H 1.09005 * 109.47034 * 187.83091 * 8 6 5 40 40 H 1.08991 * 109.46987 * 307.83035 * 8 6 5 41 41 H 0.96994 * 120.00250 * 359.97438 * 11 9 8 42 42 H 1.08993 * 113.62006 * 203.66471 * 14 12 11 43 43 H 1.08999 * 113.61155 * 334.47856 * 14 12 11 44 44 H 1.00903 * 111.00182 * 31.04982 * 17 15 14 45 45 H 1.08998 * 109.47325 * 300.00224 * 18 17 15 46 46 H 1.09005 * 109.46881 * 60.00091 * 18 17 15 47 47 H 0.97002 * 119.99951 * 359.97438 * 21 19 18 48 48 H 0.96996 * 119.99938 * 179.97438 * 25 24 22 49 49 H 1.08997 * 113.61513 * 25.43329 * 30 12 11 50 50 H 1.08998 * 113.61303 * 156.33760 * 30 12 11 51 51 H 1.08995 * 110.03160 * 119.28453 * 31 6 5 52 52 H 1.08998 * 110.03319 * 240.71542 * 31 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9125 1.0207 0.0000 4 6 2.0722 -0.7820 1.2222 5 6 3.4907 -1.1980 0.7600 6 6 3.3166 -1.5405 -0.7340 7 1 3.1692 -2.6135 -0.8564 8 6 4.5466 -1.0865 -1.5227 9 6 5.7347 -1.9247 -1.1266 10 8 5.6101 -2.7987 -0.2952 11 7 6.9358 -1.7029 -1.6965 12 6 8.0907 -2.5181 -1.3119 13 1 7.8080 -3.4992 -0.9304 14 6 9.1936 -2.5677 -2.3824 15 6 9.7878 -1.3158 -1.7157 16 1 9.3936 -0.3806 -2.1133 17 7 11.2548 -1.3299 -1.6395 18 6 11.7914 0.0358 -1.5690 19 6 13.2954 -0.0188 -1.4915 20 8 13.8643 -1.0900 -1.4953 21 7 14.0083 1.1226 -1.4181 22 6 15.3766 1.0729 -1.3481 23 1 15.8832 0.1191 -1.3515 24 6 16.1116 2.2497 -1.2730 25 7 15.4952 3.4103 -1.2694 26 14 17.9759 2.1820 -1.1784 27 1 18.4216 0.7656 -1.1993 28 1 18.5571 2.9014 -2.3403 29 1 18.4314 2.8253 0.0802 30 6 9.0979 -1.7761 -0.4175 31 6 2.0700 -0.7789 -1.2173 32 1 -0.3633 -1.0266 0.0469 33 1 -0.3633 0.5539 0.8656 34 1 -0.3633 0.4728 -0.9124 35 1 1.4580 -1.6601 1.4222 36 1 2.1251 -0.1409 2.1021 37 1 3.8316 -2.0723 1.3146 38 1 4.1916 -0.3723 0.8829 39 1 4.3581 -1.2048 -2.5898 40 1 4.7520 -0.0387 -1.3039 41 1 7.0353 -1.0041 -2.3618 42 1 9.8338 -3.4468 -2.3094 43 1 8.8280 -2.3933 -3.3943 44 1 11.6525 -1.8349 -2.4174 45 1 11.4929 0.5899 -2.4589 46 1 11.4002 0.5345 -0.6822 47 1 13.5533 1.9792 -1.4155 48 1 16.0083 4.2318 -1.2166 49 1 8.6554 -0.9617 0.1559 50 1 9.7120 -2.4393 0.1918 51 1 2.3412 -0.0858 -2.0135 52 1 1.3177 -1.4822 -1.5741 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566800723.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:33 Heat of formation + Delta-G solvation = -78.168935 kcal Electronic energy + Delta-G solvation = -28279.570943 eV Core-core repulsion = 24278.249166 eV Total energy + Delta-G solvation = -4001.321777 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.99 seconds Orbital eigenvalues (eV) -40.56678 -39.29270 -38.30869 -37.82831 -34.57440 -33.82281 -33.06738 -32.30248 -31.19729 -29.94699 -27.72179 -26.78240 -25.79104 -24.79298 -24.21349 -22.78700 -21.29761 -20.55292 -19.72801 -19.51174 -19.09966 -17.89079 -17.49391 -16.55327 -16.10682 -15.82179 -15.65201 -15.28621 -14.98590 -14.90605 -14.60536 -14.24477 -13.98535 -13.90085 -13.64423 -13.51882 -13.35737 -13.30112 -12.91838 -12.49067 -12.40666 -12.12418 -11.97859 -11.92789 -11.58912 -11.42353 -11.37504 -11.15146 -11.09840 -11.06454 -11.01038 -10.83962 -10.70615 -10.60999 -10.53286 -10.34762 -10.22674 -9.94897 -9.52806 -9.21377 -8.45055 -8.08361 -7.96679 -6.42645 -3.83380 2.43436 2.90615 3.15836 3.26495 3.33899 3.90103 4.10797 4.17265 4.21096 4.33923 4.36779 4.39792 4.47049 4.63460 4.70621 4.80115 4.87124 4.97251 5.10768 5.13008 5.16815 5.19482 5.23187 5.25890 5.27696 5.32183 5.41694 5.49901 5.50779 5.61394 5.62433 5.69696 5.72093 5.77017 5.79407 5.80863 5.87853 5.90724 6.02533 6.03889 6.07022 6.10033 6.17626 6.25676 6.46280 7.25539 7.28342 7.54718 7.65227 8.03045 8.05925 8.60456 9.17276 9.53594 10.04994 10.75203 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021466 B = 0.001550 C = 0.001483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.074135 B =18057.132152 C =18871.712602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.099 4.099 3 H 0.073 0.927 4 C -0.123 4.123 5 C -0.114 4.114 6 C -0.076 4.076 7 H 0.079 0.921 8 C -0.136 4.136 9 C 0.514 3.486 10 O -0.535 6.535 11 N -0.715 5.715 12 C 0.118 3.882 13 H 0.103 0.897 14 C -0.148 4.148 15 C 0.060 3.940 16 H 0.068 0.932 17 N -0.655 5.655 18 C 0.050 3.950 19 C 0.440 3.560 20 O -0.583 6.583 21 N -0.564 5.564 22 C -0.299 4.299 23 H 0.104 0.896 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.930 3.070 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.281 1.281 30 C -0.135 4.135 31 C -0.118 4.118 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.399 0.601 42 H 0.103 0.897 43 H 0.070 0.930 44 H 0.350 0.650 45 H 0.042 0.958 46 H 0.085 0.915 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.065 0.935 50 H 0.100 0.900 51 H 0.064 0.936 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.513 -4.883 -2.181 29.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 H 0.091 0.909 4 C -0.160 4.160 5 C -0.152 4.152 6 C -0.095 4.095 7 H 0.098 0.902 8 C -0.176 4.176 9 C 0.300 3.700 10 O -0.411 6.411 11 N -0.367 5.367 12 C 0.013 3.987 13 H 0.121 0.879 14 C -0.186 4.186 15 C -0.051 4.051 16 H 0.086 0.914 17 N -0.288 5.288 18 C -0.083 4.083 19 C 0.226 3.774 20 O -0.467 6.467 21 N -0.201 5.201 22 C -0.429 4.429 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.544 5.544 26 Si 0.757 3.243 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.207 1.207 30 C -0.175 4.175 31 C -0.155 4.155 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.110 0.890 40 H 0.112 0.888 41 H 0.233 0.767 42 H 0.122 0.878 43 H 0.089 0.911 44 H 0.171 0.829 45 H 0.060 0.940 46 H 0.103 0.897 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.084 0.916 50 H 0.118 0.882 51 H 0.083 0.917 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -29.104 -6.149 -0.902 29.760 hybrid contribution 0.710 1.481 -1.244 2.060 sum -28.394 -4.668 -2.146 28.855 Atomic orbital electron populations 1.21809 0.95150 1.01746 1.01502 1.21977 0.95330 0.99281 0.95111 0.90886 1.22602 0.96522 0.99641 0.97244 1.22381 0.96305 1.01449 0.95019 1.21523 0.92330 1.00609 0.95020 0.90233 1.21881 0.93319 1.00405 1.01952 1.20743 0.83972 0.84208 0.81049 1.90698 1.84760 1.33241 1.32426 1.45785 1.08736 1.38020 1.44131 1.21749 0.84514 0.95727 0.96751 0.87894 1.23595 0.97260 0.99834 0.97948 1.23147 0.88531 0.96538 0.96882 0.91374 1.60214 1.03122 1.14772 1.50668 1.21732 0.95096 0.90398 1.01034 1.19828 0.88031 0.85078 0.84479 1.90522 1.71609 1.29089 1.55505 1.41875 1.07160 1.06881 1.64171 1.19764 0.81222 0.94667 1.47213 0.87855 1.25262 1.00731 0.94629 0.97336 1.69618 1.36565 0.97526 1.50644 0.85798 0.82223 0.78602 0.77712 1.19197 1.20782 1.20738 1.23581 0.96441 1.00551 0.96886 1.22318 0.96776 0.98780 0.97649 0.92654 0.92776 0.92813 0.91544 0.91782 0.90777 0.92053 0.89002 0.88806 0.76657 0.87831 0.91129 0.82908 0.93962 0.89701 0.77492 0.91936 0.91612 0.88196 0.91710 0.91582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.75 9.12 37.16 0.34 -0.41 16 2 C -0.10 -0.58 3.46 -88.96 -0.31 -0.89 16 3 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 4 C -0.12 -0.84 6.33 -24.74 -0.16 -1.00 16 5 C -0.11 -0.94 5.43 -25.08 -0.14 -1.08 16 6 C -0.08 -0.55 2.55 -89.50 -0.23 -0.78 16 7 H 0.08 0.69 7.93 -51.93 -0.41 0.28 16 8 C -0.14 -0.86 4.83 -27.88 -0.13 -1.00 16 9 C 0.51 4.91 7.61 -10.99 -0.08 4.82 16 10 O -0.54 -7.15 14.44 5.56 0.08 -7.07 16 11 N -0.72 -5.94 5.26 -53.01 -0.28 -6.22 16 12 C 0.12 1.18 4.30 -67.11 -0.29 0.89 16 13 H 0.10 1.17 7.50 -51.93 -0.39 0.78 16 14 C -0.15 -1.39 7.39 -25.92 -0.19 -1.58 16 15 C 0.06 0.69 4.03 -66.75 -0.27 0.42 16 16 H 0.07 0.71 7.87 -51.93 -0.41 0.31 16 17 N -0.66 -10.25 6.19 -106.98 -0.66 -10.91 16 18 C 0.05 0.87 6.01 -4.98 -0.03 0.84 16 19 C 0.44 10.39 7.82 -10.99 -0.09 10.30 16 20 O -0.58 -15.86 15.78 5.55 0.09 -15.77 16 21 N -0.56 -14.31 5.29 -10.97 -0.06 -14.37 16 22 C -0.30 -8.36 9.68 -14.93 -0.14 -8.51 16 23 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -24.52 13.05 55.50 0.72 -23.79 16 26 Si 0.93 21.05 29.55 -169.99 -5.02 16.02 16 27 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 28 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 29 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 30 C -0.13 -1.57 7.70 -25.77 -0.20 -1.77 16 31 C -0.12 -0.68 6.03 -25.61 -0.15 -0.83 16 32 H 0.05 0.29 8.12 -51.93 -0.42 -0.14 16 33 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.07 0.45 8.04 -51.93 -0.42 0.04 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.76 7.66 -51.93 -0.40 0.36 16 38 H 0.06 0.52 7.76 -51.93 -0.40 0.12 16 39 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.09 0.49 8.00 -51.93 -0.42 0.07 16 41 H 0.40 2.36 8.70 -40.82 -0.36 2.01 16 42 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.35 5.62 8.25 -39.29 -0.32 5.29 16 45 H 0.04 0.66 8.13 -51.93 -0.42 0.23 16 46 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 47 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 48 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 49 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 50 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 51 H 0.06 0.32 7.67 -51.93 -0.40 -0.08 16 52 H 0.07 0.37 7.84 -51.93 -0.41 -0.04 16 LS Contribution 416.91 15.07 6.28 6.28 Total: -1.00 -32.78 416.91 -10.25 -43.02 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: -9.23 Total: 12.88 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -2.17 Total: -0.08 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: -0.27 Total: -55.29 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: 0.17 Total: -22.84 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -32.78 -10.25 -43.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566800723.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.146 kcal (2) G-P(sol) polarization free energy of solvation -32.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.99 seconds