Wall clock time and date at job start Tue Mar 31 2020 22:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 110.54016 * 2 1 4 4 C 1.54891 * 110.48809 * 122.61408 * 2 1 3 5 5 C 1.54888 * 102.75120 * 156.61818 * 4 2 1 6 6 C 1.54261 * 104.19672 * 322.06034 * 5 4 2 7 7 H 1.08998 * 110.03492 * 264.32506 * 6 5 4 8 8 C 1.53003 * 110.03320 * 142.89314 * 6 5 4 9 9 C 1.50694 * 109.46851 * 67.83312 * 8 6 5 10 10 O 1.21277 * 120.00338 * 359.97438 * 9 8 6 11 11 N 1.34780 * 119.99474 * 179.97438 * 9 8 6 12 12 C 1.46505 * 119.99563 * 180.02562 * 11 9 8 13 13 H 1.08997 * 112.85107 * 25.33017 * 12 11 9 14 14 C 1.53780 * 113.61492 * 156.53213 * 12 11 9 15 15 C 1.53784 * 87.08238 * 89.11015 * 14 12 11 16 16 H 1.08996 * 113.61648 * 270.79751 * 15 14 12 17 17 N 1.46903 * 113.60983 * 139.98198 * 15 14 12 18 18 C 1.46902 * 110.99821 * 154.99978 * 17 15 14 19 19 C 1.50698 * 109.47112 * 179.97438 * 18 17 15 20 20 O 1.21288 * 119.99939 * 0.02562 * 19 18 17 21 21 N 1.34773 * 119.99954 * 180.02562 * 19 18 17 22 22 C 1.37095 * 120.00258 * 180.02562 * 21 19 18 23 23 H 1.08001 * 119.99593 * 359.97438 * 22 21 19 24 24 C 1.38951 * 120.00258 * 179.97438 * 22 21 19 25 25 N 1.31409 * 120.00100 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99854 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47378 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.47683 * 119.99921 * 26 24 22 29 29 H 1.48507 * 109.46958 * 239.99822 * 26 24 22 30 30 C 1.53787 * 113.61062 * 254.13589 * 12 11 9 31 31 C 1.53876 * 106.59990 * 23.60631 * 6 5 4 32 32 H 1.09000 * 109.47171 * 182.61458 * 1 2 3 33 33 H 1.09000 * 109.46838 * 302.61533 * 1 2 3 34 34 H 1.08996 * 109.46840 * 62.60915 * 1 2 3 35 35 H 1.09005 * 110.75269 * 38.30322 * 4 2 1 36 36 H 1.09004 * 110.91555 * 275.01137 * 4 2 1 37 37 H 1.09000 * 110.48622 * 203.37816 * 5 4 2 38 38 H 1.09001 * 110.59737 * 80.79460 * 5 4 2 39 39 H 1.09005 * 109.47034 * 187.83091 * 8 6 5 40 40 H 1.08991 * 109.46987 * 307.83035 * 8 6 5 41 41 H 0.96994 * 120.00250 * 359.97438 * 11 9 8 42 42 H 1.08993 * 113.62006 * 203.66471 * 14 12 11 43 43 H 1.08999 * 113.61155 * 334.47856 * 14 12 11 44 44 H 1.00903 * 111.00182 * 31.04982 * 17 15 14 45 45 H 1.08998 * 109.47325 * 300.00224 * 18 17 15 46 46 H 1.09005 * 109.46881 * 60.00091 * 18 17 15 47 47 H 0.97002 * 119.99951 * 359.97438 * 21 19 18 48 48 H 0.96996 * 119.99938 * 179.97438 * 25 24 22 49 49 H 1.08997 * 113.61513 * 25.43329 * 30 12 11 50 50 H 1.08998 * 113.61303 * 156.33760 * 30 12 11 51 51 H 1.08995 * 110.03160 * 119.28453 * 31 6 5 52 52 H 1.08998 * 110.03319 * 240.71542 * 31 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9125 1.0207 0.0000 4 6 2.0722 -0.7820 1.2222 5 6 3.4907 -1.1980 0.7600 6 6 3.3166 -1.5405 -0.7340 7 1 3.1692 -2.6135 -0.8564 8 6 4.5466 -1.0865 -1.5227 9 6 5.7347 -1.9247 -1.1266 10 8 5.6101 -2.7987 -0.2952 11 7 6.9358 -1.7029 -1.6965 12 6 8.0907 -2.5181 -1.3119 13 1 7.8080 -3.4992 -0.9304 14 6 9.1936 -2.5677 -2.3824 15 6 9.7878 -1.3158 -1.7157 16 1 9.3936 -0.3806 -2.1133 17 7 11.2548 -1.3299 -1.6395 18 6 11.7914 0.0358 -1.5690 19 6 13.2954 -0.0188 -1.4915 20 8 13.8643 -1.0900 -1.4953 21 7 14.0083 1.1226 -1.4181 22 6 15.3766 1.0729 -1.3481 23 1 15.8832 0.1191 -1.3515 24 6 16.1116 2.2497 -1.2730 25 7 15.4952 3.4103 -1.2694 26 14 17.9759 2.1820 -1.1784 27 1 18.4216 0.7656 -1.1993 28 1 18.5571 2.9014 -2.3403 29 1 18.4314 2.8253 0.0802 30 6 9.0979 -1.7761 -0.4175 31 6 2.0700 -0.7789 -1.2173 32 1 -0.3633 -1.0266 0.0469 33 1 -0.3633 0.5539 0.8656 34 1 -0.3633 0.4728 -0.9124 35 1 1.4580 -1.6601 1.4222 36 1 2.1251 -0.1409 2.1021 37 1 3.8316 -2.0723 1.3146 38 1 4.1916 -0.3723 0.8829 39 1 4.3581 -1.2048 -2.5898 40 1 4.7520 -0.0387 -1.3039 41 1 7.0353 -1.0041 -2.3618 42 1 9.8338 -3.4468 -2.3094 43 1 8.8280 -2.3933 -3.3943 44 1 11.6525 -1.8349 -2.4174 45 1 11.4929 0.5899 -2.4589 46 1 11.4002 0.5345 -0.6822 47 1 13.5533 1.9792 -1.4155 48 1 16.0083 4.2318 -1.2166 49 1 8.6554 -0.9617 0.1559 50 1 9.7120 -2.4393 0.1918 51 1 2.3412 -0.0858 -2.0135 52 1 1.3177 -1.4822 -1.5741 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566800723.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:30 Heat of formation + Delta-G solvation = -100.985836 kcal Electronic energy + Delta-G solvation = -28280.560358 eV Core-core repulsion = 24278.249166 eV Total energy + Delta-G solvation = -4002.311192 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.35870 -40.28545 -39.75001 -38.73531 -36.13204 -35.37496 -33.80684 -33.30363 -33.04559 -30.50704 -28.64675 -27.95105 -26.69628 -26.12469 -25.14781 -23.82086 -22.02829 -21.17132 -21.06624 -20.36752 -20.11692 -19.88089 -18.23867 -17.83619 -17.16161 -16.86990 -16.50207 -16.40231 -16.27324 -16.04916 -15.68307 -15.59965 -15.37513 -14.92693 -14.46037 -14.42722 -14.22172 -14.04577 -13.76189 -13.53155 -13.49606 -13.26958 -13.25858 -12.99825 -12.88247 -12.59165 -12.54584 -12.40311 -12.11566 -11.97129 -11.65858 -11.62491 -11.53716 -11.52619 -11.49146 -11.44947 -11.42033 -11.21054 -10.72323 -10.33647 -10.01921 -10.00426 -9.29997 -8.47347 -5.96005 1.36420 1.41975 1.56083 1.70470 2.04917 2.21023 2.29153 2.96457 3.20181 3.48542 3.57341 3.62235 3.68059 3.68663 3.80793 3.98056 4.04338 4.13813 4.22743 4.30355 4.37097 4.47348 4.57681 4.58938 4.59268 4.62917 4.68598 4.76275 4.79641 4.81763 4.86725 4.87977 4.98433 5.01842 5.04692 5.09660 5.14258 5.15512 5.20915 5.24549 5.37616 5.40857 5.41591 5.58582 5.61086 5.62495 5.93548 6.17106 6.44175 6.59835 6.62417 7.12404 7.34299 7.55950 8.11363 8.70245 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021466 B = 0.001550 C = 0.001483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.074135 B =18057.132152 C =18871.712602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.097 4.097 3 H 0.077 0.923 4 C -0.122 4.122 5 C -0.115 4.115 6 C -0.076 4.076 7 H 0.059 0.941 8 C -0.128 4.128 9 C 0.509 3.491 10 O -0.580 6.580 11 N -0.704 5.704 12 C 0.127 3.873 13 H 0.086 0.914 14 C -0.133 4.133 15 C 0.062 3.938 16 H 0.091 0.909 17 N -0.673 5.673 18 C 0.066 3.934 19 C 0.436 3.564 20 O -0.624 6.624 21 N -0.573 5.573 22 C -0.335 4.335 23 H 0.078 0.922 24 C -0.012 4.012 25 N -0.920 5.920 26 Si 0.993 3.007 27 H -0.274 1.274 28 H -0.270 1.270 29 H -0.272 1.272 30 C -0.139 4.139 31 C -0.112 4.112 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.044 0.956 38 H 0.058 0.942 39 H 0.119 0.881 40 H 0.113 0.887 41 H 0.415 0.585 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.347 0.653 45 H 0.071 0.929 46 H 0.098 0.902 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.062 0.938 50 H 0.080 0.920 51 H 0.082 0.918 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.771 -3.263 -3.772 31.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 H 0.096 0.904 4 C -0.160 4.160 5 C -0.152 4.152 6 C -0.095 4.095 7 H 0.078 0.922 8 C -0.168 4.168 9 C 0.297 3.703 10 O -0.460 6.460 11 N -0.356 5.356 12 C 0.020 3.980 13 H 0.104 0.896 14 C -0.171 4.171 15 C -0.048 4.048 16 H 0.109 0.891 17 N -0.305 5.305 18 C -0.066 4.066 19 C 0.224 3.776 20 O -0.511 6.511 21 N -0.210 5.210 22 C -0.464 4.464 23 H 0.096 0.904 24 C -0.212 4.212 25 N -0.561 5.561 26 Si 0.816 3.184 27 H -0.199 1.199 28 H -0.195 1.195 29 H -0.197 1.197 30 C -0.179 4.179 31 C -0.149 4.149 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.063 0.937 38 H 0.077 0.923 39 H 0.137 0.863 40 H 0.131 0.869 41 H 0.252 0.748 42 H 0.116 0.884 43 H 0.113 0.887 44 H 0.167 0.833 45 H 0.089 0.911 46 H 0.116 0.884 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.081 0.919 50 H 0.098 0.902 51 H 0.101 0.899 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -30.392 -4.488 -2.517 30.824 hybrid contribution 1.067 0.926 -0.694 1.575 sum -29.324 -3.562 -3.211 29.714 Atomic orbital electron populations 1.21796 0.94531 1.01755 1.02000 1.21978 0.95838 0.99257 0.94436 0.90414 1.22599 0.95652 0.99729 0.97999 1.22336 0.96998 1.00063 0.95845 1.21488 0.93787 0.99764 0.94436 0.92226 1.21916 0.91072 1.00511 1.03256 1.21383 0.84903 0.83807 0.80201 1.90693 1.85453 1.35338 1.34494 1.45679 1.07861 1.37962 1.44077 1.21522 0.84913 0.95012 0.96569 0.89622 1.23487 0.96244 0.98509 0.98863 1.23264 0.85955 0.98465 0.97122 0.89126 1.60176 1.05569 1.13733 1.51046 1.21581 0.90132 0.92038 1.02887 1.20944 0.90649 0.83834 0.82189 1.90491 1.73304 1.30483 1.56795 1.41940 1.06599 1.07680 1.64828 1.19709 0.82810 0.94228 1.49683 0.90394 1.26025 1.04915 0.93976 0.96261 1.69671 1.38166 0.97960 1.50283 0.84875 0.76904 0.78253 0.78330 1.19853 1.19467 1.19695 1.23556 0.96914 1.00349 0.97089 1.22286 0.95838 0.98883 0.97917 0.92881 0.92674 0.91970 0.91954 0.91697 0.93679 0.92283 0.86255 0.86856 0.74777 0.88435 0.88688 0.83277 0.91109 0.88413 0.76958 0.91292 0.91931 0.90170 0.89933 0.91374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.12 71.98 0.66 -0.59 16 2 C -0.10 -0.98 3.46 -9.72 -0.03 -1.01 16 3 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 4 C -0.12 -1.64 6.33 31.89 0.20 -1.43 16 5 C -0.11 -1.92 5.43 31.67 0.17 -1.75 16 6 C -0.08 -1.03 2.55 -10.07 -0.03 -1.05 16 7 H 0.06 1.05 7.93 -2.39 -0.02 1.03 16 8 C -0.13 -1.32 4.83 29.85 0.14 -1.18 16 9 C 0.51 9.11 7.61 87.65 0.67 9.78 16 10 O -0.58 -15.84 14.44 -3.02 -0.04 -15.88 16 11 N -0.70 -10.20 5.26 -440.03 -2.32 -12.51 16 12 C 0.13 2.39 4.30 45.52 0.20 2.59 16 13 H 0.09 1.97 7.50 -2.39 -0.02 1.96 16 14 C -0.13 -2.23 7.39 31.12 0.23 -2.00 16 15 C 0.06 1.29 4.03 45.53 0.18 1.47 16 16 H 0.09 1.55 7.87 -2.39 -0.02 1.53 16 17 N -0.67 -20.24 6.19 -492.37 -3.05 -23.29 16 18 C 0.07 2.20 6.01 85.56 0.51 2.71 16 19 C 0.44 20.66 7.82 87.66 0.69 21.35 16 20 O -0.62 -34.68 15.78 -3.05 -0.05 -34.73 16 21 N -0.57 -29.33 5.29 -306.99 -1.62 -30.96 16 22 C -0.33 -19.06 9.68 84.04 0.81 -18.25 16 23 H 0.08 4.76 7.16 -2.91 -0.02 4.73 16 24 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 25 N -0.92 -49.37 13.05 21.66 0.28 -49.09 16 26 Si 0.99 42.89 29.55 68.60 2.03 44.91 16 27 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 28 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 29 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 30 C -0.14 -3.15 7.70 31.21 0.24 -2.91 16 31 C -0.11 -1.04 6.03 31.32 0.19 -0.85 16 32 H 0.05 0.48 8.12 -2.39 -0.02 0.46 16 33 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.06 0.87 8.04 -2.38 -0.02 0.85 16 36 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 37 H 0.04 1.00 7.66 -2.39 -0.02 0.98 16 38 H 0.06 0.98 7.76 -2.39 -0.02 0.97 16 39 H 0.12 0.63 8.14 -2.38 -0.02 0.61 16 40 H 0.11 0.79 8.00 -2.39 -0.02 0.77 16 41 H 0.42 3.44 8.70 -92.71 -0.81 2.63 16 42 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.35 10.83 8.25 -89.69 -0.74 10.09 16 45 H 0.07 1.98 8.13 -2.39 -0.02 1.96 16 46 H 0.10 3.03 8.14 -2.38 -0.02 3.01 16 47 H 0.40 19.17 7.90 -92.71 -0.73 18.43 16 48 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 49 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 50 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 51 H 0.08 0.51 7.67 -2.39 -0.02 0.49 16 52 H 0.07 0.63 7.84 -2.39 -0.02 0.61 16 Total: -1.00 -73.12 416.91 -0.82 -73.94 By element: Atomic # 1 Polarization: 42.25 SS G_CDS: -1.35 Total: 40.90 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: 5.30 Total: 6.71 kcal Atomic # 7 Polarization: -109.15 SS G_CDS: -6.70 Total: -115.85 kcal Atomic # 8 Polarization: -50.52 SS G_CDS: -0.09 Total: -50.61 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Total: -73.12 -0.82 -73.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566800723.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.046 kcal (2) G-P(sol) polarization free energy of solvation -73.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds