Wall clock time and date at job start Tue Mar 31 2020 22:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09001 * 110.43084 * 2 1 4 4 C 1.54265 * 110.48632 * 122.53420 * 2 1 3 5 5 C 1.53873 * 106.59795 * 142.42294 * 4 2 1 6 6 C 1.54268 * 106.59674 * 0.02562 * 5 4 2 7 7 H 1.09000 * 110.48959 * 95.20178 * 6 5 4 8 8 C 1.53001 * 110.48470 * 217.71129 * 6 5 4 9 9 C 1.50704 * 109.47081 * 291.75673 * 8 6 5 10 10 O 1.21278 * 120.00010 * 0.02562 * 9 8 6 11 11 N 1.34776 * 119.99615 * 179.97438 * 9 8 6 12 12 C 1.46507 * 119.99745 * 179.97438 * 11 9 8 13 13 H 1.08997 * 112.84885 * 336.20259 * 12 11 9 14 14 C 1.53959 * 113.66338 * 107.44316 * 12 11 9 15 15 C 1.53776 * 87.01880 * 139.93329 * 14 12 11 16 16 H 1.09007 * 113.61307 * 89.22349 * 15 14 12 17 17 N 1.46895 * 113.61931 * 220.04440 * 15 14 12 18 18 C 1.46893 * 111.00318 * 254.13962 * 17 15 14 19 19 C 1.50708 * 109.47146 * 179.97438 * 18 17 15 20 20 O 1.21288 * 119.99815 * 359.97438 * 19 18 17 21 21 N 1.34774 * 119.99719 * 180.02562 * 19 18 17 22 22 C 1.37101 * 119.99349 * 180.02562 * 21 19 18 23 23 H 1.07991 * 120.00515 * 359.97438 * 22 21 19 24 24 C 1.38955 * 119.99490 * 179.97438 * 22 21 19 25 25 N 1.31413 * 120.00236 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99845 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47187 * 179.97438 * 26 24 22 28 28 H 1.48502 * 109.47194 * 300.00675 * 26 24 22 29 29 H 1.48498 * 109.47018 * 60.00238 * 26 24 22 30 30 C 1.53777 * 113.61401 * 205.00120 * 12 11 9 31 31 C 1.54883 * 104.31486 * 336.45359 * 6 5 4 32 32 H 1.08997 * 109.46902 * 298.91430 * 1 2 3 33 33 H 1.08995 * 109.46884 * 58.92028 * 1 2 3 34 34 H 1.09001 * 109.46722 * 178.91612 * 1 2 3 35 35 H 1.09008 * 110.03340 * 23.14053 * 4 2 1 36 36 H 1.09003 * 110.03686 * 261.70980 * 4 2 1 37 37 H 1.08998 * 110.03158 * 240.71688 * 5 4 2 38 38 H 1.08993 * 110.07416 * 119.30606 * 5 4 2 39 39 H 1.09001 * 109.47098 * 171.75595 * 8 6 5 40 40 H 1.09004 * 109.47267 * 51.75776 * 8 6 5 41 41 H 0.97002 * 120.00475 * 0.02562 * 11 9 8 42 42 H 1.08997 * 113.61092 * 25.41107 * 14 12 11 43 43 H 1.08998 * 113.66271 * 254.46111 * 14 12 11 44 44 H 1.00899 * 111.00063 * 130.18138 * 17 15 14 45 45 H 1.09002 * 109.47091 * 59.99845 * 18 17 15 46 46 H 1.09000 * 109.47343 * 299.99463 * 18 17 15 47 47 H 0.96996 * 120.00564 * 359.97438 * 21 19 18 48 48 H 0.97001 * 119.99781 * 179.97438 * 25 24 22 49 49 H 1.09001 * 113.61120 * 105.47656 * 30 12 11 50 50 H 1.09000 * 113.69525 * 334.58054 * 30 12 11 51 51 H 1.08999 * 110.76220 * 156.18809 * 31 6 5 52 52 H 1.09000 * 110.76018 * 279.56532 * 31 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0700 -0.7772 1.2183 5 6 3.3186 -1.5368 0.7370 6 6 3.4942 -1.1941 -0.7569 7 1 4.1938 -0.3673 -0.8790 8 6 3.9759 -2.4206 -1.5345 9 6 5.3845 -2.7579 -1.1183 10 8 5.9475 -2.0840 -0.2818 11 7 6.0181 -3.8091 -1.6751 12 6 7.3877 -4.1367 -1.2710 13 1 7.9244 -3.2809 -0.8615 14 6 7.4890 -5.4023 -0.4001 15 6 8.7576 -5.7512 -1.1962 16 1 9.6703 -5.3382 -0.7663 17 7 8.8751 -7.1791 -1.5201 18 6 9.8940 -7.8268 -0.6834 19 6 9.9853 -9.2874 -1.0432 20 8 9.2714 -9.7440 -1.9110 21 7 10.8595 -10.0865 -0.4000 22 6 10.9429 -11.4151 -0.7277 23 1 10.3078 -11.8215 -1.5009 24 6 11.8445 -12.2388 -0.0649 25 7 12.6176 -11.7443 0.8756 26 14 11.9577 -14.0493 -0.5109 27 1 12.9882 -14.7039 0.3345 28 1 10.6422 -14.6989 -0.2811 29 1 12.3331 -14.1842 -1.9413 30 6 8.1791 -4.9049 -2.3425 31 6 2.0770 -0.7786 -1.2236 32 1 -0.3633 0.4969 0.8995 33 1 -0.3633 0.5305 -0.8801 34 1 -0.3633 -1.0275 -0.0194 35 1 1.3185 -1.4819 1.5746 36 1 2.3390 -0.0832 2.0147 37 1 3.1731 -2.6100 0.8597 38 1 4.1939 -1.2122 1.2995 39 1 3.9544 -2.2050 -2.6028 40 1 3.3217 -3.2660 -1.3213 41 1 5.5677 -4.3483 -2.3439 42 1 6.6700 -6.1048 -0.5540 43 1 7.6778 -5.1947 0.6531 44 1 9.0740 -7.3124 -2.5003 45 1 9.6183 -7.7281 0.3666 46 1 10.8595 -7.3497 -0.8519 47 1 11.4301 -9.7214 0.2943 48 1 13.2468 -12.3194 1.3385 49 1 8.9242 -4.2964 -2.8551 50 1 7.5503 -5.4716 -3.0293 51 1 2.1326 -0.1342 -2.1010 52 1 1.4640 -1.6568 -1.4263 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566848287.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:40 Heat of formation + Delta-G solvation = -80.665837 kcal Electronic energy + Delta-G solvation = -28085.204537 eV Core-core repulsion = 24083.774485 eV Total energy + Delta-G solvation = -4001.430051 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.44418 -39.22898 -38.30517 -37.82560 -34.59670 -33.84336 -33.07504 -32.37461 -31.18966 -29.92789 -27.78657 -26.76573 -25.79161 -24.80268 -24.14120 -22.66443 -20.84567 -20.45489 -20.11146 -19.53430 -19.10957 -17.87771 -17.16713 -16.82322 -16.42870 -15.85000 -15.40430 -15.37969 -15.13028 -14.63232 -14.48848 -14.37336 -14.09083 -13.73491 -13.69520 -13.40875 -13.37330 -13.19694 -12.73378 -12.50883 -12.42424 -12.25225 -11.98022 -11.75418 -11.55529 -11.40692 -11.25368 -11.20078 -11.10528 -11.00196 -10.95675 -10.94342 -10.86987 -10.64394 -10.59664 -10.44290 -10.21162 -9.87145 -9.50027 -9.14917 -8.44836 -8.08145 -7.95893 -6.41482 -3.82471 2.46713 2.98939 3.20097 3.25839 3.30192 3.91194 4.11716 4.18656 4.20687 4.33623 4.39687 4.43429 4.47865 4.66042 4.77183 4.84057 4.88658 4.90432 5.05863 5.12405 5.20609 5.21805 5.24754 5.25495 5.26572 5.37043 5.39910 5.46366 5.55226 5.57470 5.61498 5.68907 5.70796 5.79882 5.80362 5.84331 5.87365 5.96911 5.99887 6.04363 6.09695 6.13847 6.18425 6.28670 6.45633 7.25281 7.34635 7.55002 7.65355 8.06216 8.06621 8.61407 9.17783 9.54508 10.05917 10.76139 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.027934 B = 0.001434 C = 0.001416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.116879 B =19518.818629 C =19773.264993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.072 0.928 4 C -0.122 4.122 5 C -0.115 4.115 6 C -0.075 4.075 7 H 0.081 0.919 8 C -0.136 4.136 9 C 0.512 3.488 10 O -0.539 6.539 11 N -0.719 5.719 12 C 0.122 3.878 13 H 0.113 0.887 14 C -0.136 4.136 15 C 0.062 3.938 16 H 0.074 0.926 17 N -0.654 5.654 18 C 0.049 3.951 19 C 0.440 3.560 20 O -0.585 6.585 21 N -0.563 5.563 22 C -0.301 4.301 23 H 0.102 0.898 24 C 0.023 3.977 25 N -0.902 5.902 26 Si 0.931 3.069 27 H -0.284 1.284 28 H -0.273 1.273 29 H -0.274 1.274 30 C -0.148 4.148 31 C -0.117 4.117 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.401 0.599 42 H 0.093 0.907 43 H 0.067 0.933 44 H 0.350 0.650 45 H 0.086 0.914 46 H 0.044 0.956 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.072 0.928 50 H 0.094 0.906 51 H 0.065 0.935 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.371 24.257 -3.344 30.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 H 0.091 0.909 4 C -0.160 4.160 5 C -0.152 4.152 6 C -0.094 4.094 7 H 0.100 0.900 8 C -0.176 4.176 9 C 0.299 3.701 10 O -0.416 6.416 11 N -0.370 5.370 12 C 0.016 3.984 13 H 0.131 0.869 14 C -0.176 4.176 15 C -0.049 4.049 16 H 0.092 0.908 17 N -0.287 5.287 18 C -0.083 4.083 19 C 0.226 3.774 20 O -0.469 6.469 21 N -0.200 5.200 22 C -0.431 4.431 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.758 3.242 27 H -0.210 1.210 28 H -0.199 1.199 29 H -0.199 1.199 30 C -0.186 4.186 31 C -0.154 4.154 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.110 0.890 40 H 0.112 0.888 41 H 0.236 0.764 42 H 0.112 0.888 43 H 0.086 0.914 44 H 0.170 0.830 45 H 0.104 0.896 46 H 0.062 0.938 47 H 0.226 0.774 48 H 0.082 0.918 49 H 0.091 0.909 50 H 0.113 0.887 51 H 0.084 0.916 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -18.802 24.139 -2.793 30.725 hybrid contribution 1.180 -0.752 -0.382 1.450 sum -17.623 23.387 -3.174 29.455 Atomic orbital electron populations 1.21806 0.95086 1.01775 1.01500 1.21969 0.95314 0.99318 0.95031 0.90950 1.22244 0.97420 0.98858 0.97453 1.22148 0.97849 0.99858 0.95376 1.21732 0.96349 0.96518 0.94823 0.90046 1.21792 0.93617 1.00193 1.01994 1.20759 0.88362 0.79831 0.81187 1.90689 1.67899 1.50667 1.32339 1.46034 1.15654 1.31398 1.43936 1.22391 0.82266 0.97107 0.96612 0.86938 1.23592 0.98820 0.96277 0.98929 1.22800 0.97113 0.88224 0.96811 0.90840 1.60207 1.49351 1.09320 1.09779 1.21738 0.93397 0.94398 0.98793 1.19823 0.84220 0.87409 0.85964 1.90514 1.45689 1.75942 1.34763 1.41861 1.34418 1.09061 1.34636 1.19659 1.20027 0.83845 1.19525 0.87981 1.25262 0.96017 1.00574 0.96022 1.69606 1.23577 1.37046 1.24058 0.85916 0.78016 0.81853 0.78418 1.20969 1.19883 1.19930 1.23597 0.99761 0.98141 0.97130 1.22670 0.95493 0.99841 0.97429 0.92780 0.92799 0.92621 0.91911 0.92084 0.92261 0.90983 0.88968 0.88811 0.76431 0.88811 0.91411 0.82955 0.89609 0.93810 0.77445 0.91816 0.90895 0.88717 0.91603 0.91254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.75 9.13 37.16 0.34 -0.42 16 2 C -0.10 -0.60 3.45 -88.89 -0.31 -0.91 16 3 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 4 C -0.12 -0.86 6.37 -25.61 -0.16 -1.02 16 5 C -0.11 -0.97 5.48 -25.61 -0.14 -1.11 16 6 C -0.08 -0.56 2.46 -88.96 -0.22 -0.78 16 7 H 0.08 0.72 7.96 -51.93 -0.41 0.31 16 8 C -0.14 -0.89 5.09 -27.88 -0.14 -1.03 16 9 C 0.51 4.99 7.63 -10.98 -0.08 4.90 16 10 O -0.54 -7.26 14.49 5.56 0.08 -7.18 16 11 N -0.72 -6.15 5.36 -52.92 -0.28 -6.43 16 12 C 0.12 1.21 4.24 -67.02 -0.28 0.92 16 13 H 0.11 1.25 7.46 -51.93 -0.39 0.86 16 14 C -0.14 -1.58 7.69 -25.83 -0.20 -1.78 16 15 C 0.06 0.73 4.12 -66.90 -0.28 0.46 16 16 H 0.07 0.84 7.88 -51.93 -0.41 0.43 16 17 N -0.65 -10.23 6.18 -107.13 -0.66 -10.89 16 18 C 0.05 0.87 6.02 -4.98 -0.03 0.84 16 19 C 0.44 10.40 7.82 -10.98 -0.09 10.32 16 20 O -0.58 -15.83 15.78 5.55 0.09 -15.74 16 21 N -0.56 -14.33 5.29 -10.96 -0.06 -14.39 16 22 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 16 23 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 24 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 25 N -0.90 -24.58 13.05 55.50 0.72 -23.86 16 26 Si 0.93 21.07 29.55 -169.99 -5.02 16.04 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 29 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 30 C -0.15 -1.39 7.42 -25.92 -0.19 -1.58 16 31 C -0.12 -0.68 5.78 -24.68 -0.14 -0.82 16 32 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 35 H 0.06 0.42 7.84 -51.92 -0.41 0.01 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.51 7.74 -51.93 -0.40 0.11 16 38 H 0.07 0.75 7.67 -51.93 -0.40 0.35 16 39 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.09 0.51 8.01 -51.93 -0.42 0.09 16 41 H 0.40 2.52 8.73 -40.82 -0.36 2.16 16 42 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.35 5.59 8.26 -39.29 -0.32 5.26 16 45 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 46 H 0.04 0.69 8.13 -51.93 -0.42 0.27 16 47 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 48 H 0.27 7.03 8.31 -40.82 -0.34 6.70 16 49 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.09 0.87 8.12 -51.93 -0.42 0.45 16 51 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 52 H 0.07 0.37 7.98 -51.93 -0.41 -0.04 16 LS Contribution 417.60 15.07 6.29 6.29 Total: -1.00 -32.66 417.60 -10.26 -42.92 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: -9.26 Total: 13.29 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -2.17 Total: -0.05 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: -0.28 Total: -55.57 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: 0.17 Total: -22.92 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -32.66 -10.26 -42.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566848287.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.745 kcal (2) G-P(sol) polarization free energy of solvation -32.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds