Wall clock time and date at job start Tue Mar 31 2020 22:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09001 * 110.43084 * 2 1 4 4 C 1.54265 * 110.48632 * 122.53420 * 2 1 3 5 5 C 1.53873 * 106.59795 * 142.42294 * 4 2 1 6 6 C 1.54268 * 106.59674 * 0.02562 * 5 4 2 7 7 H 1.09000 * 110.48959 * 95.20178 * 6 5 4 8 8 C 1.53001 * 110.48470 * 217.71129 * 6 5 4 9 9 C 1.50704 * 109.47081 * 291.75673 * 8 6 5 10 10 O 1.21278 * 120.00010 * 0.02562 * 9 8 6 11 11 N 1.34776 * 119.99615 * 179.97438 * 9 8 6 12 12 C 1.46507 * 119.99745 * 179.97438 * 11 9 8 13 13 H 1.08997 * 112.84885 * 336.20259 * 12 11 9 14 14 C 1.53959 * 113.66338 * 107.44316 * 12 11 9 15 15 C 1.53776 * 87.01880 * 139.93329 * 14 12 11 16 16 H 1.09007 * 113.61307 * 89.22349 * 15 14 12 17 17 N 1.46895 * 113.61931 * 220.04440 * 15 14 12 18 18 C 1.46893 * 111.00318 * 254.13962 * 17 15 14 19 19 C 1.50708 * 109.47146 * 179.97438 * 18 17 15 20 20 O 1.21288 * 119.99815 * 359.97438 * 19 18 17 21 21 N 1.34774 * 119.99719 * 180.02562 * 19 18 17 22 22 C 1.37101 * 119.99349 * 180.02562 * 21 19 18 23 23 H 1.07991 * 120.00515 * 359.97438 * 22 21 19 24 24 C 1.38955 * 119.99490 * 179.97438 * 22 21 19 25 25 N 1.31413 * 120.00236 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99845 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47187 * 179.97438 * 26 24 22 28 28 H 1.48502 * 109.47194 * 300.00675 * 26 24 22 29 29 H 1.48498 * 109.47018 * 60.00238 * 26 24 22 30 30 C 1.53777 * 113.61401 * 205.00120 * 12 11 9 31 31 C 1.54883 * 104.31486 * 336.45359 * 6 5 4 32 32 H 1.08997 * 109.46902 * 298.91430 * 1 2 3 33 33 H 1.08995 * 109.46884 * 58.92028 * 1 2 3 34 34 H 1.09001 * 109.46722 * 178.91612 * 1 2 3 35 35 H 1.09008 * 110.03340 * 23.14053 * 4 2 1 36 36 H 1.09003 * 110.03686 * 261.70980 * 4 2 1 37 37 H 1.08998 * 110.03158 * 240.71688 * 5 4 2 38 38 H 1.08993 * 110.07416 * 119.30606 * 5 4 2 39 39 H 1.09001 * 109.47098 * 171.75595 * 8 6 5 40 40 H 1.09004 * 109.47267 * 51.75776 * 8 6 5 41 41 H 0.97002 * 120.00475 * 0.02562 * 11 9 8 42 42 H 1.08997 * 113.61092 * 25.41107 * 14 12 11 43 43 H 1.08998 * 113.66271 * 254.46111 * 14 12 11 44 44 H 1.00899 * 111.00063 * 130.18138 * 17 15 14 45 45 H 1.09002 * 109.47091 * 59.99845 * 18 17 15 46 46 H 1.09000 * 109.47343 * 299.99463 * 18 17 15 47 47 H 0.96996 * 120.00564 * 359.97438 * 21 19 18 48 48 H 0.97001 * 119.99781 * 179.97438 * 25 24 22 49 49 H 1.09001 * 113.61120 * 105.47656 * 30 12 11 50 50 H 1.09000 * 113.69525 * 334.58054 * 30 12 11 51 51 H 1.08999 * 110.76220 * 156.18809 * 31 6 5 52 52 H 1.09000 * 110.76018 * 279.56532 * 31 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0700 -0.7772 1.2183 5 6 3.3186 -1.5368 0.7370 6 6 3.4942 -1.1941 -0.7569 7 1 4.1938 -0.3673 -0.8790 8 6 3.9759 -2.4206 -1.5345 9 6 5.3845 -2.7579 -1.1183 10 8 5.9475 -2.0840 -0.2818 11 7 6.0181 -3.8091 -1.6751 12 6 7.3877 -4.1367 -1.2710 13 1 7.9244 -3.2809 -0.8615 14 6 7.4890 -5.4023 -0.4001 15 6 8.7576 -5.7512 -1.1962 16 1 9.6703 -5.3382 -0.7663 17 7 8.8751 -7.1791 -1.5201 18 6 9.8940 -7.8268 -0.6834 19 6 9.9853 -9.2874 -1.0432 20 8 9.2714 -9.7440 -1.9110 21 7 10.8595 -10.0865 -0.4000 22 6 10.9429 -11.4151 -0.7277 23 1 10.3078 -11.8215 -1.5009 24 6 11.8445 -12.2388 -0.0649 25 7 12.6176 -11.7443 0.8756 26 14 11.9577 -14.0493 -0.5109 27 1 12.9882 -14.7039 0.3345 28 1 10.6422 -14.6989 -0.2811 29 1 12.3331 -14.1842 -1.9413 30 6 8.1791 -4.9049 -2.3425 31 6 2.0770 -0.7786 -1.2236 32 1 -0.3633 0.4969 0.8995 33 1 -0.3633 0.5305 -0.8801 34 1 -0.3633 -1.0275 -0.0194 35 1 1.3185 -1.4819 1.5746 36 1 2.3390 -0.0832 2.0147 37 1 3.1731 -2.6100 0.8597 38 1 4.1939 -1.2122 1.2995 39 1 3.9544 -2.2050 -2.6028 40 1 3.3217 -3.2660 -1.3213 41 1 5.5677 -4.3483 -2.3439 42 1 6.6700 -6.1048 -0.5540 43 1 7.6778 -5.1947 0.6531 44 1 9.0740 -7.3124 -2.5003 45 1 9.6183 -7.7281 0.3666 46 1 10.8595 -7.3497 -0.8519 47 1 11.4301 -9.7214 0.2943 48 1 13.2468 -12.3194 1.3385 49 1 8.9242 -4.2964 -2.8551 50 1 7.5503 -5.4716 -3.0293 51 1 2.1326 -0.1342 -2.1010 52 1 1.4640 -1.6568 -1.4263 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566848287.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:39 Heat of formation + Delta-G solvation = -103.229419 kcal Electronic energy + Delta-G solvation = -28086.182967 eV Core-core repulsion = 24083.774485 eV Total energy + Delta-G solvation = -4002.408482 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.24478 -40.28195 -39.70305 -38.75813 -36.12671 -35.40656 -33.85904 -33.32937 -33.11117 -30.50298 -28.65976 -28.01931 -26.69361 -26.10848 -25.16327 -23.62769 -21.62004 -21.21446 -20.97112 -20.78183 -20.14792 -19.87682 -18.00945 -17.83335 -17.33661 -16.97661 -16.81674 -16.45557 -16.20894 -16.02856 -15.74713 -15.32327 -15.13263 -15.06221 -14.62414 -14.31785 -14.19126 -14.05888 -13.80626 -13.50390 -13.37291 -13.30892 -13.18576 -12.90772 -12.85782 -12.72340 -12.43800 -12.23380 -12.13862 -11.99165 -11.89952 -11.73206 -11.56349 -11.53417 -11.49438 -11.47313 -11.41687 -11.25591 -10.66934 -10.33333 -10.02048 -9.95419 -9.32765 -8.46595 -5.95730 1.40065 1.41970 1.53037 1.71633 2.04945 2.25206 2.31404 2.99026 3.20715 3.49179 3.56116 3.65532 3.67332 3.68120 3.81776 3.95863 3.99486 4.10252 4.27192 4.30689 4.38513 4.45570 4.47952 4.54901 4.60056 4.64471 4.71577 4.77130 4.78542 4.81257 4.85511 4.87179 4.90946 5.02104 5.03888 5.09347 5.15597 5.17730 5.21594 5.25267 5.38304 5.40566 5.43448 5.55007 5.61317 5.64226 5.92350 6.14126 6.43284 6.59679 6.65464 7.12039 7.35180 7.55838 8.10738 8.70514 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.027934 B = 0.001434 C = 0.001416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.116879 B =19518.818629 C =19773.264993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 H 0.068 0.932 4 C -0.121 4.121 5 C -0.115 4.115 6 C -0.075 4.075 7 H 0.063 0.937 8 C -0.129 4.129 9 C 0.507 3.493 10 O -0.582 6.582 11 N -0.711 5.711 12 C 0.129 3.871 13 H 0.102 0.898 14 C -0.138 4.138 15 C 0.057 3.943 16 H 0.083 0.917 17 N -0.665 5.665 18 C 0.064 3.936 19 C 0.438 3.562 20 O -0.622 6.622 21 N -0.573 5.573 22 C -0.337 4.337 23 H 0.080 0.920 24 C -0.012 4.012 25 N -0.921 5.921 26 Si 0.994 3.006 27 H -0.271 1.271 28 H -0.272 1.272 29 H -0.271 1.271 30 C -0.130 4.130 31 C -0.109 4.109 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.043 0.957 39 H 0.119 0.881 40 H 0.111 0.889 41 H 0.415 0.585 42 H 0.084 0.916 43 H 0.059 0.941 44 H 0.348 0.652 45 H 0.098 0.902 46 H 0.068 0.932 47 H 0.396 0.604 48 H 0.278 0.722 49 H 0.088 0.912 50 H 0.101 0.899 51 H 0.076 0.924 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.266 24.641 -4.427 31.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.117 4.117 3 H 0.087 0.913 4 C -0.159 4.159 5 C -0.153 4.153 6 C -0.094 4.094 7 H 0.081 0.919 8 C -0.169 4.169 9 C 0.295 3.705 10 O -0.462 6.462 11 N -0.362 5.362 12 C 0.023 3.977 13 H 0.120 0.880 14 C -0.178 4.178 15 C -0.053 4.053 16 H 0.101 0.899 17 N -0.298 5.298 18 C -0.069 4.069 19 C 0.225 3.775 20 O -0.509 6.509 21 N -0.210 5.210 22 C -0.466 4.466 23 H 0.098 0.902 24 C -0.212 4.212 25 N -0.561 5.561 26 Si 0.817 3.183 27 H -0.195 1.195 28 H -0.197 1.197 29 H -0.196 1.196 30 C -0.169 4.169 31 C -0.146 4.146 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.137 0.863 40 H 0.129 0.871 41 H 0.252 0.748 42 H 0.102 0.898 43 H 0.078 0.922 44 H 0.168 0.832 45 H 0.116 0.884 46 H 0.085 0.915 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.107 0.893 50 H 0.119 0.881 51 H 0.095 0.905 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -19.704 24.536 -3.881 31.707 hybrid contribution 1.445 -0.823 -0.008 1.663 sum -18.260 23.713 -3.889 30.180 Atomic orbital electron populations 1.21782 0.94135 1.02073 1.01906 1.21980 0.96068 0.98998 0.94664 0.91319 1.22241 0.96899 0.98861 0.97906 1.22113 0.97314 0.99657 0.96182 1.21698 0.97133 0.96401 0.94191 0.91885 1.21822 0.91469 1.00297 1.03273 1.21368 0.89390 0.79317 0.80381 1.90680 1.69090 1.52138 1.34297 1.45964 1.15134 1.31228 1.43865 1.22169 0.83114 0.96013 0.96406 0.87971 1.23566 0.98441 0.96964 0.98787 1.22922 0.97632 0.86370 0.98371 0.89893 1.60189 1.48657 1.11608 1.09336 1.21588 0.95381 0.90251 0.99636 1.20873 0.82493 0.89594 0.84533 1.90480 1.46801 1.77382 1.36231 1.41940 1.35204 1.08710 1.35179 1.19657 1.21113 0.85530 1.20307 0.90209 1.26050 0.95108 1.04490 0.95552 1.69671 1.23644 1.38510 1.24305 0.84982 0.78203 0.76736 0.78379 1.19522 1.19741 1.19574 1.23497 0.99708 0.97323 0.96364 1.22641 0.94147 1.00360 0.97485 0.92777 0.92030 0.92363 0.91425 0.92605 0.92637 0.93826 0.86313 0.87066 0.74833 0.89789 0.92224 0.83239 0.88435 0.91454 0.77027 0.91298 0.89345 0.88054 0.90507 0.90138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.13 71.99 0.66 -0.58 16 2 C -0.10 -1.09 3.45 -9.68 -0.03 -1.12 16 3 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 4 C -0.12 -1.68 6.37 31.32 0.20 -1.48 16 5 C -0.11 -1.97 5.48 31.32 0.17 -1.80 16 6 C -0.08 -1.05 2.46 -9.72 -0.02 -1.08 16 7 H 0.06 1.12 7.96 -2.39 -0.02 1.10 16 8 C -0.13 -1.44 5.09 29.85 0.15 -1.29 16 9 C 0.51 9.43 7.63 87.66 0.67 10.09 16 10 O -0.58 -15.94 14.49 -3.02 -0.04 -15.98 16 11 N -0.71 -11.06 5.36 -439.75 -2.36 -13.42 16 12 C 0.13 2.41 4.24 45.58 0.19 2.60 16 13 H 0.10 2.20 7.46 -2.39 -0.02 2.18 16 14 C -0.14 -3.08 7.69 31.18 0.24 -2.84 16 15 C 0.06 1.28 4.12 45.44 0.19 1.46 16 16 H 0.08 1.73 7.88 -2.38 -0.02 1.71 16 17 N -0.67 -20.07 6.18 -492.86 -3.04 -23.11 16 18 C 0.06 2.19 6.02 85.56 0.52 2.70 16 19 C 0.44 20.81 7.82 87.66 0.69 21.49 16 20 O -0.62 -34.24 15.78 -3.05 -0.05 -34.29 16 21 N -0.57 -29.56 5.29 -306.98 -1.62 -31.18 16 22 C -0.34 -19.18 9.68 84.04 0.81 -18.37 16 23 H 0.08 4.82 7.16 -2.92 -0.02 4.80 16 24 C -0.01 -0.65 5.50 84.93 0.47 -0.19 16 25 N -0.92 -49.86 13.05 21.66 0.28 -49.58 16 26 Si 0.99 42.88 29.55 68.60 2.03 44.91 16 27 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 28 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 29 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 30 C -0.13 -2.18 7.42 31.12 0.23 -1.95 16 31 C -0.11 -1.05 5.78 31.92 0.18 -0.86 16 32 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.07 0.86 7.84 -2.38 -0.02 0.84 16 36 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.05 0.96 7.74 -2.39 -0.02 0.94 16 38 H 0.04 0.98 7.67 -2.39 -0.02 0.96 16 39 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.11 0.91 8.01 -2.39 -0.02 0.89 16 41 H 0.41 4.24 8.73 -92.71 -0.81 3.43 16 42 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.35 10.75 8.26 -89.69 -0.74 10.01 16 45 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 46 H 0.07 2.01 8.13 -2.39 -0.02 1.99 16 47 H 0.40 19.45 7.90 -92.71 -0.73 18.72 16 48 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 49 H 0.09 1.26 8.14 -2.39 -0.02 1.25 16 50 H 0.10 1.61 8.12 -2.39 -0.02 1.59 16 51 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 52 H 0.08 0.62 7.98 -2.39 -0.02 0.61 16 Total: -1.00 -71.89 417.60 -0.85 -72.74 By element: Atomic # 1 Polarization: 44.47 SS G_CDS: -1.36 Total: 43.12 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: 5.31 Total: 6.80 kcal Atomic # 7 Polarization: -110.55 SS G_CDS: -6.74 Total: -117.29 kcal Atomic # 8 Polarization: -50.18 SS G_CDS: -0.09 Total: -50.27 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -71.89 -0.85 -72.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566848287.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.487 kcal (2) G-P(sol) polarization free energy of solvation -71.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds