Wall clock time and date at job start Tue Mar 31 2020 22:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 110.67128 * 2 1 4 4 C 1.54890 * 110.75578 * 236.76784 * 2 1 3 5 5 C 1.54265 * 104.19696 * 203.74125 * 4 2 1 6 6 C 1.53876 * 106.60057 * 23.60739 * 5 4 2 7 7 H 1.08997 * 110.03718 * 240.66946 * 6 5 4 8 8 C 1.52999 * 110.03243 * 119.28167 * 6 5 4 9 9 C 1.50706 * 109.46573 * 66.46003 * 8 6 5 10 10 O 1.21274 * 120.00042 * 359.72068 * 9 8 6 11 11 N 1.34777 * 119.99766 * 179.97438 * 9 8 6 12 12 C 1.46496 * 120.00266 * 179.97438 * 11 9 8 13 13 H 1.09004 * 112.84839 * 25.33717 * 12 11 9 14 14 C 1.53781 * 113.61473 * 156.53203 * 12 11 9 15 15 C 1.53781 * 87.07820 * 139.98533 * 14 12 11 16 16 H 1.08997 * 113.61660 * 89.20292 * 15 14 12 17 17 N 1.46905 * 113.61127 * 220.01573 * 15 14 12 18 18 C 1.46905 * 110.99764 * 204.99823 * 17 15 14 19 19 C 1.50704 * 109.46701 * 179.97438 * 18 17 15 20 20 O 1.21291 * 120.00253 * 0.02562 * 19 18 17 21 21 N 1.34779 * 119.99674 * 180.02562 * 19 18 17 22 22 C 1.37096 * 119.99684 * 180.02562 * 21 19 18 23 23 H 1.08002 * 120.00339 * 359.97438 * 22 21 19 24 24 C 1.38953 * 119.99743 * 179.97438 * 22 21 19 25 25 N 1.31416 * 119.99653 * 179.97438 * 24 22 21 26 26 Si 1.86795 * 120.00020 * 0.02562 * 24 22 21 27 27 H 1.48499 * 109.47319 * 89.99978 * 26 24 22 28 28 H 1.48505 * 109.46933 * 210.00131 * 26 24 22 29 29 H 1.48501 * 109.47100 * 329.99481 * 26 24 22 30 30 C 1.53777 * 113.61904 * 254.14085 * 12 11 9 31 31 C 1.54276 * 106.59527 * 0.02562 * 6 5 4 32 32 H 1.09002 * 109.46893 * 181.77981 * 1 2 3 33 33 H 1.08998 * 109.47391 * 301.77743 * 1 2 3 34 34 H 1.09000 * 109.47566 * 61.78569 * 1 2 3 35 35 H 1.09003 * 110.48743 * 85.06178 * 4 2 1 36 36 H 1.09002 * 110.60316 * 322.47293 * 4 2 1 37 37 H 1.09008 * 110.03178 * 264.32568 * 5 4 2 38 38 H 1.08997 * 110.07751 * 142.91532 * 5 4 2 39 39 H 1.09000 * 109.47486 * 306.46069 * 8 6 5 40 40 H 1.09001 * 109.47362 * 186.45346 * 8 6 5 41 41 H 0.96999 * 120.00043 * 0.02562 * 11 9 8 42 42 H 1.09006 * 113.61481 * 254.52946 * 14 12 11 43 43 H 1.08995 * 113.61463 * 25.43636 * 14 12 11 44 44 H 1.00897 * 110.99751 * 81.05290 * 17 15 14 45 45 H 1.08991 * 109.47582 * 300.00220 * 18 17 15 46 46 H 1.09001 * 109.46556 * 60.00593 * 18 17 15 47 47 H 0.97002 * 119.99978 * 0.02562 * 21 19 18 48 48 H 0.96997 * 119.99805 * 180.02562 * 25 24 22 49 49 H 1.09000 * 113.61385 * 334.57004 * 30 12 11 50 50 H 1.09003 * 113.61491 * 105.46229 * 30 12 11 51 51 H 1.09000 * 110.48401 * 95.06293 * 31 6 5 52 52 H 1.08994 * 110.48434 * 217.71221 * 31 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9147 1.0199 0.0000 4 6 2.0789 -0.7938 -1.2115 5 6 3.4931 -1.2254 -0.7717 6 6 3.4932 -1.2281 0.7671 7 1 4.2332 -0.5210 1.1418 8 6 3.8003 -2.6333 1.2887 9 6 5.2153 -3.0052 0.9268 10 8 5.9078 -2.2254 0.3079 11 7 5.7093 -4.2064 1.2865 12 6 7.0844 -4.5683 0.9343 13 1 7.7287 -3.6998 0.7970 14 6 7.6908 -5.6469 1.8475 15 6 8.3224 -6.2512 0.5822 16 1 9.3062 -5.8446 0.3484 17 7 8.2903 -7.7196 0.5524 18 6 9.3630 -8.2524 -0.2982 19 6 9.2987 -9.7580 -0.3036 20 8 8.4432 -10.3309 0.3376 21 7 10.1918 -10.4681 -1.0210 22 6 10.1330 -11.8378 -1.0264 23 1 9.3712 -12.3478 -0.4554 24 6 11.0535 -12.5698 -1.7664 25 7 10.9974 -13.8827 -1.7711 26 14 12.3714 -11.6876 -2.7534 27 1 13.5773 -11.4955 -1.9083 28 1 12.7258 -12.5012 -3.9441 29 1 11.8587 -10.3649 -3.1926 30 6 7.1785 -5.5919 -0.2094 31 6 2.0787 -0.7986 1.2086 32 1 -0.3633 -1.0272 0.0319 33 1 -0.3634 0.5412 0.8736 34 1 -0.3634 0.4858 -0.9055 35 1 2.1319 -0.1554 -2.0935 36 1 1.4581 -1.6673 -1.4108 37 1 4.2326 -0.5163 -1.1438 38 1 3.7128 -2.2249 -1.1468 39 1 3.1105 -3.3470 0.8382 40 1 3.6858 -2.6517 2.3725 41 1 5.1540 -4.8317 1.7780 42 1 8.4212 -5.2581 2.5571 43 1 6.9468 -6.2919 2.3149 44 1 7.3883 -8.0555 0.2497 45 1 9.2396 -7.8794 -1.3149 46 1 10.3290 -7.9318 0.0918 47 1 10.8762 -10.0100 -1.5336 48 1 11.6401 -14.3937 -2.2874 49 1 6.2942 -6.2218 -0.3054 50 1 7.4958 -5.1587 -1.1581 51 1 1.4576 -1.6732 1.4024 52 1 2.1316 -0.1634 2.0928 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566848288.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:49 Heat of formation + Delta-G solvation = -73.283105 kcal Electronic energy + Delta-G solvation = -28205.787464 eV Core-core repulsion = 24204.677553 eV Total energy + Delta-G solvation = -4001.109912 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.55311 -39.36227 -38.43750 -37.94556 -34.67904 -33.91064 -33.09927 -32.43819 -31.64199 -29.94674 -27.86088 -26.91024 -25.84684 -24.84980 -24.05325 -22.71785 -20.90528 -20.45767 -20.32765 -19.64747 -19.28709 -18.29620 -17.19010 -16.87361 -16.49167 -15.89172 -15.58812 -15.36328 -15.02163 -14.83267 -14.66097 -14.37546 -14.02165 -13.88105 -13.65709 -13.30327 -13.25080 -13.15164 -12.94659 -12.64567 -12.57856 -12.34795 -12.29902 -12.08756 -11.80633 -11.46760 -11.33828 -11.27787 -11.18732 -11.10269 -11.01252 -10.96491 -10.89730 -10.87768 -10.69930 -10.60009 -9.98610 -9.93307 -9.58166 -9.23703 -8.59246 -8.19800 -8.11110 -6.31962 -3.83415 2.40674 2.93160 3.02100 3.06625 3.14744 3.73113 4.08163 4.11094 4.14876 4.18316 4.29231 4.37775 4.49562 4.60401 4.71023 4.72576 4.78025 4.83766 4.96760 5.03760 5.09380 5.16856 5.21886 5.23005 5.24107 5.31723 5.33827 5.40628 5.50061 5.56963 5.57505 5.58751 5.63631 5.68889 5.73825 5.76644 5.79850 5.84739 5.86318 5.89530 5.97147 5.99846 6.08881 6.11640 6.35334 7.11247 7.27220 7.54569 7.57872 8.00362 8.13591 8.58891 8.94053 9.41629 9.81724 10.81159 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.025416 B = 0.001508 C = 0.001494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.395232 B =18562.413835 C =18743.232504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.074 0.926 4 C -0.124 4.124 5 C -0.109 4.109 6 C -0.076 4.076 7 H 0.078 0.922 8 C -0.136 4.136 9 C 0.511 3.489 10 O -0.538 6.538 11 N -0.721 5.721 12 C 0.122 3.878 13 H 0.113 0.887 14 C -0.132 4.132 15 C 0.071 3.929 16 H 0.099 0.901 17 N -0.654 5.654 18 C 0.047 3.953 19 C 0.449 3.551 20 O -0.566 6.566 21 N -0.590 5.590 22 C -0.306 4.306 23 H 0.119 0.881 24 C 0.042 3.958 25 N -0.881 5.881 26 Si 0.880 3.120 27 H -0.270 1.270 28 H -0.277 1.277 29 H -0.270 1.270 30 C -0.181 4.181 31 C -0.117 4.117 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.401 0.599 42 H 0.075 0.925 43 H 0.092 0.908 44 H 0.353 0.647 45 H 0.046 0.954 46 H 0.088 0.912 47 H 0.371 0.629 48 H 0.273 0.727 49 H 0.087 0.913 50 H 0.070 0.930 51 H 0.068 0.932 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.906 29.062 4.446 33.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 H 0.093 0.907 4 C -0.161 4.161 5 C -0.147 4.147 6 C -0.095 4.095 7 H 0.097 0.903 8 C -0.176 4.176 9 C 0.298 3.702 10 O -0.415 6.415 11 N -0.372 5.372 12 C 0.017 3.983 13 H 0.131 0.869 14 C -0.171 4.171 15 C -0.041 4.041 16 H 0.117 0.883 17 N -0.286 5.286 18 C -0.086 4.086 19 C 0.235 3.765 20 O -0.448 6.448 21 N -0.230 5.230 22 C -0.435 4.435 23 H 0.137 0.863 24 C -0.161 4.161 25 N -0.521 5.521 26 Si 0.706 3.294 27 H -0.196 1.196 28 H -0.202 1.202 29 H -0.195 1.195 30 C -0.222 4.222 31 C -0.154 4.154 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.112 0.888 40 H 0.110 0.890 41 H 0.236 0.764 42 H 0.094 0.906 43 H 0.110 0.890 44 H 0.173 0.827 45 H 0.064 0.936 46 H 0.106 0.894 47 H 0.203 0.797 48 H 0.084 0.916 49 H 0.105 0.895 50 H 0.089 0.911 51 H 0.087 0.913 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.527 28.920 4.938 33.194 hybrid contribution 0.613 0.287 -1.544 1.686 sum -14.913 29.207 3.394 32.969 Atomic orbital electron populations 1.21767 0.95056 1.01801 1.01546 1.22099 0.95263 0.99221 0.95091 0.90710 1.22486 0.96501 0.99591 0.97533 1.22094 0.96340 1.01754 0.94521 1.21523 0.97018 0.94826 0.96086 0.90315 1.21861 0.93776 0.99031 1.02979 1.20784 0.89422 0.81276 0.78724 1.90697 1.60741 1.50309 1.39763 1.46058 1.14709 1.17760 1.58623 1.22374 0.83121 0.96677 0.96155 0.86943 1.23458 1.00370 0.96071 0.97246 1.22852 0.97722 0.87911 0.95623 0.88288 1.60016 1.07837 1.05189 1.55518 1.21762 0.96503 0.94719 0.95629 1.19731 0.84714 0.88024 0.84032 1.90560 1.37671 1.71385 1.45181 1.42212 1.29144 1.07512 1.44108 1.19437 1.16147 0.79136 1.28736 0.86290 1.25039 0.97917 0.95414 0.97749 1.69624 1.36652 1.04704 1.41136 0.86667 0.82476 0.79561 0.80652 1.19575 1.20185 1.19532 1.24258 1.00189 0.98969 0.98769 1.22527 0.95385 0.99766 0.97734 0.92627 0.92769 0.92739 0.91931 0.91745 0.91546 0.92111 0.88845 0.88965 0.76432 0.90622 0.88960 0.82671 0.93629 0.89412 0.79670 0.91610 0.89457 0.91144 0.91311 0.91665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.71 9.27 37.16 0.34 -0.37 16 2 C -0.10 -0.57 3.50 -88.62 -0.31 -0.88 16 3 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 4 C -0.12 -0.81 6.27 -25.07 -0.16 -0.97 16 5 C -0.11 -0.89 5.33 -25.61 -0.14 -1.03 16 6 C -0.08 -0.54 2.56 -89.50 -0.23 -0.77 16 7 H 0.08 0.67 7.97 -51.93 -0.41 0.25 16 8 C -0.14 -0.85 4.86 -27.88 -0.14 -0.98 16 9 C 0.51 4.74 7.35 -10.98 -0.08 4.66 16 10 O -0.54 -7.01 14.68 5.56 0.08 -6.93 16 11 N -0.72 -5.74 5.36 -53.02 -0.28 -6.02 16 12 C 0.12 1.13 4.21 -67.12 -0.28 0.84 16 13 H 0.11 1.17 7.50 -51.93 -0.39 0.78 16 14 C -0.13 -1.23 7.63 -25.92 -0.20 -1.43 16 15 C 0.07 0.77 4.18 -66.81 -0.28 0.49 16 16 H 0.10 1.01 7.87 -51.93 -0.41 0.61 16 17 N -0.65 -9.64 6.24 -107.03 -0.67 -10.31 16 18 C 0.05 0.75 6.01 -4.97 -0.03 0.72 16 19 C 0.45 10.12 7.82 -10.98 -0.09 10.03 16 20 O -0.57 -15.09 15.78 5.55 0.09 -15.01 16 21 N -0.59 -14.03 5.09 -10.96 -0.06 -14.08 16 22 C -0.31 -8.66 10.16 -14.93 -0.15 -8.81 16 23 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 24 C 0.04 1.14 5.50 -17.46 -0.10 1.05 16 25 N -0.88 -25.72 13.96 55.50 0.77 -24.95 16 26 Si 0.88 19.35 27.74 -169.99 -4.71 14.63 16 27 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 28 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 29 H -0.27 -5.40 6.52 56.52 0.37 -5.04 16 30 C -0.18 -1.81 7.51 -25.83 -0.19 -2.00 16 31 C -0.12 -0.65 5.81 -25.06 -0.15 -0.79 16 32 H 0.05 0.27 8.12 -51.93 -0.42 -0.15 16 33 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.41 8.05 -51.93 -0.42 -0.01 16 37 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 38 H 0.06 0.55 7.32 -51.93 -0.38 0.17 16 39 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.40 2.29 8.71 -40.82 -0.36 1.93 16 42 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.09 0.87 8.11 -51.93 -0.42 0.45 16 44 H 0.35 5.40 7.90 -39.29 -0.31 5.09 16 45 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.09 1.27 8.13 -51.93 -0.42 0.85 16 47 H 0.37 7.72 5.76 -40.82 -0.24 7.48 16 48 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 49 H 0.09 0.88 7.83 -51.93 -0.41 0.47 16 50 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 51 H 0.07 0.34 7.74 -51.93 -0.40 -0.06 16 52 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 413.83 15.07 6.24 6.24 Total: -1.00 -33.96 413.83 -9.90 -43.86 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: -9.19 Total: 12.79 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -2.17 Total: -0.22 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: -0.23 Total: -55.37 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: 0.17 Total: -21.93 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -4.71 Total: 14.63 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -33.96 -9.90 -43.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566848288.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.424 kcal (2) G-P(sol) polarization free energy of solvation -33.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds