Wall clock time and date at job start Tue Mar 31 2020 22:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 110.67128 * 2 1 4 4 C 1.54890 * 110.75578 * 236.76784 * 2 1 3 5 5 C 1.54265 * 104.19696 * 203.74125 * 4 2 1 6 6 C 1.53876 * 106.60057 * 23.60739 * 5 4 2 7 7 H 1.08997 * 110.03718 * 240.66946 * 6 5 4 8 8 C 1.52999 * 110.03243 * 119.28167 * 6 5 4 9 9 C 1.50706 * 109.46573 * 66.46003 * 8 6 5 10 10 O 1.21274 * 120.00042 * 359.72068 * 9 8 6 11 11 N 1.34777 * 119.99766 * 179.97438 * 9 8 6 12 12 C 1.46496 * 120.00266 * 179.97438 * 11 9 8 13 13 H 1.09004 * 112.84839 * 25.33717 * 12 11 9 14 14 C 1.53781 * 113.61473 * 156.53203 * 12 11 9 15 15 C 1.53781 * 87.07820 * 139.98533 * 14 12 11 16 16 H 1.08997 * 113.61660 * 89.20292 * 15 14 12 17 17 N 1.46905 * 113.61127 * 220.01573 * 15 14 12 18 18 C 1.46905 * 110.99764 * 204.99823 * 17 15 14 19 19 C 1.50704 * 109.46701 * 179.97438 * 18 17 15 20 20 O 1.21291 * 120.00253 * 0.02562 * 19 18 17 21 21 N 1.34779 * 119.99674 * 180.02562 * 19 18 17 22 22 C 1.37096 * 119.99684 * 180.02562 * 21 19 18 23 23 H 1.08002 * 120.00339 * 359.97438 * 22 21 19 24 24 C 1.38953 * 119.99743 * 179.97438 * 22 21 19 25 25 N 1.31416 * 119.99653 * 179.97438 * 24 22 21 26 26 Si 1.86795 * 120.00020 * 0.02562 * 24 22 21 27 27 H 1.48499 * 109.47319 * 89.99978 * 26 24 22 28 28 H 1.48505 * 109.46933 * 210.00131 * 26 24 22 29 29 H 1.48501 * 109.47100 * 329.99481 * 26 24 22 30 30 C 1.53777 * 113.61904 * 254.14085 * 12 11 9 31 31 C 1.54276 * 106.59527 * 0.02562 * 6 5 4 32 32 H 1.09002 * 109.46893 * 181.77981 * 1 2 3 33 33 H 1.08998 * 109.47391 * 301.77743 * 1 2 3 34 34 H 1.09000 * 109.47566 * 61.78569 * 1 2 3 35 35 H 1.09003 * 110.48743 * 85.06178 * 4 2 1 36 36 H 1.09002 * 110.60316 * 322.47293 * 4 2 1 37 37 H 1.09008 * 110.03178 * 264.32568 * 5 4 2 38 38 H 1.08997 * 110.07751 * 142.91532 * 5 4 2 39 39 H 1.09000 * 109.47486 * 306.46069 * 8 6 5 40 40 H 1.09001 * 109.47362 * 186.45346 * 8 6 5 41 41 H 0.96999 * 120.00043 * 0.02562 * 11 9 8 42 42 H 1.09006 * 113.61481 * 254.52946 * 14 12 11 43 43 H 1.08995 * 113.61463 * 25.43636 * 14 12 11 44 44 H 1.00897 * 110.99751 * 81.05290 * 17 15 14 45 45 H 1.08991 * 109.47582 * 300.00220 * 18 17 15 46 46 H 1.09001 * 109.46556 * 60.00593 * 18 17 15 47 47 H 0.97002 * 119.99978 * 0.02562 * 21 19 18 48 48 H 0.96997 * 119.99805 * 180.02562 * 25 24 22 49 49 H 1.09000 * 113.61385 * 334.57004 * 30 12 11 50 50 H 1.09003 * 113.61491 * 105.46229 * 30 12 11 51 51 H 1.09000 * 110.48401 * 95.06293 * 31 6 5 52 52 H 1.08994 * 110.48434 * 217.71221 * 31 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9147 1.0199 0.0000 4 6 2.0789 -0.7938 -1.2115 5 6 3.4931 -1.2254 -0.7717 6 6 3.4932 -1.2281 0.7671 7 1 4.2332 -0.5210 1.1418 8 6 3.8003 -2.6333 1.2887 9 6 5.2153 -3.0052 0.9268 10 8 5.9078 -2.2254 0.3079 11 7 5.7093 -4.2064 1.2865 12 6 7.0844 -4.5683 0.9343 13 1 7.7287 -3.6998 0.7970 14 6 7.6908 -5.6469 1.8475 15 6 8.3224 -6.2512 0.5822 16 1 9.3062 -5.8446 0.3484 17 7 8.2903 -7.7196 0.5524 18 6 9.3630 -8.2524 -0.2982 19 6 9.2987 -9.7580 -0.3036 20 8 8.4432 -10.3309 0.3376 21 7 10.1918 -10.4681 -1.0210 22 6 10.1330 -11.8378 -1.0264 23 1 9.3712 -12.3478 -0.4554 24 6 11.0535 -12.5698 -1.7664 25 7 10.9974 -13.8827 -1.7711 26 14 12.3714 -11.6876 -2.7534 27 1 13.5773 -11.4955 -1.9083 28 1 12.7258 -12.5012 -3.9441 29 1 11.8587 -10.3649 -3.1926 30 6 7.1785 -5.5919 -0.2094 31 6 2.0787 -0.7986 1.2086 32 1 -0.3633 -1.0272 0.0319 33 1 -0.3634 0.5412 0.8736 34 1 -0.3634 0.4858 -0.9055 35 1 2.1319 -0.1554 -2.0935 36 1 1.4581 -1.6673 -1.4108 37 1 4.2326 -0.5163 -1.1438 38 1 3.7128 -2.2249 -1.1468 39 1 3.1105 -3.3470 0.8382 40 1 3.6858 -2.6517 2.3725 41 1 5.1540 -4.8317 1.7780 42 1 8.4212 -5.2581 2.5571 43 1 6.9468 -6.2919 2.3149 44 1 7.3883 -8.0555 0.2497 45 1 9.2396 -7.8794 -1.3149 46 1 10.3290 -7.9318 0.0918 47 1 10.8762 -10.0100 -1.5336 48 1 11.6401 -14.3937 -2.2874 49 1 6.2942 -6.2218 -0.3054 50 1 7.4958 -5.1587 -1.1581 51 1 1.4576 -1.6732 1.4024 52 1 2.1316 -0.1634 2.0928 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566848288.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:46 Heat of formation + Delta-G solvation = -98.280335 kcal Electronic energy + Delta-G solvation = -28206.871426 eV Core-core repulsion = 24204.677553 eV Total energy + Delta-G solvation = -4002.193873 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.30158 -40.40677 -39.79242 -38.76931 -36.15411 -35.43146 -33.88300 -33.69483 -33.18690 -30.49089 -28.75736 -28.06178 -26.62959 -25.97879 -25.16788 -23.64170 -21.62880 -21.41386 -21.04679 -20.87667 -20.35370 -20.03498 -17.94848 -17.81110 -17.35494 -17.03394 -16.96021 -16.51691 -16.19031 -15.95388 -15.45990 -15.30274 -15.17940 -14.83359 -14.63719 -14.46464 -14.39001 -14.07640 -14.02103 -13.64730 -13.54157 -13.42230 -13.21879 -13.03650 -12.84804 -12.77527 -12.41560 -12.15072 -12.03614 -11.99040 -11.90160 -11.76785 -11.74432 -11.52419 -11.51391 -11.49617 -11.36477 -11.29579 -10.69314 -10.42315 -10.24915 -9.98537 -9.24377 -8.41587 -6.02465 1.30333 1.35667 1.44360 1.69947 1.95448 2.22785 2.26060 2.77672 3.14911 3.37645 3.58463 3.65475 3.67046 3.73508 3.79604 3.92027 3.99527 4.06998 4.17202 4.24848 4.36755 4.45986 4.49085 4.50738 4.61314 4.64828 4.72222 4.74543 4.77754 4.79499 4.81513 4.85326 4.89220 5.00867 5.02708 5.09664 5.14242 5.15480 5.19690 5.23152 5.38521 5.43704 5.52060 5.53034 5.60115 5.63514 5.92198 6.10581 6.38848 6.59569 6.63588 6.87794 7.33247 7.39627 7.95969 8.76024 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.025416 B = 0.001508 C = 0.001494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.395232 B =18562.413835 C =18743.232504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 H 0.070 0.930 4 C -0.121 4.121 5 C -0.109 4.109 6 C -0.075 4.075 7 H 0.060 0.940 8 C -0.130 4.130 9 C 0.507 3.493 10 O -0.581 6.581 11 N -0.712 5.712 12 C 0.128 3.872 13 H 0.102 0.898 14 C -0.123 4.123 15 C 0.069 3.931 16 H 0.113 0.887 17 N -0.670 5.670 18 C 0.060 3.940 19 C 0.448 3.552 20 O -0.615 6.615 21 N -0.591 5.591 22 C -0.330 4.330 23 H 0.056 0.944 24 C -0.014 4.014 25 N -0.934 5.934 26 Si 0.964 3.036 27 H -0.257 1.257 28 H -0.275 1.275 29 H -0.232 1.232 30 C -0.175 4.175 31 C -0.110 4.110 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.044 0.956 38 H 0.048 0.952 39 H 0.111 0.889 40 H 0.117 0.883 41 H 0.414 0.586 42 H 0.083 0.917 43 H 0.092 0.908 44 H 0.346 0.654 45 H 0.075 0.925 46 H 0.115 0.885 47 H 0.390 0.610 48 H 0.279 0.721 49 H 0.086 0.914 50 H 0.066 0.934 51 H 0.081 0.919 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.607 31.608 4.234 35.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.117 4.117 3 H 0.088 0.912 4 C -0.159 4.159 5 C -0.147 4.147 6 C -0.094 4.094 7 H 0.079 0.921 8 C -0.170 4.170 9 C 0.295 3.705 10 O -0.461 6.461 11 N -0.363 5.363 12 C 0.022 3.978 13 H 0.120 0.880 14 C -0.162 4.162 15 C -0.042 4.042 16 H 0.131 0.869 17 N -0.301 5.301 18 C -0.072 4.072 19 C 0.236 3.764 20 O -0.499 6.499 21 N -0.233 5.233 22 C -0.459 4.459 23 H 0.074 0.926 24 C -0.212 4.212 25 N -0.575 5.575 26 Si 0.784 3.216 27 H -0.181 1.181 28 H -0.201 1.201 29 H -0.155 1.155 30 C -0.216 4.216 31 C -0.147 4.147 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.129 0.871 40 H 0.135 0.865 41 H 0.251 0.749 42 H 0.102 0.898 43 H 0.111 0.889 44 H 0.166 0.834 45 H 0.093 0.907 46 H 0.133 0.867 47 H 0.225 0.775 48 H 0.089 0.911 49 H 0.104 0.896 50 H 0.085 0.915 51 H 0.100 0.900 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.249 31.486 4.750 35.306 hybrid contribution 0.428 -0.541 -1.406 1.566 sum -14.821 30.945 3.344 34.474 Atomic orbital electron populations 1.21744 0.94129 1.02149 1.01887 1.22103 0.95984 0.98867 0.94754 0.91196 1.22472 0.95578 0.99898 0.97921 1.22052 0.96718 1.00347 0.95559 1.21490 0.97663 0.95149 0.95133 0.92142 1.21884 0.91866 0.98636 1.04565 1.21344 0.90331 0.80945 0.77850 1.90684 1.62040 1.51594 1.41768 1.45995 1.14400 1.17740 1.58205 1.22183 0.83687 0.96078 0.95842 0.87991 1.23382 1.00367 0.95632 0.96795 1.22988 0.98823 0.85545 0.96845 0.86941 1.60049 1.07116 1.07493 1.55422 1.21699 0.98391 0.89180 0.97933 1.21022 0.82837 0.90828 0.81727 1.90538 1.39380 1.73280 1.46707 1.42046 1.30338 1.05784 1.45121 1.19023 1.15835 0.81530 1.29551 0.92626 1.26102 1.00492 0.96135 0.98509 1.69805 1.38195 1.07099 1.42358 0.85370 0.78291 0.79585 0.78311 1.18142 1.20059 1.15514 1.24189 0.99784 0.98889 0.98741 1.22501 0.94209 1.00298 0.97738 0.92268 0.92132 0.92733 0.92170 0.91194 0.93740 0.93361 0.87125 0.86512 0.74902 0.89842 0.88927 0.83390 0.90724 0.86694 0.77473 0.91149 0.89587 0.91490 0.90033 0.90908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.27 71.98 0.67 -0.47 16 2 C -0.10 -1.01 3.50 -9.50 -0.03 -1.05 16 3 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 4 C -0.12 -1.52 6.27 31.67 0.20 -1.32 16 5 C -0.11 -1.78 5.33 31.32 0.17 -1.62 16 6 C -0.08 -1.00 2.56 -10.07 -0.03 -1.03 16 7 H 0.06 1.03 7.97 -2.39 -0.02 1.01 16 8 C -0.13 -1.37 4.86 29.85 0.14 -1.22 16 9 C 0.51 8.86 7.35 87.66 0.64 9.50 16 10 O -0.58 -15.15 14.68 -3.01 -0.04 -15.20 16 11 N -0.71 -10.15 5.36 -440.05 -2.36 -12.51 16 12 C 0.13 2.15 4.21 45.52 0.19 2.34 16 13 H 0.10 2.01 7.50 -2.39 -0.02 1.99 16 14 C -0.12 -2.02 7.63 31.12 0.24 -1.79 16 15 C 0.07 1.33 4.18 45.50 0.19 1.52 16 16 H 0.11 1.92 7.87 -2.39 -0.02 1.90 16 17 N -0.67 -18.48 6.24 -492.55 -3.08 -21.55 16 18 C 0.06 1.78 6.01 85.56 0.51 2.30 16 19 C 0.45 19.99 7.82 87.66 0.69 20.68 16 20 O -0.61 -33.75 15.78 -3.06 -0.05 -33.80 16 21 N -0.59 -27.75 5.09 -306.98 -1.56 -29.31 16 22 C -0.33 -19.34 10.16 84.04 0.85 -18.49 16 23 H 0.06 3.88 7.39 -2.91 -0.02 3.86 16 24 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 25 N -0.93 -56.27 13.96 21.66 0.30 -55.97 16 26 Si 0.96 38.70 27.74 68.60 1.90 40.60 16 27 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 28 H -0.28 -10.99 7.11 99.48 0.71 -10.29 16 29 H -0.23 -7.82 6.52 99.48 0.65 -7.17 16 30 C -0.18 -3.18 7.51 31.18 0.23 -2.95 16 31 C -0.11 -1.00 5.81 31.68 0.18 -0.82 16 32 H 0.06 0.44 8.12 -2.39 -0.02 0.42 16 33 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.07 0.80 8.05 -2.39 -0.02 0.78 16 37 H 0.04 0.89 8.14 -2.38 -0.02 0.88 16 38 H 0.05 0.89 7.32 -2.39 -0.02 0.87 16 39 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.41 3.79 8.71 -92.71 -0.81 2.98 16 42 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 43 H 0.09 1.55 8.11 -2.39 -0.02 1.53 16 44 H 0.35 10.26 7.90 -89.70 -0.71 9.55 16 45 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.12 2.85 8.13 -2.39 -0.02 2.83 16 47 H 0.39 15.10 5.76 -92.71 -0.53 14.57 16 48 H 0.28 15.36 8.31 -92.71 -0.77 14.58 16 49 H 0.09 1.60 7.83 -2.39 -0.02 1.58 16 50 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 51 H 0.08 0.56 7.74 -2.39 -0.02 0.54 16 52 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -79.63 413.83 -0.74 -80.38 By element: Atomic # 1 Polarization: 43.23 SS G_CDS: -1.18 Total: 42.05 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: 5.32 Total: 5.31 kcal Atomic # 7 Polarization: -112.65 SS G_CDS: -6.69 Total: -119.34 kcal Atomic # 8 Polarization: -48.90 SS G_CDS: -0.09 Total: -48.99 kcal Atomic # 14 Polarization: 38.70 SS G_CDS: 1.90 Total: 40.60 kcal Total: -79.63 -0.74 -80.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566848288.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.905 kcal (2) G-P(sol) polarization free energy of solvation -79.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds