Wall clock time and date at job start Tue Mar 31 2020 22:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46948 * 2 1 4 4 N 1.46898 * 109.47420 * 239.99390 * 2 1 3 5 5 C 1.46906 * 110.99888 * 85.00182 * 4 2 1 6 6 C 1.50699 * 109.47140 * 179.97438 * 5 4 2 7 7 O 1.21289 * 119.99678 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99614 * 180.02562 * 6 5 4 9 9 C 1.37097 * 119.99518 * 180.02562 * 8 6 5 10 10 H 1.07996 * 120.00466 * 359.97438 * 9 8 6 11 11 C 1.38949 * 120.00085 * 179.97438 * 9 8 6 12 12 N 1.31416 * 119.99807 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00303 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46948 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46809 * 120.00147 * 13 11 9 16 16 H 1.48497 * 109.47378 * 239.99941 * 13 11 9 17 17 C 1.53001 * 109.47100 * 119.99305 * 2 1 3 18 18 C 1.53050 * 109.45803 * 60.02891 * 17 2 1 19 19 C 1.53192 * 109.31251 * 178.60032 * 18 17 2 20 20 N 1.46924 * 108.76369 * 54.65428 * 19 18 17 21 21 C 1.34781 * 120.62857 * 126.40333 * 20 19 18 22 22 O 1.21275 * 119.99949 * 179.97438 * 21 20 19 23 23 C 1.50699 * 119.99923 * 359.97438 * 21 20 19 24 24 H 1.08998 * 115.55356 * 325.72654 * 23 21 20 25 25 C 1.53004 * 117.49765 * 111.38907 * 23 21 20 26 26 C 1.52996 * 59.99973 * 107.48956 * 25 23 21 27 27 H 1.09001 * 117.50141 * 252.51355 * 26 25 23 28 28 C 1.52999 * 117.49696 * 107.48984 * 26 25 23 29 29 C 1.46928 * 118.74392 * 306.38861 * 20 19 18 30 30 C 1.53041 * 109.46362 * 299.97891 * 17 2 1 31 31 H 1.09002 * 109.46948 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47372 * 300.00433 * 1 2 3 33 33 H 1.09000 * 109.47137 * 60.01031 * 1 2 3 34 34 H 1.00901 * 111.00121 * 321.04769 * 4 2 1 35 35 H 1.09004 * 109.47040 * 299.99934 * 5 4 2 36 36 H 1.09000 * 109.47033 * 59.99886 * 5 4 2 37 37 H 0.96996 * 120.00269 * 359.97438 * 8 6 5 38 38 H 0.97002 * 120.00022 * 179.97438 * 12 11 9 39 39 H 1.08998 * 109.46416 * 180.02562 * 17 2 1 40 40 H 1.08996 * 109.49385 * 298.56834 * 18 17 2 41 41 H 1.09002 * 109.49467 * 58.66281 * 18 17 2 42 42 H 1.08999 * 109.59726 * 294.87305 * 19 18 17 43 43 H 1.08993 * 109.70168 * 174.50643 * 19 18 17 44 44 H 1.09004 * 117.50205 * 214.97931 * 25 23 21 45 45 H 1.09004 * 117.50044 * 359.97438 * 25 23 21 46 46 H 1.09005 * 109.47289 * 351.37568 * 28 26 25 47 47 H 1.08996 * 109.47466 * 111.38166 * 28 26 25 48 48 H 1.09005 * 109.47087 * 231.38107 * 28 26 25 49 49 H 1.09006 * 109.58065 * 293.81467 * 29 20 19 50 50 H 1.09003 * 109.58782 * 173.39477 * 29 20 19 51 51 H 1.09002 * 109.49242 * 301.33946 * 30 17 2 52 52 H 1.09000 * 109.50070 * 61.39420 * 30 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6926 -1.1993 5 6 2.0826 0.2224 -2.3469 6 6 2.5887 -0.5217 -3.5556 7 8 2.8690 -1.6987 -3.4697 8 7 2.7298 0.1206 -4.7320 9 6 3.1898 -0.5566 -5.8318 10 1 3.4394 -1.6045 -5.7554 11 6 3.3348 0.1054 -7.0448 12 7 3.0307 1.3805 -7.1380 13 14 3.9622 -0.8171 -8.5432 14 1 4.2306 -2.2311 -8.1774 15 1 2.9385 -0.7700 -9.6178 16 1 5.2157 -0.1836 -9.0255 17 6 2.0400 -0.7211 1.2493 18 6 1.5302 -2.1642 1.2488 19 6 2.0713 -2.8931 2.4828 20 7 1.7085 -2.1256 3.6820 21 6 1.0557 -2.7152 4.7032 22 8 0.7622 -2.0710 5.6878 23 6 0.6907 -4.1751 4.6214 24 1 0.4331 -4.5403 3.6273 25 6 1.4176 -5.1388 5.5616 26 6 -0.0497 -4.7859 5.8129 27 1 -0.2729 -4.1319 6.6558 28 6 -1.0957 -5.8628 5.5178 29 6 2.0709 -0.7032 3.7470 30 6 1.5302 0.0009 2.4987 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5137 -0.8901 34 1 1.4496 -1.4981 -1.4099 35 1 1.0871 0.6161 -2.5526 36 1 2.7589 1.0461 -2.1182 37 1 2.5053 1.0617 -4.8008 38 1 3.1323 1.8427 -7.9847 39 1 3.1300 -0.7206 1.2495 40 1 0.4406 -2.1651 1.2742 41 1 1.8741 -2.6712 0.3472 42 1 3.1563 -2.9722 2.4142 43 1 1.6351 -3.8902 2.5413 44 1 1.6378 -6.1381 5.1861 45 1 2.1602 -4.7170 6.2389 46 1 -0.6195 -6.7033 5.0130 47 1 -1.5392 -6.2046 6.4530 48 1 -1.8738 -5.4477 4.8771 49 1 3.1559 -0.6039 3.7815 50 1 1.6324 -0.2547 4.6384 51 1 1.8739 1.0353 2.4867 52 1 0.4405 -0.0201 2.5119 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567628387.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:16 Heat of formation + Delta-G solvation = -57.409898 kcal Electronic energy + Delta-G solvation = -29333.546243 eV Core-core repulsion = 25333.124645 eV Total energy + Delta-G solvation = -4000.421598 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.70740 -39.04830 -38.12049 -37.04282 -35.94094 -33.96659 -32.87562 -31.40350 -31.19417 -29.68472 -28.98384 -26.51121 -25.96221 -24.53609 -23.68035 -23.39797 -21.84008 -21.04887 -19.76642 -19.26783 -18.82451 -17.91551 -17.55263 -16.39843 -16.16005 -15.58638 -15.39338 -14.93302 -14.77272 -14.68199 -14.49909 -14.30775 -14.03303 -13.85440 -13.74581 -13.55250 -13.43326 -13.11731 -12.99148 -12.42806 -12.39148 -12.35341 -12.27350 -12.10807 -11.81905 -11.67557 -11.58785 -11.51966 -11.12677 -11.07619 -10.84369 -10.72323 -10.58430 -10.40031 -10.35487 -10.29031 -10.22798 -9.92701 -9.53068 -8.87138 -8.45447 -8.03677 -7.96191 -6.42899 -3.83684 2.24333 2.70722 3.15222 3.25827 3.32941 3.45600 3.90233 4.06586 4.11788 4.28352 4.37000 4.40735 4.52010 4.68446 4.70964 4.84885 4.90764 4.94757 5.01962 5.09308 5.15736 5.23045 5.24554 5.27456 5.31454 5.34026 5.37839 5.40642 5.43912 5.54775 5.60426 5.66602 5.68620 5.70841 5.76864 5.82846 5.88947 5.90637 5.94308 6.04728 6.06370 6.11990 6.27354 6.36339 6.38627 7.16850 7.25488 7.54235 7.67858 7.95380 8.05620 8.60217 9.16928 9.53589 10.04864 10.74900 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021717 B = 0.001872 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.009789 B =14952.452802 C =15675.712223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.088 3.912 3 H 0.077 0.923 4 N -0.662 5.662 5 C 0.050 3.950 6 C 0.441 3.559 7 O -0.584 6.584 8 N -0.565 5.565 9 C -0.298 4.298 10 H 0.103 0.897 11 C 0.021 3.979 12 N -0.902 5.902 13 Si 0.929 3.071 14 H -0.268 1.268 15 H -0.282 1.282 16 H -0.281 1.281 17 C -0.072 4.072 18 C -0.133 4.133 19 C 0.107 3.893 20 N -0.605 5.605 21 C 0.545 3.455 22 O -0.548 6.548 23 C -0.193 4.193 24 H 0.126 0.874 25 C -0.148 4.148 26 C -0.123 4.123 27 H 0.116 0.884 28 C -0.124 4.124 29 C 0.112 3.888 30 C -0.131 4.131 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.348 0.652 35 H 0.042 0.958 36 H 0.085 0.915 37 H 0.392 0.608 38 H 0.271 0.729 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.089 0.911 42 H 0.072 0.928 43 H 0.085 0.915 44 H 0.105 0.895 45 H 0.098 0.902 46 H 0.058 0.942 47 H 0.064 0.936 48 H 0.062 0.938 49 H 0.067 0.933 50 H 0.090 0.910 51 H 0.075 0.925 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.115 -6.645 23.293 24.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.022 4.022 3 H 0.095 0.905 4 N -0.294 5.294 5 C -0.082 4.082 6 C 0.227 3.773 7 O -0.468 6.468 8 N -0.201 5.201 9 C -0.428 4.428 10 H 0.121 0.879 11 C -0.180 4.180 12 N -0.543 5.543 13 Si 0.757 3.243 14 H -0.192 1.192 15 H -0.208 1.208 16 H -0.207 1.207 17 C -0.091 4.091 18 C -0.171 4.171 19 C -0.016 4.016 20 N -0.338 5.338 21 C 0.334 3.666 22 O -0.426 6.426 23 C -0.214 4.214 24 H 0.143 0.857 25 C -0.185 4.185 26 C -0.141 4.141 27 H 0.134 0.866 28 C -0.181 4.181 29 C -0.010 4.010 30 C -0.170 4.170 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.168 0.832 35 H 0.060 0.940 36 H 0.103 0.897 37 H 0.225 0.775 38 H 0.081 0.919 39 H 0.099 0.901 40 H 0.083 0.917 41 H 0.108 0.892 42 H 0.090 0.910 43 H 0.103 0.897 44 H 0.123 0.877 45 H 0.116 0.884 46 H 0.077 0.923 47 H 0.083 0.917 48 H 0.081 0.919 49 H 0.086 0.914 50 H 0.108 0.892 51 H 0.094 0.906 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.389 -6.889 23.835 25.389 hybrid contribution -0.724 0.490 -1.385 1.638 sum -6.114 -6.399 22.450 24.131 Atomic orbital electron populations 1.22630 0.97756 1.02238 1.02002 1.21563 0.92268 0.97815 0.90587 0.90509 1.60195 1.57597 1.09060 1.02521 1.21699 0.99804 0.95770 0.90962 1.19837 0.85075 0.88233 0.84191 1.90513 1.55360 1.16297 1.84645 1.41879 1.57785 1.12468 1.07992 1.19750 1.39854 0.96457 0.86752 0.87875 1.25269 0.97696 0.95788 0.99270 1.69623 1.48748 1.08869 1.27082 0.85801 0.78244 0.79626 0.80676 1.19220 1.20795 1.20743 1.21087 1.01049 0.94252 0.92754 1.22024 1.00875 0.96253 0.97914 1.21855 1.00673 0.95121 0.83934 1.48060 1.57019 1.10892 1.17815 1.19659 0.76733 0.88027 0.82201 1.90666 1.54725 1.65432 1.31822 1.22354 1.08840 0.92184 0.98039 0.85658 1.23098 0.95659 0.98940 1.00828 1.22379 0.93175 1.00232 0.98336 0.86603 1.21407 0.97806 0.96896 1.02014 1.21606 0.99891 0.80169 0.99331 1.22043 1.01474 0.99457 0.94019 0.92218 0.92075 0.92737 0.83164 0.93967 0.89717 0.77486 0.91937 0.90110 0.91653 0.89213 0.90954 0.89662 0.87694 0.88357 0.92257 0.91669 0.91906 0.91430 0.89200 0.90640 0.91281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.93 8.46 37.16 0.31 -1.61 16 2 C 0.09 0.99 2.42 -67.71 -0.16 0.83 16 3 H 0.08 0.87 7.80 -51.93 -0.40 0.46 16 4 N -0.66 -9.92 5.39 -107.99 -0.58 -10.50 16 5 C 0.05 0.86 5.97 -4.97 -0.03 0.83 16 6 C 0.44 10.23 7.82 -10.99 -0.09 10.14 16 7 O -0.58 -15.53 15.78 5.55 0.09 -15.44 16 8 N -0.56 -14.18 5.29 -10.97 -0.06 -14.24 16 9 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 10 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 11 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 12 N -0.90 -24.43 13.05 55.50 0.72 -23.71 16 13 Si 0.93 20.93 29.55 -169.99 -5.02 15.90 16 14 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 15 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 16 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 17 C -0.07 -0.71 2.17 -90.57 -0.20 -0.91 16 18 C -0.13 -1.23 4.72 -26.61 -0.13 -1.36 16 19 C 0.11 0.89 6.35 -3.71 -0.02 0.86 16 20 N -0.61 -5.89 2.97 -172.77 -0.51 -6.40 16 21 C 0.55 6.08 7.48 -10.98 -0.08 6.00 16 22 O -0.55 -7.95 15.67 5.56 0.09 -7.87 16 23 C -0.19 -1.61 4.85 -91.77 -0.44 -2.05 16 24 H 0.13 0.86 6.57 -51.93 -0.34 0.52 16 25 C -0.15 -1.03 9.88 -26.73 -0.26 -1.30 16 26 C -0.12 -0.96 5.92 -90.62 -0.54 -1.49 16 27 H 0.12 1.08 7.67 -51.93 -0.40 0.69 16 28 C -0.12 -0.72 10.19 37.16 0.38 -0.35 16 29 C 0.11 1.05 6.43 -3.71 -0.02 1.03 16 30 C -0.13 -1.14 4.97 -26.62 -0.13 -1.28 16 31 H 0.06 0.61 6.45 -51.93 -0.33 0.27 16 32 H 0.06 0.56 6.46 -51.93 -0.34 0.22 16 33 H 0.05 0.60 7.45 -51.93 -0.39 0.21 16 34 H 0.35 5.44 7.39 -39.29 -0.29 5.15 16 35 H 0.04 0.66 7.44 -51.93 -0.39 0.27 16 36 H 0.08 1.35 8.06 -51.93 -0.42 0.93 16 37 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 38 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 39 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.06 0.61 6.51 -51.93 -0.34 0.27 16 41 H 0.09 0.95 7.14 -51.93 -0.37 0.58 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.09 0.58 5.51 -51.93 -0.29 0.30 16 44 H 0.10 0.55 8.05 -51.93 -0.42 0.13 16 45 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.06 0.29 7.90 -51.93 -0.41 -0.12 16 47 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 50 H 0.09 0.95 7.01 -51.93 -0.36 0.58 16 51 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 52 H 0.07 0.64 6.51 -51.93 -0.34 0.30 16 LS Contribution 406.07 15.07 6.12 6.12 Total: -1.00 -32.38 406.07 -9.43 -41.81 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: -8.61 Total: 12.93 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -1.66 Total: 1.40 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: -0.43 Total: -54.85 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: 0.17 Total: -23.31 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.38 -9.43 -41.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567628387.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.604 kcal (2) G-P(sol) polarization free energy of solvation -32.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds