Wall clock time and date at job start Tue Mar 31 2020 22:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46948 * 2 1 4 4 N 1.46898 * 109.47420 * 239.99390 * 2 1 3 5 5 C 1.46906 * 110.99888 * 85.00182 * 4 2 1 6 6 C 1.50699 * 109.47140 * 179.97438 * 5 4 2 7 7 O 1.21289 * 119.99678 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99614 * 180.02562 * 6 5 4 9 9 C 1.37097 * 119.99518 * 180.02562 * 8 6 5 10 10 H 1.07996 * 120.00466 * 359.97438 * 9 8 6 11 11 C 1.38949 * 120.00085 * 179.97438 * 9 8 6 12 12 N 1.31416 * 119.99807 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00303 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46948 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46809 * 120.00147 * 13 11 9 16 16 H 1.48497 * 109.47378 * 239.99941 * 13 11 9 17 17 C 1.53001 * 109.47100 * 119.99305 * 2 1 3 18 18 C 1.53050 * 109.45803 * 60.02891 * 17 2 1 19 19 C 1.53192 * 109.31251 * 178.60032 * 18 17 2 20 20 N 1.46924 * 108.76369 * 54.65428 * 19 18 17 21 21 C 1.34781 * 120.62857 * 126.40333 * 20 19 18 22 22 O 1.21275 * 119.99949 * 179.97438 * 21 20 19 23 23 C 1.50699 * 119.99923 * 359.97438 * 21 20 19 24 24 H 1.08998 * 115.55356 * 325.72654 * 23 21 20 25 25 C 1.53004 * 117.49765 * 111.38907 * 23 21 20 26 26 C 1.52996 * 59.99973 * 107.48956 * 25 23 21 27 27 H 1.09001 * 117.50141 * 252.51355 * 26 25 23 28 28 C 1.52999 * 117.49696 * 107.48984 * 26 25 23 29 29 C 1.46928 * 118.74392 * 306.38861 * 20 19 18 30 30 C 1.53041 * 109.46362 * 299.97891 * 17 2 1 31 31 H 1.09002 * 109.46948 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47372 * 300.00433 * 1 2 3 33 33 H 1.09000 * 109.47137 * 60.01031 * 1 2 3 34 34 H 1.00901 * 111.00121 * 321.04769 * 4 2 1 35 35 H 1.09004 * 109.47040 * 299.99934 * 5 4 2 36 36 H 1.09000 * 109.47033 * 59.99886 * 5 4 2 37 37 H 0.96996 * 120.00269 * 359.97438 * 8 6 5 38 38 H 0.97002 * 120.00022 * 179.97438 * 12 11 9 39 39 H 1.08998 * 109.46416 * 180.02562 * 17 2 1 40 40 H 1.08996 * 109.49385 * 298.56834 * 18 17 2 41 41 H 1.09002 * 109.49467 * 58.66281 * 18 17 2 42 42 H 1.08999 * 109.59726 * 294.87305 * 19 18 17 43 43 H 1.08993 * 109.70168 * 174.50643 * 19 18 17 44 44 H 1.09004 * 117.50205 * 214.97931 * 25 23 21 45 45 H 1.09004 * 117.50044 * 359.97438 * 25 23 21 46 46 H 1.09005 * 109.47289 * 351.37568 * 28 26 25 47 47 H 1.08996 * 109.47466 * 111.38166 * 28 26 25 48 48 H 1.09005 * 109.47087 * 231.38107 * 28 26 25 49 49 H 1.09006 * 109.58065 * 293.81467 * 29 20 19 50 50 H 1.09003 * 109.58782 * 173.39477 * 29 20 19 51 51 H 1.09002 * 109.49242 * 301.33946 * 30 17 2 52 52 H 1.09000 * 109.50070 * 61.39420 * 30 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6926 -1.1993 5 6 2.0826 0.2224 -2.3469 6 6 2.5887 -0.5217 -3.5556 7 8 2.8690 -1.6987 -3.4697 8 7 2.7298 0.1206 -4.7320 9 6 3.1898 -0.5566 -5.8318 10 1 3.4394 -1.6045 -5.7554 11 6 3.3348 0.1054 -7.0448 12 7 3.0307 1.3805 -7.1380 13 14 3.9622 -0.8171 -8.5432 14 1 4.2306 -2.2311 -8.1774 15 1 2.9385 -0.7700 -9.6178 16 1 5.2157 -0.1836 -9.0255 17 6 2.0400 -0.7211 1.2493 18 6 1.5302 -2.1642 1.2488 19 6 2.0713 -2.8931 2.4828 20 7 1.7085 -2.1256 3.6820 21 6 1.0557 -2.7152 4.7032 22 8 0.7622 -2.0710 5.6878 23 6 0.6907 -4.1751 4.6214 24 1 0.4331 -4.5403 3.6273 25 6 1.4176 -5.1388 5.5616 26 6 -0.0497 -4.7859 5.8129 27 1 -0.2729 -4.1319 6.6558 28 6 -1.0957 -5.8628 5.5178 29 6 2.0709 -0.7032 3.7470 30 6 1.5302 0.0009 2.4987 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5137 -0.8901 34 1 1.4496 -1.4981 -1.4099 35 1 1.0871 0.6161 -2.5526 36 1 2.7589 1.0461 -2.1182 37 1 2.5053 1.0617 -4.8008 38 1 3.1323 1.8427 -7.9847 39 1 3.1300 -0.7206 1.2495 40 1 0.4406 -2.1651 1.2742 41 1 1.8741 -2.6712 0.3472 42 1 3.1563 -2.9722 2.4142 43 1 1.6351 -3.8902 2.5413 44 1 1.6378 -6.1381 5.1861 45 1 2.1602 -4.7170 6.2389 46 1 -0.6195 -6.7033 5.0130 47 1 -1.5392 -6.2046 6.4530 48 1 -1.8738 -5.4477 4.8771 49 1 3.1559 -0.6039 3.7815 50 1 1.6324 -0.2547 4.6384 51 1 1.8739 1.0353 2.4867 52 1 0.4405 -0.0201 2.5119 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567628387.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:15 Heat of formation + Delta-G solvation = -78.415486 kcal Electronic energy + Delta-G solvation = -29334.457113 eV Core-core repulsion = 25333.124645 eV Total energy + Delta-G solvation = -4001.332469 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.42 seconds Orbital eigenvalues (eV) -41.50712 -40.28847 -39.51826 -37.81812 -36.97309 -35.91519 -33.95167 -33.21857 -32.13833 -30.65631 -29.54722 -27.98396 -26.86423 -25.89795 -24.76441 -24.17317 -22.63392 -21.67884 -21.11686 -20.51877 -19.90392 -19.60970 -18.36235 -17.73989 -17.21402 -16.87213 -16.36801 -16.34377 -16.03662 -15.79244 -15.56585 -15.43424 -15.02953 -14.93586 -14.78512 -14.56615 -14.20766 -14.08609 -13.87110 -13.59289 -13.54752 -13.32674 -13.16787 -13.08438 -12.97249 -12.88226 -12.73941 -12.57025 -12.39640 -12.31227 -12.11116 -11.89191 -11.73402 -11.50394 -11.39518 -11.33166 -11.18530 -10.92266 -10.74774 -10.31720 -10.00314 -9.67582 -9.23013 -8.46067 -5.94583 1.37116 1.42431 1.44119 1.56532 1.96131 2.06909 2.29660 2.83384 2.93893 3.21488 3.43969 3.54275 3.72065 3.79446 3.84856 3.89821 4.01025 4.11065 4.15566 4.26837 4.31900 4.36656 4.40526 4.41492 4.48584 4.50833 4.61081 4.65139 4.69361 4.72024 4.83413 4.86694 4.91645 4.94221 4.94494 5.00707 5.05710 5.11227 5.14038 5.20952 5.25449 5.29099 5.41517 5.42062 5.56832 5.60158 5.93694 6.16588 6.38063 6.48632 6.61155 7.12785 7.13708 7.57850 8.12843 8.71527 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021717 B = 0.001872 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.009789 B =14952.452802 C =15675.712223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.091 3.909 3 H 0.082 0.918 4 N -0.671 5.671 5 C 0.065 3.935 6 C 0.439 3.561 7 O -0.621 6.621 8 N -0.575 5.575 9 C -0.332 4.332 10 H 0.079 0.921 11 C -0.015 4.015 12 N -0.921 5.921 13 Si 0.993 3.007 14 H -0.273 1.273 15 H -0.271 1.271 16 H -0.272 1.272 17 C -0.067 4.067 18 C -0.128 4.128 19 C 0.108 3.892 20 N -0.603 5.603 21 C 0.537 3.463 22 O -0.591 6.591 23 C -0.200 4.200 24 H 0.144 0.856 25 C -0.135 4.135 26 C -0.129 4.129 27 H 0.093 0.907 28 C -0.120 4.120 29 C 0.110 3.890 30 C -0.120 4.120 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.047 0.953 34 H 0.344 0.656 35 H 0.062 0.938 36 H 0.101 0.899 37 H 0.396 0.604 38 H 0.277 0.723 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.103 0.897 44 H 0.130 0.870 45 H 0.088 0.912 46 H 0.073 0.927 47 H 0.070 0.930 48 H 0.061 0.939 49 H 0.075 0.925 50 H 0.076 0.924 51 H 0.088 0.912 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.310 -7.117 23.222 25.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.019 4.019 3 H 0.100 0.900 4 N -0.303 5.303 5 C -0.067 4.067 6 C 0.226 3.774 7 O -0.508 6.508 8 N -0.212 5.212 9 C -0.461 4.461 10 H 0.097 0.903 11 C -0.214 4.214 12 N -0.562 5.562 13 Si 0.817 3.183 14 H -0.197 1.197 15 H -0.197 1.197 16 H -0.197 1.197 17 C -0.086 4.086 18 C -0.166 4.166 19 C -0.013 4.013 20 N -0.334 5.334 21 C 0.328 3.672 22 O -0.472 6.472 23 C -0.221 4.221 24 H 0.162 0.838 25 C -0.173 4.173 26 C -0.147 4.147 27 H 0.111 0.889 28 C -0.177 4.177 29 C -0.012 4.012 30 C -0.159 4.159 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.066 0.934 34 H 0.163 0.837 35 H 0.080 0.920 36 H 0.119 0.881 37 H 0.229 0.771 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.121 0.879 44 H 0.148 0.852 45 H 0.107 0.893 46 H 0.092 0.908 47 H 0.089 0.911 48 H 0.080 0.920 49 H 0.094 0.906 50 H 0.095 0.905 51 H 0.106 0.894 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.586 -7.335 23.763 25.489 hybrid contribution -0.654 0.655 -1.296 1.593 sum -6.240 -6.681 22.467 24.255 Atomic orbital electron populations 1.22561 0.96707 1.02416 1.02357 1.21630 0.93056 0.97841 0.89374 0.89987 1.60206 1.58416 1.08968 1.02734 1.21548 1.00770 0.95484 0.88926 1.20906 0.83310 0.88029 0.85120 1.90482 1.56575 1.18250 1.85447 1.41956 1.58400 1.12609 1.08280 1.19704 1.41965 0.95957 0.88510 0.90253 1.26046 0.97322 0.96630 1.01426 1.69682 1.48780 1.09714 1.28054 0.84869 0.78121 0.78080 0.77263 1.19708 1.19673 1.19704 1.21016 1.00463 0.94615 0.92493 1.21952 1.00949 0.95889 0.97787 1.21932 1.01004 0.95653 0.82756 1.48154 1.56270 1.11100 1.17879 1.20185 0.76219 0.89101 0.81742 1.90643 1.56525 1.66611 1.33438 1.22405 1.09833 0.90623 0.99190 0.83832 1.23181 0.94803 0.99517 0.99759 1.22395 0.94430 1.00502 0.97414 0.88873 1.21400 0.97228 0.96544 1.02495 1.21631 1.00314 0.80221 0.99078 1.21947 1.01155 0.99896 0.92884 0.92173 0.90677 0.93370 0.83678 0.91992 0.88081 0.77055 0.91367 0.90993 0.91435 0.90418 0.90584 0.87851 0.85226 0.89312 0.90848 0.91072 0.92039 0.90638 0.90547 0.89383 0.91530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.37 8.46 71.98 0.61 -2.76 16 2 C 0.09 1.88 2.42 44.92 0.11 1.98 16 3 H 0.08 1.65 7.80 -2.39 -0.02 1.63 16 4 N -0.67 -19.34 5.39 -495.56 -2.67 -22.01 16 5 C 0.07 2.14 5.97 85.56 0.51 2.65 16 6 C 0.44 20.41 7.82 87.66 0.69 21.10 16 7 O -0.62 -33.56 15.78 -3.06 -0.05 -33.61 16 8 N -0.58 -29.18 5.29 -306.99 -1.62 -30.81 16 9 C -0.33 -18.70 9.68 84.04 0.81 -17.88 16 10 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 11 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 12 N -0.92 -49.47 13.05 21.66 0.28 -49.18 16 13 Si 0.99 42.63 29.55 68.60 2.03 44.66 16 14 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 15 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 16 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 17 C -0.07 -1.21 2.17 -10.76 -0.02 -1.23 16 18 C -0.13 -2.19 4.72 30.68 0.14 -2.05 16 19 C 0.11 1.63 6.35 86.36 0.55 2.17 16 20 N -0.60 -11.15 2.97 -818.93 -2.43 -13.59 16 21 C 0.54 11.79 7.48 87.66 0.66 12.44 16 22 O -0.59 -17.57 15.67 -3.02 -0.05 -17.61 16 23 C -0.20 -3.07 4.85 -11.54 -0.06 -3.13 16 24 H 0.14 1.64 6.57 -2.39 -0.02 1.62 16 25 C -0.14 -1.69 9.88 30.59 0.30 -1.38 16 26 C -0.13 -1.91 5.92 -10.80 -0.06 -1.97 16 27 H 0.09 1.81 7.67 -2.39 -0.02 1.79 16 28 C -0.12 -1.20 10.19 71.98 0.73 -0.46 16 29 C 0.11 1.98 6.43 86.36 0.56 2.53 16 30 C -0.12 -1.90 4.97 30.67 0.15 -1.75 16 31 H 0.06 1.12 6.45 -2.39 -0.02 1.10 16 32 H 0.07 1.20 6.46 -2.39 -0.02 1.18 16 33 H 0.05 0.96 7.45 -2.39 -0.02 0.94 16 34 H 0.34 10.49 7.39 -89.69 -0.66 9.82 16 35 H 0.06 1.82 7.44 -2.38 -0.02 1.80 16 36 H 0.10 3.03 8.06 -2.39 -0.02 3.01 16 37 H 0.40 19.12 7.90 -92.71 -0.73 18.38 16 38 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 39 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.07 1.14 6.51 -2.39 -0.02 1.13 16 41 H 0.08 1.57 7.14 -2.39 -0.02 1.55 16 42 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.10 1.18 5.51 -2.39 -0.01 1.17 16 44 H 0.13 0.98 8.05 -2.38 -0.02 0.96 16 45 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 46 H 0.07 0.53 7.90 -2.38 -0.02 0.52 16 47 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 48 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 49 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 50 H 0.08 1.62 7.01 -2.39 -0.02 1.60 16 51 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 52 H 0.07 1.11 6.51 -2.39 -0.02 1.10 16 Total: -1.00 -70.79 406.07 1.18 -69.62 By element: Atomic # 1 Polarization: 43.04 SS G_CDS: -0.46 Total: 42.58 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: 6.14 Total: 9.95 kcal Atomic # 7 Polarization: -109.15 SS G_CDS: -6.44 Total: -115.59 kcal Atomic # 8 Polarization: -51.12 SS G_CDS: -0.10 Total: -51.22 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -70.79 1.18 -69.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567628387.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.797 kcal (2) G-P(sol) polarization free energy of solvation -70.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.42 seconds