Wall clock time and date at job start Tue Mar 31 2020 22:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 115.55064 * 2 1 4 4 C 1.53000 * 117.49920 * 214.33219 * 2 1 3 5 5 C 1.53002 * 60.02940 * 252.47484 * 4 2 1 6 6 H 1.09000 * 117.49996 * 107.50493 * 5 4 2 7 7 C 1.50706 * 117.49668 * 252.51929 * 5 4 2 8 8 O 1.21277 * 120.00023 * 68.61167 * 7 5 4 9 9 N 1.34780 * 119.99945 * 248.60941 * 7 5 4 10 10 C 1.46496 * 119.99685 * 180.02562 * 9 7 5 11 11 C 1.52999 * 109.46924 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.50262 * 59.92499 * 11 10 9 13 13 C 1.53116 * 109.50606 * 299.80200 * 11 10 9 14 14 C 1.53116 * 109.16350 * 182.40123 * 13 11 10 15 15 C 1.53046 * 109.27667 * 57.65739 * 14 13 11 16 16 N 1.46841 * 109.52192 * 300.82105 * 15 14 13 17 17 C 1.46900 * 111.00171 * 185.83808 * 16 15 14 18 18 C 1.50701 * 109.47031 * 65.78673 * 17 16 15 19 19 O 1.21297 * 120.00118 * 0.02562 * 18 17 16 20 20 N 1.34779 * 120.00117 * 180.02562 * 18 17 16 21 21 C 1.37092 * 119.99830 * 180.02562 * 20 18 17 22 22 H 1.08001 * 120.00656 * 0.02562 * 21 20 18 23 23 C 1.38954 * 119.99618 * 180.02562 * 21 20 18 24 24 N 1.31406 * 120.00217 * 0.02562 * 23 21 20 25 25 Si 1.86808 * 119.99734 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46912 * 359.97438 * 25 23 21 27 27 H 1.48495 * 109.47043 * 120.00449 * 25 23 21 28 28 H 1.48500 * 109.46905 * 240.00124 * 25 23 21 29 29 C 1.46851 * 111.20058 * 61.74244 * 16 15 14 30 30 H 1.09001 * 109.47296 * 154.27542 * 1 2 3 31 31 H 1.09007 * 109.46973 * 274.28028 * 1 2 3 32 32 H 1.09008 * 109.47059 * 34.27409 * 1 2 3 33 33 H 1.09002 * 117.49833 * 359.97438 * 4 2 1 34 34 H 1.09002 * 117.49953 * 144.97630 * 4 2 1 35 35 H 0.96998 * 119.99800 * 0.02562 * 9 7 5 36 36 H 1.09005 * 109.47246 * 299.99790 * 10 9 7 37 37 H 1.09002 * 109.47282 * 60.00254 * 10 9 7 38 38 H 1.09000 * 109.47841 * 59.99782 * 12 11 10 39 39 H 1.09004 * 109.47382 * 180.02562 * 12 11 10 40 40 H 1.09003 * 109.47036 * 299.99798 * 12 11 10 41 41 H 1.08993 * 109.52292 * 302.31122 * 13 11 10 42 42 H 1.09010 * 109.52070 * 62.49843 * 13 11 10 43 43 H 1.08995 * 109.50559 * 297.71998 * 14 13 11 44 44 H 1.08994 * 109.53551 * 177.61487 * 14 13 11 45 45 H 1.08991 * 109.45921 * 180.80261 * 15 14 13 46 46 H 1.08997 * 109.46054 * 60.83426 * 15 14 13 47 47 H 1.09003 * 109.47247 * 185.78925 * 17 16 15 48 48 H 1.08999 * 109.46971 * 305.78933 * 17 16 15 49 49 H 0.96998 * 119.99807 * 0.02562 * 20 18 17 50 50 H 0.97000 * 119.99933 * 180.02562 * 24 23 21 51 51 H 1.09003 * 109.46000 * 178.24618 * 29 16 15 52 52 H 1.08994 * 109.45457 * 58.26354 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2364 -1.1207 -0.7654 5 6 2.2375 -1.1215 0.7646 6 1 1.6131 -1.8596 1.2680 7 6 3.5307 -0.7813 1.4597 8 8 3.9728 0.3464 1.4001 9 7 4.1960 -1.7305 2.1474 10 6 5.4528 -1.3997 2.8235 11 6 5.9978 -2.6453 3.5251 12 6 6.2475 -3.7455 2.4915 13 6 4.9808 -3.1357 4.5593 14 6 5.5589 -4.3459 5.2981 15 6 6.8847 -3.9518 5.9533 16 7 7.8234 -3.4906 4.9226 17 6 9.1514 -3.2350 5.4964 18 6 9.7484 -4.5320 5.9785 19 8 9.1289 -5.5676 5.8557 20 7 10.9708 -4.5414 6.5461 21 6 11.5141 -5.7214 6.9841 22 1 10.9629 -6.6436 6.8740 23 6 12.7742 -5.7309 7.5698 24 7 13.4448 -4.6088 7.7042 25 14 13.5149 -7.3389 8.1660 26 1 12.5653 -8.4495 7.9011 27 1 14.7888 -7.5938 7.4468 28 1 13.7790 -7.2514 9.6247 29 6 7.3108 -2.3006 4.2317 30 1 -0.3634 -0.9258 -0.4461 31 1 -0.3633 0.0767 1.0249 32 1 -0.3633 0.8493 -0.5788 33 1 1.6112 -1.8583 -1.2686 34 1 3.1711 -0.8745 -1.2692 35 1 3.8427 -2.6326 2.1947 36 1 6.1786 -1.0486 2.0899 37 1 5.2738 -0.6170 3.5608 38 1 6.9729 -3.3961 1.7568 39 1 6.6353 -4.6329 2.9919 40 1 5.3118 -3.9916 1.9896 41 1 4.7735 -2.3382 5.2728 42 1 4.0582 -3.4234 4.0550 43 1 5.7298 -5.1568 4.5902 44 1 4.8574 -4.6739 6.0650 45 1 7.3060 -4.8151 6.4682 46 1 6.7109 -3.1502 6.6711 47 1 9.7980 -2.7980 4.7355 48 1 9.0582 -2.5443 6.3345 49 1 11.4661 -3.7132 6.6446 50 1 14.3246 -4.6156 8.1127 51 1 8.0418 -1.9647 3.4961 52 1 7.1350 -1.5068 4.9576 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569719079.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:17 Heat of formation + Delta-G solvation = -57.028029 kcal Electronic energy + Delta-G solvation = -29491.624193 eV Core-core repulsion = 25491.219154 eV Total energy + Delta-G solvation = -4000.405039 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.53386 -39.60718 -38.06653 -37.10866 -35.48117 -33.93021 -33.09648 -31.77735 -31.17924 -29.24800 -27.62018 -27.16121 -26.40622 -24.72417 -23.82697 -22.85355 -21.48684 -21.08030 -20.27689 -19.15790 -18.48082 -17.90737 -17.65566 -16.34507 -15.88924 -15.62243 -15.53937 -14.98934 -14.73053 -14.66641 -14.54687 -14.20915 -14.07986 -13.75072 -13.71778 -13.56825 -13.38039 -13.16043 -12.91632 -12.66660 -12.43186 -12.30338 -12.15653 -11.81924 -11.65300 -11.55260 -11.37598 -11.24413 -11.05224 -10.99891 -10.77018 -10.55662 -10.49438 -10.35215 -10.28250 -10.22950 -10.19755 -10.01937 -9.46810 -9.26300 -8.41135 -7.96784 -7.81086 -6.41401 -3.82075 2.24863 2.85967 3.16209 3.26803 3.33732 3.43966 3.91015 3.97523 4.23472 4.28791 4.35464 4.40967 4.55772 4.63833 4.72814 4.80521 4.90493 5.04356 5.18507 5.22714 5.24871 5.25885 5.30075 5.33423 5.36226 5.46062 5.52527 5.57959 5.62941 5.63567 5.64595 5.71738 5.78352 5.89575 5.90450 5.90760 5.96231 5.99684 6.05952 6.15436 6.24658 6.29457 6.35522 6.54685 6.60308 7.26275 7.32509 7.44860 7.55685 8.00052 8.07270 8.62456 9.18751 9.55425 10.07118 10.76425 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.036604 B = 0.001804 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.757856 B =15518.873641 C =15742.054316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.122 4.122 3 H 0.117 0.883 4 C -0.149 4.149 5 C -0.193 4.193 6 H 0.122 0.878 7 C 0.541 3.459 8 O -0.543 6.543 9 N -0.720 5.720 10 C 0.130 3.870 11 C -0.066 4.066 12 C -0.134 4.134 13 C -0.109 4.109 14 C -0.114 4.114 15 C 0.051 3.949 16 N -0.510 5.510 17 C 0.046 3.954 18 C 0.445 3.555 19 O -0.577 6.577 20 N -0.565 5.565 21 C -0.298 4.298 22 H 0.104 0.896 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 C 0.068 3.932 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.402 0.598 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.053 0.947 39 H 0.082 0.918 40 H 0.043 0.957 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.076 0.924 44 H 0.062 0.938 45 H 0.104 0.896 46 H 0.020 0.980 47 H 0.088 0.912 48 H 0.046 0.954 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.076 0.924 52 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.353 7.967 -12.498 26.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.141 4.141 3 H 0.135 0.865 4 C -0.186 4.186 5 C -0.214 4.214 6 H 0.140 0.860 7 C 0.327 3.673 8 O -0.421 6.421 9 N -0.372 5.372 10 C 0.006 3.994 11 C -0.067 4.067 12 C -0.192 4.192 13 C -0.147 4.147 14 C -0.152 4.152 15 C -0.077 4.077 16 N -0.234 5.234 17 C -0.085 4.085 18 C 0.230 3.770 19 O -0.461 6.461 20 N -0.202 5.202 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 C -0.061 4.061 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.123 0.877 34 H 0.118 0.882 35 H 0.237 0.763 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.101 0.899 40 H 0.062 0.938 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.094 0.906 44 H 0.081 0.919 45 H 0.122 0.878 46 H 0.038 0.962 47 H 0.106 0.894 48 H 0.064 0.936 49 H 0.225 0.775 50 H 0.080 0.920 51 H 0.094 0.906 52 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -22.188 7.725 -12.862 26.785 hybrid contribution 0.673 0.012 1.133 1.318 sum -21.515 7.737 -11.729 25.697 Atomic orbital electron populations 1.21407 0.92202 1.02265 1.02237 1.22388 0.95220 0.95095 1.01389 0.86501 1.23109 1.03194 1.01545 0.90751 1.22325 0.97816 1.05385 0.95881 0.85958 1.19659 0.84652 0.84695 0.78285 1.90698 1.68719 1.21139 1.61531 1.45953 1.24663 1.13451 1.53095 1.21390 0.85020 0.96834 0.96130 1.20786 0.95333 0.94757 0.95837 1.21810 1.00395 0.99407 0.97557 1.21665 0.97135 0.98487 0.97391 1.21585 0.95958 0.97839 0.99771 1.22273 0.92171 1.00860 0.92362 1.61440 1.01509 1.30998 1.29417 1.21835 0.90959 0.96885 0.98822 1.19734 0.83341 0.89953 0.83938 1.90479 1.61519 1.33722 1.60412 1.41879 1.14977 1.10553 1.52762 1.19742 0.99847 0.87897 1.35261 0.87866 1.25257 0.96509 0.98588 0.97616 1.69618 1.13845 1.26130 1.44725 0.85812 0.78864 0.81566 0.78165 1.19239 1.20771 1.20817 1.22011 0.95259 0.91384 0.97452 0.92319 0.91926 0.91635 0.87747 0.88239 0.76277 0.91253 0.91546 0.92812 0.89923 0.93836 0.92249 0.92329 0.90561 0.91926 0.87831 0.96212 0.89387 0.93571 0.77519 0.91952 0.90600 0.95010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 10.19 37.15 0.38 -0.26 16 2 C -0.12 -0.89 5.92 -90.59 -0.54 -1.42 16 3 H 0.12 1.05 7.67 -51.92 -0.40 0.65 16 4 C -0.15 -0.96 9.88 -26.73 -0.26 -1.22 16 5 C -0.19 -1.44 5.91 -91.73 -0.54 -1.98 16 6 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 7 C 0.54 5.68 7.61 -10.98 -0.08 5.60 16 8 O -0.54 -7.87 16.26 5.56 0.09 -7.78 16 9 N -0.72 -6.41 4.98 -60.29 -0.30 -6.71 16 10 C 0.13 1.32 4.57 -4.04 -0.02 1.30 16 11 C -0.07 -0.69 0.53 -154.43 -0.08 -0.77 16 12 C -0.13 -1.44 7.86 37.16 0.29 -1.15 16 13 C -0.11 -1.10 4.58 -26.61 -0.12 -1.22 16 14 C -0.11 -1.41 5.74 -26.65 -0.15 -1.56 16 15 C 0.05 0.79 5.11 -3.83 -0.02 0.77 16 16 N -0.51 -8.05 3.68 -236.11 -0.87 -8.92 16 17 C 0.05 0.81 5.45 -4.98 -0.03 0.78 16 18 C 0.44 10.27 7.46 -10.98 -0.08 10.19 16 19 O -0.58 -15.07 13.90 5.54 0.08 -14.99 16 20 N -0.57 -14.16 5.29 -10.96 -0.06 -14.22 16 21 C -0.30 -8.23 9.68 -14.93 -0.14 -8.37 16 22 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.47 13.05 55.50 0.72 -23.74 16 25 Si 0.93 20.95 29.55 -169.99 -5.02 15.93 16 26 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 29 C 0.07 0.85 4.18 -3.83 -0.02 0.83 16 30 H 0.06 0.25 7.90 -51.93 -0.41 -0.16 16 31 H 0.06 0.32 8.14 -51.92 -0.42 -0.10 16 32 H 0.06 0.30 8.14 -51.92 -0.42 -0.12 16 33 H 0.10 0.48 8.05 -51.93 -0.42 0.06 16 34 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.40 2.78 6.19 -40.82 -0.25 2.53 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 1.10 6.01 -51.93 -0.31 0.79 16 40 H 0.04 0.38 6.86 -51.93 -0.36 0.02 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.48 6.96 -51.92 -0.36 0.12 16 43 H 0.08 1.02 6.58 -51.93 -0.34 0.67 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.10 2.00 5.78 -51.93 -0.30 1.70 16 46 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 47 H 0.09 1.41 7.99 -51.93 -0.41 0.99 16 48 H 0.05 0.76 8.12 -51.93 -0.42 0.33 16 49 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 50 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 51 H 0.08 0.91 8.02 -51.93 -0.42 0.49 16 52 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 407.25 15.07 6.14 6.14 Total: -1.00 -32.07 407.25 -9.62 -41.69 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: -8.89 Total: 10.61 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: -1.52 Total: 2.00 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: -0.50 Total: -53.59 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: 0.17 Total: -22.77 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.07 -9.62 -41.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569719079.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.337 kcal (2) G-P(sol) polarization free energy of solvation -32.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds