Wall clock time and date at job start Tue Mar 31 2020 22:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 115.55064 * 2 1 4 4 C 1.53000 * 117.49920 * 214.33219 * 2 1 3 5 5 C 1.53002 * 60.02940 * 252.47484 * 4 2 1 6 6 H 1.09000 * 117.49996 * 107.50493 * 5 4 2 7 7 C 1.50706 * 117.49668 * 252.51929 * 5 4 2 8 8 O 1.21277 * 120.00023 * 68.61167 * 7 5 4 9 9 N 1.34780 * 119.99945 * 248.60941 * 7 5 4 10 10 C 1.46496 * 119.99685 * 180.02562 * 9 7 5 11 11 C 1.52999 * 109.46924 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.50262 * 59.92499 * 11 10 9 13 13 C 1.53116 * 109.50606 * 299.80200 * 11 10 9 14 14 C 1.53116 * 109.16350 * 182.40123 * 13 11 10 15 15 C 1.53046 * 109.27667 * 57.65739 * 14 13 11 16 16 N 1.46841 * 109.52192 * 300.82105 * 15 14 13 17 17 C 1.46900 * 111.00171 * 185.83808 * 16 15 14 18 18 C 1.50701 * 109.47031 * 65.78673 * 17 16 15 19 19 O 1.21297 * 120.00118 * 0.02562 * 18 17 16 20 20 N 1.34779 * 120.00117 * 180.02562 * 18 17 16 21 21 C 1.37092 * 119.99830 * 180.02562 * 20 18 17 22 22 H 1.08001 * 120.00656 * 0.02562 * 21 20 18 23 23 C 1.38954 * 119.99618 * 180.02562 * 21 20 18 24 24 N 1.31406 * 120.00217 * 0.02562 * 23 21 20 25 25 Si 1.86808 * 119.99734 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46912 * 359.97438 * 25 23 21 27 27 H 1.48495 * 109.47043 * 120.00449 * 25 23 21 28 28 H 1.48500 * 109.46905 * 240.00124 * 25 23 21 29 29 C 1.46851 * 111.20058 * 61.74244 * 16 15 14 30 30 H 1.09001 * 109.47296 * 154.27542 * 1 2 3 31 31 H 1.09007 * 109.46973 * 274.28028 * 1 2 3 32 32 H 1.09008 * 109.47059 * 34.27409 * 1 2 3 33 33 H 1.09002 * 117.49833 * 359.97438 * 4 2 1 34 34 H 1.09002 * 117.49953 * 144.97630 * 4 2 1 35 35 H 0.96998 * 119.99800 * 0.02562 * 9 7 5 36 36 H 1.09005 * 109.47246 * 299.99790 * 10 9 7 37 37 H 1.09002 * 109.47282 * 60.00254 * 10 9 7 38 38 H 1.09000 * 109.47841 * 59.99782 * 12 11 10 39 39 H 1.09004 * 109.47382 * 180.02562 * 12 11 10 40 40 H 1.09003 * 109.47036 * 299.99798 * 12 11 10 41 41 H 1.08993 * 109.52292 * 302.31122 * 13 11 10 42 42 H 1.09010 * 109.52070 * 62.49843 * 13 11 10 43 43 H 1.08995 * 109.50559 * 297.71998 * 14 13 11 44 44 H 1.08994 * 109.53551 * 177.61487 * 14 13 11 45 45 H 1.08991 * 109.45921 * 180.80261 * 15 14 13 46 46 H 1.08997 * 109.46054 * 60.83426 * 15 14 13 47 47 H 1.09003 * 109.47247 * 185.78925 * 17 16 15 48 48 H 1.08999 * 109.46971 * 305.78933 * 17 16 15 49 49 H 0.96998 * 119.99807 * 0.02562 * 20 18 17 50 50 H 0.97000 * 119.99933 * 180.02562 * 24 23 21 51 51 H 1.09003 * 109.46000 * 178.24618 * 29 16 15 52 52 H 1.08994 * 109.45457 * 58.26354 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2364 -1.1207 -0.7654 5 6 2.2375 -1.1215 0.7646 6 1 1.6131 -1.8596 1.2680 7 6 3.5307 -0.7813 1.4597 8 8 3.9728 0.3464 1.4001 9 7 4.1960 -1.7305 2.1474 10 6 5.4528 -1.3997 2.8235 11 6 5.9978 -2.6453 3.5251 12 6 6.2475 -3.7455 2.4915 13 6 4.9808 -3.1357 4.5593 14 6 5.5589 -4.3459 5.2981 15 6 6.8847 -3.9518 5.9533 16 7 7.8234 -3.4906 4.9226 17 6 9.1514 -3.2350 5.4964 18 6 9.7484 -4.5320 5.9785 19 8 9.1289 -5.5676 5.8557 20 7 10.9708 -4.5414 6.5461 21 6 11.5141 -5.7214 6.9841 22 1 10.9629 -6.6436 6.8740 23 6 12.7742 -5.7309 7.5698 24 7 13.4448 -4.6088 7.7042 25 14 13.5149 -7.3389 8.1660 26 1 12.5653 -8.4495 7.9011 27 1 14.7888 -7.5938 7.4468 28 1 13.7790 -7.2514 9.6247 29 6 7.3108 -2.3006 4.2317 30 1 -0.3634 -0.9258 -0.4461 31 1 -0.3633 0.0767 1.0249 32 1 -0.3633 0.8493 -0.5788 33 1 1.6112 -1.8583 -1.2686 34 1 3.1711 -0.8745 -1.2692 35 1 3.8427 -2.6326 2.1947 36 1 6.1786 -1.0486 2.0899 37 1 5.2738 -0.6170 3.5608 38 1 6.9729 -3.3961 1.7568 39 1 6.6353 -4.6329 2.9919 40 1 5.3118 -3.9916 1.9896 41 1 4.7735 -2.3382 5.2728 42 1 4.0582 -3.4234 4.0550 43 1 5.7298 -5.1568 4.5902 44 1 4.8574 -4.6739 6.0650 45 1 7.3060 -4.8151 6.4682 46 1 6.7109 -3.1502 6.6711 47 1 9.7980 -2.7980 4.7355 48 1 9.0582 -2.5443 6.3345 49 1 11.4661 -3.7132 6.6446 50 1 14.3246 -4.6156 8.1127 51 1 8.0418 -1.9647 3.4961 52 1 7.1350 -1.5068 4.9576 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569719079.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:14 Heat of formation + Delta-G solvation = -78.525324 kcal Electronic energy + Delta-G solvation = -29492.556386 eV Core-core repulsion = 25491.219154 eV Total energy + Delta-G solvation = -4001.337232 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.42523 -40.69306 -39.67355 -37.81990 -36.62192 -35.81706 -34.21192 -33.25561 -32.71539 -29.72903 -29.09151 -28.02240 -27.32423 -26.51653 -24.64362 -23.96445 -22.50989 -21.75173 -21.03572 -20.88840 -19.85394 -19.41937 -18.47936 -17.73491 -17.04111 -16.70617 -16.51567 -16.41458 -16.27389 -15.74648 -15.60659 -15.45933 -15.15876 -15.06691 -14.76189 -14.58776 -14.12292 -14.07253 -13.88216 -13.75772 -13.65496 -13.47013 -13.15893 -13.00333 -12.89743 -12.69410 -12.56500 -12.39574 -12.31682 -12.28991 -12.10731 -11.99441 -11.56099 -11.48269 -11.33220 -11.26485 -11.17234 -11.05311 -10.79935 -10.21323 -10.08271 -9.98042 -9.14236 -8.45648 -5.94007 1.36663 1.41693 1.49240 1.55803 2.07224 2.10554 2.29498 2.78879 2.88193 3.21346 3.40104 3.63304 3.69829 3.77097 3.80715 3.84256 3.90254 4.19826 4.22304 4.27816 4.28775 4.38850 4.43287 4.43924 4.49430 4.54396 4.63163 4.69246 4.75876 4.78185 4.82128 4.88984 4.90284 4.96147 5.00383 5.07246 5.09148 5.11760 5.22231 5.23156 5.27751 5.41049 5.41944 5.42639 5.46564 5.64837 5.92142 6.12272 6.27083 6.55119 6.62140 7.14512 7.24469 7.58364 8.14116 8.72057 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.036604 B = 0.001804 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.757856 B =15518.873641 C =15742.054316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.132 4.132 3 H 0.091 0.909 4 C -0.138 4.138 5 C -0.194 4.194 6 H 0.150 0.850 7 C 0.536 3.464 8 O -0.590 6.590 9 N -0.708 5.708 10 C 0.139 3.861 11 C -0.055 4.055 12 C -0.130 4.130 13 C -0.102 4.102 14 C -0.107 4.107 15 C 0.051 3.949 16 N -0.522 5.522 17 C 0.057 3.943 18 C 0.444 3.556 19 O -0.610 6.610 20 N -0.576 5.576 21 C -0.330 4.330 22 H 0.080 0.920 23 C -0.014 4.014 24 N -0.922 5.922 25 Si 0.993 3.007 26 H -0.273 1.273 27 H -0.272 1.272 28 H -0.272 1.272 29 C 0.066 3.934 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.130 0.870 34 H 0.086 0.914 35 H 0.414 0.586 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.048 0.952 39 H 0.055 0.945 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.085 0.915 43 H 0.064 0.936 44 H 0.075 0.925 45 H 0.059 0.941 46 H 0.026 0.974 47 H 0.107 0.893 48 H 0.062 0.938 49 H 0.395 0.605 50 H 0.277 0.723 51 H 0.081 0.919 52 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.173 7.920 -13.269 28.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.150 4.150 3 H 0.109 0.891 4 C -0.176 4.176 5 C -0.215 4.215 6 H 0.168 0.832 7 C 0.324 3.676 8 O -0.471 6.471 9 N -0.360 5.360 10 C 0.015 3.985 11 C -0.056 4.056 12 C -0.187 4.187 13 C -0.140 4.140 14 C -0.145 4.145 15 C -0.076 4.076 16 N -0.246 5.246 17 C -0.075 4.075 18 C 0.231 3.769 19 O -0.496 6.496 20 N -0.214 5.214 21 C -0.460 4.460 22 H 0.098 0.902 23 C -0.214 4.214 24 N -0.563 5.563 25 Si 0.816 3.184 26 H -0.197 1.197 27 H -0.197 1.197 28 H -0.197 1.197 29 C -0.063 4.063 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.148 0.852 34 H 0.105 0.895 35 H 0.252 0.748 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.104 0.896 43 H 0.083 0.917 44 H 0.094 0.906 45 H 0.078 0.922 46 H 0.044 0.956 47 H 0.125 0.875 48 H 0.080 0.920 49 H 0.228 0.772 50 H 0.086 0.914 51 H 0.099 0.901 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -24.022 7.674 -13.636 28.668 hybrid contribution 1.223 0.048 1.349 1.821 sum -22.799 7.722 -12.286 27.026 Atomic orbital electron populations 1.21397 0.90404 1.03272 1.02545 1.22404 0.96538 0.94102 1.02005 0.89098 1.23190 1.02873 1.01481 0.90020 1.22394 0.96534 1.06133 0.96428 0.83231 1.20223 0.85409 0.84078 0.77893 1.90681 1.70081 1.23110 1.63234 1.45848 1.23972 1.13876 1.52286 1.21192 0.85377 0.96223 0.95757 1.20663 0.94453 0.94776 0.95720 1.21745 1.01401 0.98221 0.97343 1.21632 0.97752 0.97378 0.97202 1.21526 0.94488 0.98571 0.99919 1.22184 0.93459 0.99289 0.92707 1.61415 1.00851 1.32947 1.29410 1.21712 0.92180 0.93648 0.99916 1.20720 0.82370 0.91581 0.82211 1.90459 1.62162 1.35783 1.61201 1.41950 1.15830 1.09988 1.53637 1.19693 1.00783 0.88165 1.37316 0.90246 1.26027 0.96303 1.01894 0.97133 1.69681 1.14215 1.27613 1.44820 0.84875 0.77966 0.77448 0.78069 1.19736 1.19708 1.19712 1.22115 0.96437 0.90176 0.97526 0.90735 0.91850 0.91335 0.85151 0.89509 0.74784 0.92117 0.92081 0.93270 0.92548 0.91444 0.91806 0.89648 0.91683 0.90633 0.92210 0.95561 0.87481 0.91987 0.77167 0.91405 0.90072 0.94183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.96 10.19 71.98 0.73 -0.23 16 2 C -0.13 -1.73 5.92 -10.77 -0.06 -1.79 16 3 H 0.09 1.67 7.67 -2.38 -0.02 1.66 16 4 C -0.14 -1.48 9.88 30.60 0.30 -1.18 16 5 C -0.19 -2.43 5.91 -11.51 -0.07 -2.50 16 6 H 0.15 1.05 8.14 -2.39 -0.02 1.03 16 7 C 0.54 10.47 7.61 87.66 0.67 11.14 16 8 O -0.59 -17.00 16.26 -3.02 -0.05 -17.05 16 9 N -0.71 -10.92 4.98 -463.06 -2.31 -13.22 16 10 C 0.14 2.56 4.57 86.38 0.39 2.95 16 11 C -0.06 -1.04 0.53 -52.13 -0.03 -1.07 16 12 C -0.13 -2.57 7.86 71.98 0.57 -2.01 16 13 C -0.10 -1.79 4.58 30.67 0.14 -1.65 16 14 C -0.11 -2.53 5.74 30.65 0.18 -2.35 16 15 C 0.05 1.61 5.11 86.33 0.44 2.05 16 16 N -0.52 -16.31 3.68 -900.92 -3.32 -19.63 16 17 C 0.06 1.98 5.45 85.56 0.47 2.44 16 18 C 0.44 21.07 7.46 87.66 0.65 21.73 16 19 O -0.61 -33.17 13.90 -3.08 -0.04 -33.22 16 20 N -0.58 -29.73 5.29 -306.97 -1.62 -31.35 16 21 C -0.33 -18.78 9.68 84.04 0.81 -17.97 16 22 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 23 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 24 N -0.92 -50.11 13.05 21.66 0.28 -49.83 16 25 Si 0.99 43.14 29.55 68.60 2.03 45.16 16 26 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 27 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 28 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 29 C 0.07 1.54 4.18 86.33 0.36 1.90 16 30 H 0.07 0.38 7.90 -2.39 -0.02 0.36 16 31 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 32 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 33 H 0.13 0.73 8.05 -2.39 -0.02 0.71 16 34 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.41 4.28 6.19 -92.71 -0.57 3.71 16 36 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 37 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.06 1.46 6.01 -2.39 -0.01 1.44 16 40 H 0.07 0.99 6.86 -2.39 -0.02 0.97 16 41 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.09 1.08 6.96 -2.38 -0.02 1.06 16 43 H 0.06 1.69 6.58 -2.39 -0.02 1.68 16 44 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.06 2.41 5.78 -2.39 -0.01 2.40 16 46 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.11 3.33 7.99 -2.39 -0.02 3.31 16 48 H 0.06 1.98 8.12 -2.39 -0.02 1.96 16 49 H 0.39 19.47 7.90 -92.71 -0.73 18.73 16 50 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 51 H 0.08 1.83 8.02 -2.39 -0.02 1.81 16 52 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -72.31 407.25 0.61 -71.70 By element: Atomic # 1 Polarization: 36.65 SS G_CDS: -0.38 Total: 36.27 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: 6.02 Total: 11.17 kcal Atomic # 7 Polarization: -107.07 SS G_CDS: -6.96 Total: -114.03 kcal Atomic # 8 Polarization: -50.18 SS G_CDS: -0.09 Total: -50.27 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.16 kcal Total: -72.31 0.61 -71.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569719079.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.826 kcal (2) G-P(sol) polarization free energy of solvation -72.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds