Wall clock time and date at job start Tue Mar 31 2020 22:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 115.56541 * 2 1 4 4 C 1.53075 * 117.49316 * 214.29572 * 2 1 3 5 5 C 1.52999 * 59.98646 * 252.51253 * 4 2 1 6 6 H 1.08997 * 117.49962 * 107.49057 * 5 4 2 7 7 C 1.50696 * 117.50232 * 252.49922 * 5 4 2 8 8 O 1.21285 * 120.00131 * 68.74014 * 7 5 4 9 9 N 1.34767 * 120.00183 * 248.74550 * 7 5 4 10 10 C 1.46501 * 120.00236 * 179.97438 * 9 7 5 11 11 C 1.53003 * 109.47182 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.50183 * 299.91733 * 11 10 9 13 13 C 1.53113 * 109.50784 * 59.99655 * 11 10 9 14 14 C 1.53112 * 109.16451 * 177.59518 * 13 11 10 15 15 C 1.53043 * 109.31106 * 302.32750 * 14 13 11 16 16 N 1.46923 * 109.47766 * 59.16175 * 15 14 13 17 17 C 1.46895 * 110.98674 * 174.18322 * 16 15 14 18 18 C 1.50706 * 109.47190 * 190.61731 * 17 16 15 19 19 O 1.21284 * 119.99964 * 6.26249 * 18 17 16 20 20 N 1.34776 * 120.00031 * 186.26543 * 18 17 16 21 21 C 1.37096 * 120.00038 * 179.97438 * 20 18 17 22 22 H 1.08001 * 119.99870 * 0.02562 * 21 20 18 23 23 C 1.38944 * 119.99947 * 179.97438 * 21 20 18 24 24 N 1.31416 * 120.00548 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00098 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46949 * 90.00309 * 25 23 21 27 27 H 1.48500 * 109.47463 * 210.00353 * 25 23 21 28 28 H 1.48504 * 109.47172 * 330.00268 * 25 23 21 29 29 C 1.46857 * 111.21639 * 298.28195 * 16 15 14 30 30 H 1.08996 * 109.46892 * 274.31125 * 1 2 3 31 31 H 1.09007 * 109.46922 * 34.30464 * 1 2 3 32 32 H 1.08992 * 109.47325 * 154.30982 * 1 2 3 33 33 H 1.09002 * 117.51704 * 145.03604 * 4 2 1 34 34 H 1.09001 * 117.51215 * 359.97438 * 4 2 1 35 35 H 0.96998 * 119.99927 * 359.97438 * 9 7 5 36 36 H 1.08993 * 109.47449 * 59.99767 * 10 9 7 37 37 H 1.09002 * 109.47268 * 299.99421 * 10 9 7 38 38 H 1.08998 * 109.47223 * 180.02562 * 12 11 10 39 39 H 1.09001 * 109.47533 * 300.08313 * 12 11 10 40 40 H 1.09007 * 109.47155 * 60.08042 * 12 11 10 41 41 H 1.09008 * 109.52363 * 57.68687 * 13 11 10 42 42 H 1.09004 * 109.57406 * 297.53582 * 13 11 10 43 43 H 1.09003 * 109.50213 * 62.28920 * 14 13 11 44 44 H 1.08999 * 109.50683 * 182.36828 * 14 13 11 45 45 H 1.08998 * 109.45857 * 179.21313 * 15 14 13 46 46 H 1.09000 * 109.46084 * 299.17999 * 15 14 13 47 47 H 1.09002 * 109.46704 * 310.61141 * 17 16 15 48 48 H 1.09002 * 109.47368 * 70.61307 * 17 16 15 49 49 H 0.97004 * 120.00043 * 359.97438 * 20 18 17 50 50 H 0.96994 * 120.00363 * 179.97438 * 24 23 21 51 51 H 1.08999 * 109.46067 * 301.72792 * 29 16 15 52 52 H 1.08999 * 109.45222 * 181.75976 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2367 -1.1218 -0.7651 5 6 2.2365 -1.1211 0.7649 6 1 1.6112 -1.8583 1.2684 7 6 3.5293 -0.7813 1.4607 8 8 3.9711 0.3467 1.4025 9 7 4.1946 -1.7309 2.1477 10 6 5.4517 -1.4007 2.8237 11 6 5.9973 -2.6473 3.5233 12 6 4.9804 -3.1406 4.5545 13 6 6.2488 -3.7462 2.4872 14 6 6.8505 -4.9681 3.1865 15 6 8.1420 -4.5589 3.8984 16 7 7.8478 -3.5056 4.8796 17 6 9.0375 -3.1841 5.6791 18 6 8.6426 -2.3013 6.8349 19 8 7.4717 -2.0650 7.0450 20 7 9.5906 -1.7744 7.6350 21 6 9.2313 -0.9709 8.6861 22 1 8.1887 -0.7605 8.8733 23 6 10.2086 -0.4281 9.5113 24 7 11.4773 -0.6845 9.2840 25 14 9.7192 0.6661 10.9439 26 1 9.5115 -0.1676 12.1551 27 1 10.7966 1.6548 11.2024 28 1 8.4602 1.3810 10.6133 29 6 7.3130 -2.3044 4.2256 30 1 -0.3633 0.0773 1.0247 31 1 -0.3633 0.8490 -0.5792 32 1 -0.3633 -0.9260 -0.4455 33 1 3.1719 -0.8766 -1.2684 34 1 1.6115 -1.8597 -1.2679 35 1 3.8412 -2.6330 2.1945 36 1 5.2730 -0.6185 3.5615 37 1 6.1773 -1.0493 2.0902 38 1 5.3697 -4.0283 5.0528 39 1 4.8017 -2.3580 5.2918 40 1 4.0447 -3.3875 4.0527 41 1 6.9429 -3.3811 1.7301 42 1 5.3071 -4.0243 2.0139 43 1 6.1400 -5.3564 3.9162 44 1 7.0709 -5.7385 2.4476 45 1 8.5651 -5.4240 4.4088 46 1 8.8570 -4.1836 3.1663 47 1 9.4791 -4.1051 6.0597 48 1 9.7643 -2.6632 5.0557 49 1 10.5270 -1.9637 7.4671 50 1 12.1595 -0.3053 9.8598 51 1 8.0320 -1.9397 3.4920 52 1 7.1347 -1.5324 4.9742 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569719082.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:35 Heat of formation + Delta-G solvation = -56.871826 kcal Electronic energy + Delta-G solvation = -29879.569414 eV Core-core repulsion = 25879.171149 eV Total energy + Delta-G solvation = -4000.398265 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.42946 -39.55528 -37.96594 -37.03667 -35.45182 -33.92400 -33.06673 -31.69323 -31.18285 -29.16510 -27.52494 -27.00758 -26.41376 -24.71755 -23.73824 -22.94086 -21.39078 -20.98429 -20.17013 -19.13958 -18.43374 -17.84811 -17.63345 -16.13620 -15.99164 -15.63202 -15.35213 -14.87855 -14.73987 -14.65696 -14.54860 -14.18911 -13.99731 -13.66980 -13.56328 -13.54193 -13.30832 -13.06791 -12.88185 -12.68981 -12.37961 -12.17694 -11.91787 -11.84395 -11.74675 -11.49107 -11.27930 -11.24273 -11.01336 -10.92587 -10.69057 -10.52452 -10.42533 -10.37908 -10.30073 -10.20377 -10.16324 -9.89083 -9.44320 -9.11733 -8.39897 -7.94551 -7.82529 -6.39484 -3.80046 2.36586 2.99011 3.19417 3.27980 3.33850 3.52068 3.93739 3.98600 4.24849 4.37614 4.43424 4.48823 4.65613 4.69616 4.83042 4.87719 4.98025 5.09956 5.18408 5.24062 5.27761 5.30856 5.35424 5.36377 5.41258 5.51329 5.57530 5.60605 5.68518 5.69882 5.70957 5.78849 5.84093 5.91169 5.95157 5.98394 5.99809 6.06340 6.13111 6.23363 6.28508 6.32771 6.36382 6.51177 6.73998 7.30157 7.38209 7.43928 7.57347 8.08924 8.13368 8.64473 9.20745 9.57409 10.09235 10.78312 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013668 B = 0.002370 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.026457 B =11812.931329 C =13329.995267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.122 4.122 3 H 0.117 0.883 4 C -0.150 4.150 5 C -0.191 4.191 6 H 0.122 0.878 7 C 0.539 3.461 8 O -0.542 6.542 9 N -0.719 5.719 10 C 0.129 3.871 11 C -0.064 4.064 12 C -0.127 4.127 13 C -0.110 4.110 14 C -0.115 4.115 15 C 0.053 3.947 16 N -0.510 5.510 17 C 0.046 3.954 18 C 0.443 3.557 19 O -0.574 6.574 20 N -0.566 5.566 21 C -0.296 4.296 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.929 3.071 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 C 0.069 3.931 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.400 0.600 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.036 0.964 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.075 0.925 44 H 0.063 0.937 45 H 0.073 0.927 46 H 0.028 0.972 47 H 0.089 0.911 48 H 0.045 0.955 49 H 0.391 0.609 50 H 0.271 0.729 51 H 0.024 0.976 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.051 -7.717 -19.550 25.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.141 4.141 3 H 0.135 0.865 4 C -0.187 4.187 5 C -0.213 4.213 6 H 0.140 0.860 7 C 0.325 3.675 8 O -0.419 6.419 9 N -0.371 5.371 10 C 0.005 3.995 11 C -0.065 4.065 12 C -0.184 4.184 13 C -0.147 4.147 14 C -0.153 4.153 15 C -0.075 4.075 16 N -0.234 5.234 17 C -0.085 4.085 18 C 0.229 3.771 19 O -0.458 6.458 20 N -0.203 5.203 21 C -0.426 4.426 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.194 1.194 29 C -0.059 4.059 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.117 0.883 34 H 0.122 0.878 35 H 0.235 0.765 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.055 0.945 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.094 0.906 44 H 0.081 0.919 45 H 0.091 0.909 46 H 0.046 0.954 47 H 0.107 0.893 48 H 0.063 0.937 49 H 0.224 0.776 50 H 0.081 0.919 51 H 0.042 0.958 52 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -14.688 -6.853 -19.004 24.977 hybrid contribution 1.121 0.183 0.236 1.160 sum -13.567 -6.671 -18.768 24.100 Atomic orbital electron populations 1.21403 0.92216 1.02174 1.02293 1.22391 0.95220 0.95144 1.01351 0.86466 1.23108 1.03143 1.01610 0.90857 1.22315 0.97884 1.05359 0.95703 0.85968 1.19649 0.84634 0.84753 0.78430 1.90710 1.68638 1.21063 1.61519 1.45948 1.24762 1.13315 1.53047 1.21399 0.84657 0.97289 0.96108 1.20762 0.96625 0.93747 0.95337 1.21727 0.95736 1.03126 0.97855 1.21657 1.00401 0.95526 0.97142 1.21598 0.97503 0.97044 0.99154 1.22135 0.96391 0.95294 0.93667 1.61448 1.29779 1.09020 1.23120 1.21854 0.91289 1.00124 0.95238 1.19749 0.86697 0.85097 0.85597 1.90501 1.17966 1.63643 1.73660 1.41886 1.08245 1.43688 1.26475 1.19678 0.94918 1.23581 1.04434 0.87946 1.25252 0.94807 0.98599 0.99370 1.69611 0.99572 1.45468 1.39766 0.85873 0.78212 0.79458 0.80843 1.20443 1.20980 1.19436 1.22093 0.93323 0.93307 0.97213 0.91865 0.91662 0.92378 0.88319 0.87830 0.76452 0.90888 0.91701 0.90603 0.92018 0.94455 0.92277 0.92248 0.90622 0.91868 0.90852 0.95367 0.89297 0.93684 0.77564 0.91934 0.95769 0.88133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.76 10.19 37.16 0.38 -0.38 16 2 C -0.12 -1.02 5.92 -90.58 -0.54 -1.56 16 3 H 0.12 1.20 7.67 -51.93 -0.40 0.81 16 4 C -0.15 -1.08 9.88 -26.69 -0.26 -1.34 16 5 C -0.19 -1.65 5.91 -91.77 -0.54 -2.19 16 6 H 0.12 0.81 8.14 -51.93 -0.42 0.38 16 7 C 0.54 6.56 7.61 -10.99 -0.08 6.48 16 8 O -0.54 -8.91 16.26 5.55 0.09 -8.82 16 9 N -0.72 -7.66 4.98 -60.30 -0.30 -7.96 16 10 C 0.13 1.65 4.57 -4.04 -0.02 1.63 16 11 C -0.06 -0.79 0.53 -154.43 -0.08 -0.87 16 12 C -0.13 -1.66 7.86 37.16 0.29 -1.37 16 13 C -0.11 -1.10 4.58 -26.62 -0.12 -1.22 16 14 C -0.12 -1.17 5.74 -26.65 -0.15 -1.32 16 15 C 0.05 0.65 5.47 -3.79 -0.02 0.63 16 16 N -0.51 -8.03 3.63 -236.04 -0.86 -8.88 16 17 C 0.05 0.81 5.45 -4.98 -0.03 0.78 16 18 C 0.44 10.25 7.31 -10.98 -0.08 10.17 16 19 O -0.57 -14.99 14.29 5.55 0.08 -14.91 16 20 N -0.57 -14.24 5.29 -10.96 -0.06 -14.30 16 21 C -0.30 -8.24 9.68 -14.94 -0.14 -8.38 16 22 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 24 N -0.90 -24.65 13.05 55.50 0.72 -23.93 16 25 Si 0.93 21.22 29.55 -169.99 -5.02 16.20 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 29 C 0.07 1.08 3.84 -3.83 -0.01 1.06 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.29 7.90 -51.93 -0.41 -0.12 16 33 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.10 0.53 8.05 -51.93 -0.42 0.11 16 35 H 0.40 3.29 6.19 -40.82 -0.25 3.03 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.08 1.09 6.01 -51.93 -0.31 0.78 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.04 0.38 6.87 -51.93 -0.36 0.03 16 41 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 42 H 0.06 0.49 6.95 -51.93 -0.36 0.13 16 43 H 0.08 0.81 6.58 -51.93 -0.34 0.47 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.07 0.84 8.01 -51.93 -0.42 0.42 16 46 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.09 1.41 7.98 -51.93 -0.41 1.00 16 48 H 0.05 0.74 8.12 -51.93 -0.42 0.31 16 49 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 50 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 51 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 52 H 0.10 1.96 6.06 -51.93 -0.31 1.64 16 LS Contribution 407.71 15.07 6.14 6.14 Total: -1.00 -32.38 407.71 -9.61 -42.00 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: -8.90 Total: 11.87 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: -1.51 Total: 2.58 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: -0.49 Total: -55.07 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: 0.17 Total: -23.73 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.38 -9.61 -42.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569719082.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.872 kcal (2) G-P(sol) polarization free energy of solvation -32.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds