Wall clock time and date at job start Tue Mar 31 2020 22:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 115.56541 * 2 1 4 4 C 1.53075 * 117.49316 * 214.29572 * 2 1 3 5 5 C 1.52999 * 59.98646 * 252.51253 * 4 2 1 6 6 H 1.08997 * 117.49962 * 107.49057 * 5 4 2 7 7 C 1.50696 * 117.50232 * 252.49922 * 5 4 2 8 8 O 1.21285 * 120.00131 * 68.74014 * 7 5 4 9 9 N 1.34767 * 120.00183 * 248.74550 * 7 5 4 10 10 C 1.46501 * 120.00236 * 179.97438 * 9 7 5 11 11 C 1.53003 * 109.47182 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.50183 * 299.91733 * 11 10 9 13 13 C 1.53113 * 109.50784 * 59.99655 * 11 10 9 14 14 C 1.53112 * 109.16451 * 177.59518 * 13 11 10 15 15 C 1.53043 * 109.31106 * 302.32750 * 14 13 11 16 16 N 1.46923 * 109.47766 * 59.16175 * 15 14 13 17 17 C 1.46895 * 110.98674 * 174.18322 * 16 15 14 18 18 C 1.50706 * 109.47190 * 190.61731 * 17 16 15 19 19 O 1.21284 * 119.99964 * 6.26249 * 18 17 16 20 20 N 1.34776 * 120.00031 * 186.26543 * 18 17 16 21 21 C 1.37096 * 120.00038 * 179.97438 * 20 18 17 22 22 H 1.08001 * 119.99870 * 0.02562 * 21 20 18 23 23 C 1.38944 * 119.99947 * 179.97438 * 21 20 18 24 24 N 1.31416 * 120.00548 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00098 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46949 * 90.00309 * 25 23 21 27 27 H 1.48500 * 109.47463 * 210.00353 * 25 23 21 28 28 H 1.48504 * 109.47172 * 330.00268 * 25 23 21 29 29 C 1.46857 * 111.21639 * 298.28195 * 16 15 14 30 30 H 1.08996 * 109.46892 * 274.31125 * 1 2 3 31 31 H 1.09007 * 109.46922 * 34.30464 * 1 2 3 32 32 H 1.08992 * 109.47325 * 154.30982 * 1 2 3 33 33 H 1.09002 * 117.51704 * 145.03604 * 4 2 1 34 34 H 1.09001 * 117.51215 * 359.97438 * 4 2 1 35 35 H 0.96998 * 119.99927 * 359.97438 * 9 7 5 36 36 H 1.08993 * 109.47449 * 59.99767 * 10 9 7 37 37 H 1.09002 * 109.47268 * 299.99421 * 10 9 7 38 38 H 1.08998 * 109.47223 * 180.02562 * 12 11 10 39 39 H 1.09001 * 109.47533 * 300.08313 * 12 11 10 40 40 H 1.09007 * 109.47155 * 60.08042 * 12 11 10 41 41 H 1.09008 * 109.52363 * 57.68687 * 13 11 10 42 42 H 1.09004 * 109.57406 * 297.53582 * 13 11 10 43 43 H 1.09003 * 109.50213 * 62.28920 * 14 13 11 44 44 H 1.08999 * 109.50683 * 182.36828 * 14 13 11 45 45 H 1.08998 * 109.45857 * 179.21313 * 15 14 13 46 46 H 1.09000 * 109.46084 * 299.17999 * 15 14 13 47 47 H 1.09002 * 109.46704 * 310.61141 * 17 16 15 48 48 H 1.09002 * 109.47368 * 70.61307 * 17 16 15 49 49 H 0.97004 * 120.00043 * 359.97438 * 20 18 17 50 50 H 0.96994 * 120.00363 * 179.97438 * 24 23 21 51 51 H 1.08999 * 109.46067 * 301.72792 * 29 16 15 52 52 H 1.08999 * 109.45222 * 181.75976 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2367 -1.1218 -0.7651 5 6 2.2365 -1.1211 0.7649 6 1 1.6112 -1.8583 1.2684 7 6 3.5293 -0.7813 1.4607 8 8 3.9711 0.3467 1.4025 9 7 4.1946 -1.7309 2.1477 10 6 5.4517 -1.4007 2.8237 11 6 5.9973 -2.6473 3.5233 12 6 4.9804 -3.1406 4.5545 13 6 6.2488 -3.7462 2.4872 14 6 6.8505 -4.9681 3.1865 15 6 8.1420 -4.5589 3.8984 16 7 7.8478 -3.5056 4.8796 17 6 9.0375 -3.1841 5.6791 18 6 8.6426 -2.3013 6.8349 19 8 7.4717 -2.0650 7.0450 20 7 9.5906 -1.7744 7.6350 21 6 9.2313 -0.9709 8.6861 22 1 8.1887 -0.7605 8.8733 23 6 10.2086 -0.4281 9.5113 24 7 11.4773 -0.6845 9.2840 25 14 9.7192 0.6661 10.9439 26 1 9.5115 -0.1676 12.1551 27 1 10.7966 1.6548 11.2024 28 1 8.4602 1.3810 10.6133 29 6 7.3130 -2.3044 4.2256 30 1 -0.3633 0.0773 1.0247 31 1 -0.3633 0.8490 -0.5792 32 1 -0.3633 -0.9260 -0.4455 33 1 3.1719 -0.8766 -1.2684 34 1 1.6115 -1.8597 -1.2679 35 1 3.8412 -2.6330 2.1945 36 1 5.2730 -0.6185 3.5615 37 1 6.1773 -1.0493 2.0902 38 1 5.3697 -4.0283 5.0528 39 1 4.8017 -2.3580 5.2918 40 1 4.0447 -3.3875 4.0527 41 1 6.9429 -3.3811 1.7301 42 1 5.3071 -4.0243 2.0139 43 1 6.1400 -5.3564 3.9162 44 1 7.0709 -5.7385 2.4476 45 1 8.5651 -5.4240 4.4088 46 1 8.8570 -4.1836 3.1663 47 1 9.4791 -4.1051 6.0597 48 1 9.7643 -2.6632 5.0557 49 1 10.5270 -1.9637 7.4671 50 1 12.1595 -0.3053 9.8598 51 1 8.0320 -1.9397 3.4920 52 1 7.1347 -1.5324 4.9742 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569719082.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:32 Heat of formation + Delta-G solvation = -79.164597 kcal Electronic energy + Delta-G solvation = -29880.536101 eV Core-core repulsion = 25879.171149 eV Total energy + Delta-G solvation = -4001.364953 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.45792 -40.70633 -39.62663 -37.84986 -36.64858 -35.87490 -34.23518 -33.22252 -32.68802 -29.74380 -29.04330 -28.06740 -27.40142 -26.52086 -24.62970 -24.11378 -22.31570 -21.79238 -21.01639 -20.96653 -19.86428 -19.43500 -18.52342 -17.72016 -17.18428 -16.74793 -16.54941 -16.38360 -16.16819 -15.71501 -15.64834 -15.55485 -15.21578 -15.03010 -14.67434 -14.62657 -14.20638 -14.09560 -13.85178 -13.70094 -13.57141 -13.39631 -13.23495 -13.11466 -12.90247 -12.85149 -12.45116 -12.41974 -12.34856 -12.28091 -12.14321 -11.98487 -11.50068 -11.46990 -11.36568 -11.28121 -11.19326 -11.07623 -10.81607 -10.23156 -10.14890 -9.98374 -9.14403 -8.46383 -5.94383 1.36345 1.39534 1.45387 1.52149 2.07119 2.07929 2.27914 2.79548 2.85264 3.20572 3.36799 3.61525 3.70417 3.76517 3.78210 3.86211 3.89201 4.19089 4.22037 4.25099 4.26830 4.33983 4.42233 4.45250 4.47803 4.56163 4.62929 4.70314 4.76764 4.79089 4.84718 4.87523 4.88730 4.94636 5.00295 5.06549 5.07045 5.13154 5.18939 5.21644 5.30733 5.38976 5.39597 5.40909 5.43593 5.66866 5.91368 6.10123 6.28464 6.52117 6.62008 7.14219 7.21457 7.58538 8.14819 8.71141 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013668 B = 0.002370 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.026457 B =11812.931329 C =13329.995267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.136 4.136 3 H 0.087 0.913 4 C -0.131 4.131 5 C -0.194 4.194 6 H 0.152 0.848 7 C 0.532 3.468 8 O -0.594 6.594 9 N -0.704 5.704 10 C 0.137 3.863 11 C -0.053 4.053 12 C -0.119 4.119 13 C -0.103 4.103 14 C -0.110 4.110 15 C 0.049 3.951 16 N -0.523 5.523 17 C 0.057 3.943 18 C 0.441 3.559 19 O -0.608 6.608 20 N -0.578 5.578 21 C -0.328 4.328 22 H 0.077 0.923 23 C -0.015 4.015 24 N -0.922 5.922 25 Si 0.991 3.009 26 H -0.270 1.270 27 H -0.271 1.271 28 H -0.275 1.275 29 C 0.071 3.929 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.136 0.864 35 H 0.416 0.584 36 H 0.038 0.962 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.022 0.978 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.087 0.913 43 H 0.071 0.929 44 H 0.094 0.906 45 H 0.085 0.915 46 H 0.037 0.963 47 H 0.112 0.888 48 H 0.060 0.940 49 H 0.395 0.605 50 H 0.277 0.723 51 H 0.027 0.973 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.087 -10.257 -21.502 28.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.155 4.155 3 H 0.106 0.894 4 C -0.168 4.168 5 C -0.215 4.215 6 H 0.169 0.831 7 C 0.321 3.679 8 O -0.475 6.475 9 N -0.356 5.356 10 C 0.013 3.987 11 C -0.054 4.054 12 C -0.177 4.177 13 C -0.141 4.141 14 C -0.148 4.148 15 C -0.078 4.078 16 N -0.247 5.247 17 C -0.074 4.074 18 C 0.229 3.771 19 O -0.494 6.494 20 N -0.216 5.216 21 C -0.458 4.458 22 H 0.095 0.905 23 C -0.215 4.215 24 N -0.563 5.563 25 Si 0.815 3.185 26 H -0.195 1.195 27 H -0.196 1.196 28 H -0.200 1.200 29 C -0.057 4.057 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.154 0.846 35 H 0.254 0.746 36 H 0.057 0.943 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.041 0.959 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.105 0.895 43 H 0.090 0.910 44 H 0.113 0.887 45 H 0.103 0.897 46 H 0.056 0.944 47 H 0.130 0.870 48 H 0.078 0.922 49 H 0.228 0.772 50 H 0.086 0.914 51 H 0.045 0.955 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.722 -9.451 -20.972 27.863 hybrid contribution 1.437 0.984 0.815 1.923 sum -14.284 -8.467 -20.157 26.116 Atomic orbital electron populations 1.21391 0.90261 1.03437 1.02443 1.22425 0.96673 0.94111 1.02245 0.89431 1.23214 1.02823 1.01178 0.89568 1.22363 0.96152 1.06305 0.96666 0.83078 1.20383 0.85566 0.84019 0.77952 1.90690 1.70177 1.23271 1.63394 1.45791 1.23772 1.13965 1.52080 1.21143 0.85619 0.96743 0.95243 1.20638 0.94577 0.94464 0.95676 1.21637 0.97444 1.01204 0.97368 1.21645 1.02051 0.94251 0.96140 1.21611 0.96126 0.97516 0.99528 1.22317 0.98113 0.94156 0.93205 1.61439 1.29118 1.09602 1.24576 1.21736 0.92378 0.99797 0.93496 1.20813 0.85872 0.84393 0.86071 1.90482 1.19555 1.64634 1.74679 1.41959 1.08734 1.44214 1.26689 1.19608 0.94154 1.25628 1.06373 0.90488 1.26010 0.94709 0.99400 1.01351 1.69671 1.00117 1.45922 1.40575 0.84962 0.77842 0.77888 0.77856 1.19521 1.19596 1.20023 1.21959 0.95308 0.92482 0.95985 0.92139 0.91305 0.90356 0.89400 0.84624 0.74559 0.94318 0.92286 0.91546 0.95878 0.91175 0.91830 0.89455 0.90988 0.88750 0.89679 0.94441 0.86975 0.92229 0.77169 0.91407 0.95472 0.93113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.22 10.19 71.98 0.73 -0.48 16 2 C -0.14 -2.14 5.92 -10.77 -0.06 -2.20 16 3 H 0.09 1.90 7.67 -2.39 -0.02 1.89 16 4 C -0.13 -1.56 9.88 30.62 0.30 -1.26 16 5 C -0.19 -2.98 5.91 -11.54 -0.07 -3.04 16 6 H 0.15 1.44 8.14 -2.39 -0.02 1.42 16 7 C 0.53 12.86 7.61 87.66 0.67 13.53 16 8 O -0.59 -20.52 16.26 -3.05 -0.05 -20.57 16 9 N -0.70 -14.35 4.98 -463.07 -2.31 -16.65 16 10 C 0.14 3.61 4.57 86.38 0.39 4.01 16 11 C -0.05 -1.29 0.53 -52.13 -0.03 -1.32 16 12 C -0.12 -3.10 7.86 71.98 0.57 -2.54 16 13 C -0.10 -1.75 4.58 30.67 0.14 -1.61 16 14 C -0.11 -1.82 5.74 30.65 0.18 -1.64 16 15 C 0.05 1.06 5.47 86.31 0.47 1.53 16 16 N -0.52 -16.22 3.63 -900.69 -3.27 -19.49 16 17 C 0.06 1.99 5.45 85.56 0.47 2.46 16 18 C 0.44 21.21 7.31 87.66 0.64 21.86 16 19 O -0.61 -33.60 14.29 -3.04 -0.04 -33.64 16 20 N -0.58 -30.20 5.29 -306.99 -1.62 -31.82 16 21 C -0.33 -18.97 9.68 84.04 0.81 -18.16 16 22 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 23 C -0.02 -0.84 5.50 84.92 0.47 -0.37 16 24 N -0.92 -50.69 13.05 21.66 0.28 -50.41 16 25 Si 0.99 44.10 29.55 68.60 2.03 46.13 16 26 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 27 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 28 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 29 C 0.07 2.30 3.84 86.32 0.33 2.63 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.08 0.50 7.90 -2.39 -0.02 0.48 16 33 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.14 0.79 8.05 -2.39 -0.02 0.77 16 35 H 0.42 5.66 6.19 -92.71 -0.57 5.09 16 36 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.07 1.87 6.01 -2.39 -0.01 1.86 16 39 H 0.02 0.75 8.14 -2.39 -0.02 0.74 16 40 H 0.07 1.31 6.87 -2.38 -0.02 1.30 16 41 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 42 H 0.09 1.04 6.95 -2.39 -0.02 1.02 16 43 H 0.07 1.29 6.58 -2.39 -0.02 1.27 16 44 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.08 1.66 8.01 -2.39 -0.02 1.65 16 46 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.11 3.40 7.98 -2.39 -0.02 3.38 16 48 H 0.06 1.92 8.12 -2.39 -0.02 1.90 16 49 H 0.39 19.66 7.90 -92.71 -0.73 18.92 16 50 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 51 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 52 H 0.05 2.14 6.06 -2.39 -0.01 2.13 16 Total: -1.00 -75.95 407.71 0.65 -75.30 By element: Atomic # 1 Polarization: 38.15 SS G_CDS: -0.38 Total: 37.77 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: 6.01 Total: 13.39 kcal Atomic # 7 Polarization: -111.46 SS G_CDS: -6.92 Total: -118.37 kcal Atomic # 8 Polarization: -54.12 SS G_CDS: -0.09 Total: -54.21 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -75.95 0.65 -75.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569719082.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.863 kcal (2) G-P(sol) polarization free energy of solvation -75.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds