Wall clock time and date at job start Tue Mar 31 2020 22:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 115.56407 * 2 1 4 4 C 1.53076 * 117.49687 * 214.28745 * 2 1 3 5 5 C 1.52998 * 59.98437 * 252.51575 * 4 2 1 6 6 H 1.09000 * 117.49966 * 107.49945 * 5 4 2 7 7 C 1.50702 * 117.49806 * 252.49826 * 5 4 2 8 8 O 1.21281 * 119.99948 * 68.74648 * 7 5 4 9 9 N 1.34778 * 119.99833 * 248.74910 * 7 5 4 10 10 C 1.46923 * 120.63367 * 5.51328 * 9 7 5 11 11 C 1.53182 * 108.77657 * 126.37074 * 10 9 7 12 12 C 1.53039 * 109.31427 * 54.63445 * 11 10 9 13 13 C 1.53041 * 109.53988 * 298.63719 * 12 11 10 14 14 C 1.46931 * 120.62902 * 185.49267 * 9 7 5 15 15 H 1.09005 * 109.58424 * 113.69522 * 14 9 7 16 16 C 1.53002 * 109.58612 * 353.42149 * 14 9 7 17 17 N 1.46497 * 109.46883 * 179.97438 * 16 14 9 18 18 C 1.34776 * 119.99861 * 174.98574 * 17 16 14 19 19 O 1.21281 * 120.00358 * 359.97438 * 18 17 16 20 20 C 1.50707 * 119.99980 * 179.97438 * 18 17 16 21 21 C 1.53000 * 109.47086 * 179.97438 * 20 18 17 22 22 N 1.46497 * 109.47118 * 179.97438 * 21 20 18 23 23 C 1.36939 * 119.99875 * 179.97438 * 22 21 20 24 24 H 1.07995 * 120.00160 * 0.02562 * 23 22 21 25 25 C 1.38817 * 119.99483 * 179.97438 * 23 22 21 26 26 N 1.31621 * 119.99655 * 180.02562 * 25 23 22 27 27 Si 1.86799 * 120.00196 * 0.02562 * 25 23 22 28 28 H 1.48501 * 109.47000 * 90.00292 * 27 25 23 29 29 H 1.48499 * 109.46960 * 209.99539 * 27 25 23 30 30 H 1.48493 * 109.47207 * 329.99784 * 27 25 23 31 31 H 1.08992 * 109.47346 * 274.31172 * 1 2 3 32 32 H 1.09000 * 109.47106 * 34.31351 * 1 2 3 33 33 H 1.08997 * 109.47000 * 154.30680 * 1 2 3 34 34 H 1.09000 * 117.51521 * 145.03626 * 4 2 1 35 35 H 1.08999 * 117.51424 * 359.97438 * 4 2 1 36 36 H 1.08997 * 109.58664 * 246.16129 * 10 9 7 37 37 H 1.09008 * 109.58223 * 6.44268 * 10 9 7 38 38 H 1.09001 * 109.50289 * 174.59023 * 11 10 9 39 39 H 1.09004 * 109.50034 * 294.65626 * 11 10 9 40 40 H 1.09003 * 109.45520 * 58.65765 * 12 11 10 41 41 H 1.08998 * 109.46636 * 178.61265 * 12 11 10 42 42 H 1.08994 * 109.49323 * 301.41035 * 13 12 11 43 43 H 1.09003 * 109.49748 * 181.31386 * 13 12 11 44 44 H 1.08995 * 109.47713 * 59.95208 * 16 14 9 45 45 H 1.09004 * 109.46476 * 299.95460 * 16 14 9 46 46 H 0.96996 * 120.00362 * 354.97579 * 17 16 14 47 47 H 1.08996 * 109.46662 * 299.99564 * 20 18 17 48 48 H 1.08995 * 109.47221 * 59.99560 * 20 18 17 49 49 H 1.09000 * 109.47014 * 299.99954 * 21 20 18 50 50 H 1.08995 * 109.47206 * 59.99849 * 21 20 18 51 51 H 0.97004 * 119.99950 * 0.02562 * 22 21 20 52 52 H 0.96995 * 119.99999 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2367 -1.1219 -0.7649 5 6 2.2364 -1.1210 0.7651 6 1 1.6111 -1.8582 1.2687 7 6 3.5292 -0.7810 1.4609 8 8 3.9709 0.3470 1.4026 9 7 4.1945 -1.7306 2.1480 10 6 3.7381 -3.1270 2.1287 11 6 4.9067 -4.0219 1.7046 12 6 6.1017 -3.7640 2.6252 13 6 6.5406 -2.3035 2.4972 14 6 5.3905 -1.3891 2.9303 15 1 5.1863 -1.5326 3.9914 16 6 5.7713 0.0705 2.6743 17 7 6.9634 0.4084 3.4558 18 6 7.5434 1.6164 3.3118 19 8 7.0788 2.4236 2.5350 20 6 8.7695 1.9643 4.1162 21 6 9.2241 3.3825 3.7655 22 7 10.4155 3.7209 4.5479 23 6 11.0054 4.9479 4.4009 24 1 10.5921 5.6663 3.7086 25 6 12.1341 5.2687 5.1427 26 7 12.7008 6.4482 5.0018 27 14 12.8486 4.0262 6.3407 28 1 13.8521 3.1845 5.6410 29 1 13.5015 4.7425 7.4658 30 1 11.7603 3.1642 6.8677 31 1 -0.3633 0.0773 1.0247 32 1 -0.3633 0.8488 -0.5793 33 1 -0.3633 -0.9260 -0.4455 34 1 3.1719 -0.8766 -1.2682 35 1 1.6117 -1.8599 -1.2676 36 1 3.4000 -3.4147 3.1242 37 1 2.9174 -3.2333 1.4192 38 1 4.6095 -5.0680 1.7787 39 1 5.1842 -3.7947 0.6753 40 1 5.8159 -3.9682 3.6571 41 1 6.9267 -4.4173 2.3411 42 1 6.8030 -2.0921 1.4606 43 1 7.4063 -2.1265 3.1355 44 1 4.9465 0.7186 2.9705 45 1 5.9805 0.2106 1.6137 46 1 7.3352 -0.2371 4.0769 47 1 8.5340 1.9102 5.1791 48 1 9.5680 1.2595 3.8847 49 1 9.4596 3.4361 2.7026 50 1 8.4257 4.0875 3.9968 51 1 10.7870 3.0754 5.1695 52 1 13.4896 6.6723 5.5198 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571667660.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:35 Heat of formation + Delta-G solvation = -27.576999 kcal Electronic energy + Delta-G solvation = -29511.444191 eV Core-core repulsion = 25512.316244 eV Total energy + Delta-G solvation = -3999.127946 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.21103 -39.39196 -38.42086 -36.96240 -35.24437 -34.74138 -33.34907 -32.06776 -31.56531 -29.54412 -29.21333 -27.25421 -25.29363 -24.56293 -23.77573 -22.30295 -21.52310 -21.30476 -20.78140 -20.21522 -19.13143 -17.93290 -17.45794 -16.80867 -16.34320 -15.91611 -15.68368 -15.38998 -14.98880 -14.85078 -14.75419 -14.39810 -14.35162 -13.93354 -13.71230 -13.61755 -13.47401 -13.30841 -13.17277 -13.06314 -12.68930 -12.55282 -12.38986 -12.19345 -11.83796 -11.61649 -11.52039 -11.31471 -11.25723 -11.13184 -11.12703 -10.83117 -10.76231 -10.72520 -10.46131 -10.10401 -9.76916 -9.51594 -9.36627 -9.17351 -8.83068 -8.74990 -7.15287 -5.68712 -3.04272 2.10937 2.34588 2.96611 3.32891 3.40917 3.42799 3.44063 3.49171 3.93595 4.18436 4.26192 4.29298 4.33792 4.37311 4.47759 4.61712 4.65046 4.71735 4.75813 4.90169 4.92510 5.00065 5.07968 5.14987 5.19112 5.26066 5.32388 5.32886 5.37646 5.46520 5.50260 5.52843 5.53948 5.55034 5.65010 5.66741 5.76565 5.86077 5.91673 5.93286 5.96353 6.01889 6.28516 6.52259 6.86700 6.93637 6.95950 7.62637 7.83617 8.09166 8.48308 8.52030 9.29106 10.00756 10.20912 11.49923 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016784 B = 0.002111 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.898941 B =13258.862530 C =14648.500406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 H 0.120 0.880 4 C -0.149 4.149 5 C -0.193 4.193 6 H 0.122 0.878 7 C 0.539 3.461 8 O -0.517 6.517 9 N -0.606 5.606 10 C 0.110 3.890 11 C -0.136 4.136 12 C -0.120 4.120 13 C -0.134 4.134 14 C 0.136 3.864 15 H 0.078 0.922 16 C 0.130 3.870 17 N -0.745 5.745 18 C 0.518 3.482 19 O -0.527 6.527 20 C -0.150 4.150 21 C 0.172 3.828 22 N -0.759 5.759 23 C -0.240 4.240 24 H 0.091 0.909 25 C 0.000 4.000 26 N -0.935 5.935 27 Si 0.887 3.113 28 H -0.285 1.285 29 H -0.291 1.291 30 H -0.278 1.278 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.088 0.912 45 H 0.081 0.919 46 H 0.392 0.608 47 H 0.091 0.909 48 H 0.091 0.909 49 H 0.036 0.964 50 H 0.036 0.964 51 H 0.359 0.641 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.752 -30.262 -7.428 40.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.139 4.139 3 H 0.138 0.862 4 C -0.186 4.186 5 C -0.215 4.215 6 H 0.140 0.860 7 C 0.327 3.673 8 O -0.392 6.392 9 N -0.340 5.340 10 C -0.013 4.013 11 C -0.174 4.174 12 C -0.158 4.158 13 C -0.172 4.172 14 C 0.033 3.967 15 H 0.096 0.904 16 C 0.007 3.993 17 N -0.400 5.400 18 C 0.304 3.696 19 O -0.402 6.402 20 C -0.191 4.191 21 C 0.044 3.956 22 N -0.405 5.405 23 C -0.370 4.370 24 H 0.109 0.891 25 C -0.195 4.195 26 N -0.584 5.584 27 Si 0.717 3.283 28 H -0.211 1.211 29 H -0.218 1.218 30 H -0.204 1.204 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.118 0.882 35 H 0.122 0.878 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.096 0.904 44 H 0.106 0.894 45 H 0.099 0.901 46 H 0.226 0.774 47 H 0.109 0.891 48 H 0.109 0.891 49 H 0.054 0.946 50 H 0.054 0.946 51 H 0.191 0.809 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -25.846 -28.805 -8.134 39.546 hybrid contribution 0.851 -1.475 1.367 2.184 sum -24.996 -30.280 -6.767 39.843 Atomic orbital electron populations 1.21399 0.92141 1.02263 1.02259 1.22434 0.95286 0.95251 1.00961 0.86230 1.23121 1.03289 1.01697 0.90495 1.22341 0.97713 1.05547 0.95850 0.85968 1.19830 0.84653 0.84537 0.78238 1.90841 1.67221 1.21252 1.59864 1.47991 1.27921 1.08562 1.49568 1.21768 0.97237 0.80065 1.02230 1.21924 0.95547 0.99535 1.00407 1.21523 0.98029 0.96297 0.99943 1.22032 0.97545 0.94601 1.03009 1.21502 0.84808 0.95256 0.95146 0.90415 1.22042 0.87491 0.92603 0.97121 1.46335 1.31138 1.17114 1.45461 1.20695 0.85005 0.80999 0.82867 1.90733 1.64221 1.48355 1.36928 1.21878 0.95359 1.01287 1.00554 1.20351 0.89302 0.90458 0.95460 1.42713 1.31571 1.16666 1.49512 1.19100 1.06999 0.90780 1.20076 0.89073 1.24693 0.98174 0.96675 0.99954 1.69709 1.23372 1.20508 1.44799 0.86504 0.78986 0.81249 0.81532 1.21139 1.21772 1.20416 0.91921 0.91501 0.92422 0.88200 0.87798 0.91240 0.89272 0.90507 0.91276 0.91599 0.91300 0.91031 0.90364 0.89417 0.90055 0.77443 0.89076 0.89095 0.94587 0.94618 0.80870 0.93135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.65 10.19 37.15 0.38 -0.27 16 2 C -0.12 -0.89 5.92 -90.58 -0.54 -1.43 16 3 H 0.12 1.17 7.67 -51.93 -0.40 0.77 16 4 C -0.15 -0.90 9.88 -26.69 -0.26 -1.17 16 5 C -0.19 -1.33 4.53 -91.77 -0.42 -1.74 16 6 H 0.12 0.57 7.08 -51.93 -0.37 0.20 16 7 C 0.54 5.36 7.39 -10.98 -0.08 5.28 16 8 O -0.52 -7.39 11.66 5.56 0.06 -7.32 16 9 N -0.61 -4.65 2.97 -165.22 -0.49 -5.14 16 10 C 0.11 0.47 6.25 -3.72 -0.02 0.45 16 11 C -0.14 -0.54 6.08 -26.62 -0.16 -0.70 16 12 C -0.12 -0.56 5.88 -26.69 -0.16 -0.72 16 13 C -0.13 -0.90 5.12 -26.61 -0.14 -1.04 16 14 C 0.14 1.13 3.04 -67.60 -0.21 0.92 16 15 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 16 C 0.13 1.63 3.52 -4.04 -0.01 1.62 16 17 N -0.74 -9.02 5.24 -60.29 -0.32 -9.34 16 18 C 0.52 8.55 7.83 -10.98 -0.09 8.47 16 19 O -0.53 -11.23 15.98 5.56 0.09 -11.14 16 20 C -0.15 -2.43 5.81 -27.88 -0.16 -2.59 16 21 C 0.17 3.76 5.55 -4.04 -0.02 3.74 16 22 N -0.76 -19.18 5.41 -59.91 -0.32 -19.50 16 23 C -0.24 -7.20 10.47 -15.06 -0.16 -7.36 16 24 H 0.09 2.95 8.06 -52.49 -0.42 2.53 16 25 C 0.00 0.01 5.50 -17.43 -0.10 -0.09 16 26 N -0.94 -30.43 13.97 55.49 0.78 -29.65 16 27 Si 0.89 22.58 27.74 -169.99 -4.71 17.86 16 28 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 29 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 30 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.23 7.90 -51.93 -0.41 -0.18 16 34 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.10 0.41 8.05 -51.93 -0.42 -0.01 16 36 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.09 0.27 5.87 -51.92 -0.30 -0.03 16 38 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 39 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.08 0.48 7.19 -51.93 -0.37 0.10 16 44 H 0.09 1.35 6.45 -51.93 -0.33 1.02 16 45 H 0.08 1.26 7.03 -51.93 -0.37 0.90 16 46 H 0.39 3.38 7.59 -40.82 -0.31 3.07 16 47 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 48 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 49 H 0.04 0.84 8.10 -51.93 -0.42 0.42 16 50 H 0.04 0.84 8.10 -51.93 -0.42 0.42 16 51 H 0.36 8.52 5.53 -40.82 -0.23 8.30 16 52 H 0.26 7.96 8.31 -40.82 -0.34 7.62 16 LS Contribution 407.30 15.07 6.14 6.14 Total: -1.00 -38.29 407.30 -9.93 -48.23 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -9.01 Total: 6.50 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: -2.14 Total: 3.37 kcal Atomic # 7 Polarization: -63.28 SS G_CDS: -0.36 Total: -63.64 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: 0.15 Total: -18.47 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.71 Total: 17.86 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -38.29 -9.93 -48.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571667660.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.649 kcal (2) G-P(sol) polarization free energy of solvation -38.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds