Wall clock time and date at job start Tue Mar 31 2020 22:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 115.56407 * 2 1 4 4 C 1.53076 * 117.49687 * 214.28745 * 2 1 3 5 5 C 1.52998 * 59.98437 * 252.51575 * 4 2 1 6 6 H 1.09000 * 117.49966 * 107.49945 * 5 4 2 7 7 C 1.50702 * 117.49806 * 252.49826 * 5 4 2 8 8 O 1.21281 * 119.99948 * 68.74648 * 7 5 4 9 9 N 1.34778 * 119.99833 * 248.74910 * 7 5 4 10 10 C 1.46923 * 120.63367 * 5.51328 * 9 7 5 11 11 C 1.53182 * 108.77657 * 126.37074 * 10 9 7 12 12 C 1.53039 * 109.31427 * 54.63445 * 11 10 9 13 13 C 1.53041 * 109.53988 * 298.63719 * 12 11 10 14 14 C 1.46931 * 120.62902 * 185.49267 * 9 7 5 15 15 H 1.09005 * 109.58424 * 113.69522 * 14 9 7 16 16 C 1.53002 * 109.58612 * 353.42149 * 14 9 7 17 17 N 1.46497 * 109.46883 * 179.97438 * 16 14 9 18 18 C 1.34776 * 119.99861 * 174.98574 * 17 16 14 19 19 O 1.21281 * 120.00358 * 359.97438 * 18 17 16 20 20 C 1.50707 * 119.99980 * 179.97438 * 18 17 16 21 21 C 1.53000 * 109.47086 * 179.97438 * 20 18 17 22 22 N 1.46497 * 109.47118 * 179.97438 * 21 20 18 23 23 C 1.36939 * 119.99875 * 179.97438 * 22 21 20 24 24 H 1.07995 * 120.00160 * 0.02562 * 23 22 21 25 25 C 1.38817 * 119.99483 * 179.97438 * 23 22 21 26 26 N 1.31621 * 119.99655 * 180.02562 * 25 23 22 27 27 Si 1.86799 * 120.00196 * 0.02562 * 25 23 22 28 28 H 1.48501 * 109.47000 * 90.00292 * 27 25 23 29 29 H 1.48499 * 109.46960 * 209.99539 * 27 25 23 30 30 H 1.48493 * 109.47207 * 329.99784 * 27 25 23 31 31 H 1.08992 * 109.47346 * 274.31172 * 1 2 3 32 32 H 1.09000 * 109.47106 * 34.31351 * 1 2 3 33 33 H 1.08997 * 109.47000 * 154.30680 * 1 2 3 34 34 H 1.09000 * 117.51521 * 145.03626 * 4 2 1 35 35 H 1.08999 * 117.51424 * 359.97438 * 4 2 1 36 36 H 1.08997 * 109.58664 * 246.16129 * 10 9 7 37 37 H 1.09008 * 109.58223 * 6.44268 * 10 9 7 38 38 H 1.09001 * 109.50289 * 174.59023 * 11 10 9 39 39 H 1.09004 * 109.50034 * 294.65626 * 11 10 9 40 40 H 1.09003 * 109.45520 * 58.65765 * 12 11 10 41 41 H 1.08998 * 109.46636 * 178.61265 * 12 11 10 42 42 H 1.08994 * 109.49323 * 301.41035 * 13 12 11 43 43 H 1.09003 * 109.49748 * 181.31386 * 13 12 11 44 44 H 1.08995 * 109.47713 * 59.95208 * 16 14 9 45 45 H 1.09004 * 109.46476 * 299.95460 * 16 14 9 46 46 H 0.96996 * 120.00362 * 354.97579 * 17 16 14 47 47 H 1.08996 * 109.46662 * 299.99564 * 20 18 17 48 48 H 1.08995 * 109.47221 * 59.99560 * 20 18 17 49 49 H 1.09000 * 109.47014 * 299.99954 * 21 20 18 50 50 H 1.08995 * 109.47206 * 59.99849 * 21 20 18 51 51 H 0.97004 * 119.99950 * 0.02562 * 22 21 20 52 52 H 0.96995 * 119.99999 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2367 -1.1219 -0.7649 5 6 2.2364 -1.1210 0.7651 6 1 1.6111 -1.8582 1.2687 7 6 3.5292 -0.7810 1.4609 8 8 3.9709 0.3470 1.4026 9 7 4.1945 -1.7306 2.1480 10 6 3.7381 -3.1270 2.1287 11 6 4.9067 -4.0219 1.7046 12 6 6.1017 -3.7640 2.6252 13 6 6.5406 -2.3035 2.4972 14 6 5.3905 -1.3891 2.9303 15 1 5.1863 -1.5326 3.9914 16 6 5.7713 0.0705 2.6743 17 7 6.9634 0.4084 3.4558 18 6 7.5434 1.6164 3.3118 19 8 7.0788 2.4236 2.5350 20 6 8.7695 1.9643 4.1162 21 6 9.2241 3.3825 3.7655 22 7 10.4155 3.7209 4.5479 23 6 11.0054 4.9479 4.4009 24 1 10.5921 5.6663 3.7086 25 6 12.1341 5.2687 5.1427 26 7 12.7008 6.4482 5.0018 27 14 12.8486 4.0262 6.3407 28 1 13.8521 3.1845 5.6410 29 1 13.5015 4.7425 7.4658 30 1 11.7603 3.1642 6.8677 31 1 -0.3633 0.0773 1.0247 32 1 -0.3633 0.8488 -0.5793 33 1 -0.3633 -0.9260 -0.4455 34 1 3.1719 -0.8766 -1.2682 35 1 1.6117 -1.8599 -1.2676 36 1 3.4000 -3.4147 3.1242 37 1 2.9174 -3.2333 1.4192 38 1 4.6095 -5.0680 1.7787 39 1 5.1842 -3.7947 0.6753 40 1 5.8159 -3.9682 3.6571 41 1 6.9267 -4.4173 2.3411 42 1 6.8030 -2.0921 1.4606 43 1 7.4063 -2.1265 3.1355 44 1 4.9465 0.7186 2.9705 45 1 5.9805 0.2106 1.6137 46 1 7.3352 -0.2371 4.0769 47 1 8.5340 1.9102 5.1791 48 1 9.5680 1.2595 3.8847 49 1 9.4596 3.4361 2.7026 50 1 8.4257 4.0875 3.9968 51 1 10.7870 3.0754 5.1695 52 1 13.4896 6.6723 5.5198 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571667660.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:33 Heat of formation + Delta-G solvation = -55.767855 kcal Electronic energy + Delta-G solvation = -29512.666638 eV Core-core repulsion = 25512.316244 eV Total energy + Delta-G solvation = -4000.350394 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.93476 -40.68021 -39.05399 -37.62797 -37.04052 -36.02179 -34.01447 -33.90549 -32.64077 -31.23199 -29.67244 -28.12291 -26.35717 -25.46055 -24.93088 -23.40623 -22.81015 -22.03059 -21.54252 -21.31498 -19.89605 -19.67245 -18.52470 -18.00071 -17.23388 -16.87817 -16.80316 -16.48133 -16.27410 -15.68350 -15.55925 -15.39319 -15.33339 -15.17572 -14.82165 -14.64262 -14.51072 -14.35906 -14.08847 -14.01842 -13.70602 -13.51320 -13.34419 -13.04032 -12.92389 -12.84386 -12.63474 -12.42611 -12.35735 -12.20580 -12.07163 -11.98075 -11.81054 -11.67599 -11.55022 -11.32380 -11.02308 -11.01643 -10.95374 -10.38057 -10.15355 -9.59862 -9.36787 -8.04459 -5.41547 1.37811 1.39637 1.45326 1.52558 1.62893 1.67987 2.28842 2.49034 2.81642 3.25503 3.34409 3.56192 3.64044 3.73256 3.76343 3.83350 3.87171 3.88517 4.07844 4.12232 4.16306 4.23265 4.23418 4.27442 4.39680 4.49307 4.62002 4.62881 4.68964 4.73491 4.82100 4.87914 4.92221 4.95080 4.99315 5.01339 5.06190 5.08741 5.11362 5.15888 5.20444 5.22768 5.38660 5.39006 5.45748 5.56898 5.71709 6.17775 6.32257 6.53418 7.03763 7.11605 7.28460 7.74839 8.01978 9.17278 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016784 B = 0.002111 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.898941 B =13258.862530 C =14648.500406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.139 4.139 3 H 0.081 0.919 4 C -0.135 4.135 5 C -0.187 4.187 6 H 0.156 0.844 7 C 0.526 3.474 8 O -0.575 6.575 9 N -0.602 5.602 10 C 0.104 3.896 11 C -0.134 4.134 12 C -0.117 4.117 13 C -0.130 4.130 14 C 0.141 3.859 15 H 0.101 0.899 16 C 0.142 3.858 17 N -0.718 5.718 18 C 0.517 3.483 19 O -0.587 6.587 20 C -0.134 4.134 21 C 0.171 3.829 22 N -0.752 5.752 23 C -0.249 4.249 24 H 0.044 0.956 25 C -0.069 4.069 26 N -0.985 5.985 27 Si 0.970 3.030 28 H -0.272 1.272 29 H -0.294 1.294 30 H -0.241 1.241 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.137 0.863 36 H 0.091 0.909 37 H 0.106 0.894 38 H 0.101 0.899 39 H 0.054 0.946 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.047 0.953 43 H 0.089 0.911 44 H 0.056 0.944 45 H 0.044 0.956 46 H 0.415 0.585 47 H 0.122 0.878 48 H 0.124 0.876 49 H 0.013 0.987 50 H 0.011 0.989 51 H 0.373 0.627 52 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.585 -35.969 -5.210 45.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.158 4.158 3 H 0.099 0.901 4 C -0.172 4.172 5 C -0.207 4.207 6 H 0.174 0.826 7 C 0.316 3.684 8 O -0.454 6.454 9 N -0.335 5.335 10 C -0.017 4.017 11 C -0.172 4.172 12 C -0.154 4.154 13 C -0.169 4.169 14 C 0.037 3.963 15 H 0.119 0.881 16 C 0.019 3.981 17 N -0.374 5.374 18 C 0.304 3.696 19 O -0.467 6.467 20 C -0.174 4.174 21 C 0.044 3.956 22 N -0.399 5.399 23 C -0.380 4.380 24 H 0.062 0.938 25 C -0.260 4.260 26 N -0.635 5.635 27 Si 0.795 3.205 28 H -0.198 1.198 29 H -0.220 1.220 30 H -0.165 1.165 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.155 0.845 36 H 0.109 0.891 37 H 0.124 0.876 38 H 0.120 0.880 39 H 0.073 0.927 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.066 0.934 43 H 0.107 0.893 44 H 0.074 0.926 45 H 0.062 0.938 46 H 0.253 0.747 47 H 0.140 0.860 48 H 0.142 0.858 49 H 0.031 0.969 50 H 0.030 0.970 51 H 0.207 0.793 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -26.713 -34.641 -5.893 44.140 hybrid contribution 1.088 0.390 0.582 1.294 sum -25.625 -34.251 -5.310 43.104 Atomic orbital electron populations 1.21368 0.90105 1.03339 1.02515 1.22403 0.96767 0.93996 1.02628 0.90111 1.23173 1.02596 1.01410 0.90002 1.22406 0.96376 1.05731 0.96236 0.82648 1.20477 0.85635 0.84108 0.78176 1.90839 1.68797 1.23742 1.62060 1.48149 1.27177 1.09814 1.48371 1.22107 0.97947 0.77621 1.04058 1.21930 0.95068 1.00778 0.99385 1.21528 0.98547 0.94254 1.01093 1.22017 0.97145 0.95995 1.01710 1.21485 0.85971 0.92306 0.96527 0.88105 1.21747 0.86159 0.95395 0.94788 1.46050 1.30348 1.16063 1.44903 1.20842 0.85067 0.81560 0.82135 1.90727 1.65918 1.50473 1.39594 1.21706 0.95864 0.97722 1.02069 1.20297 0.87490 0.93963 0.93819 1.42528 1.32123 1.15208 1.50073 1.19001 1.07560 0.91967 1.19434 0.93832 1.25736 0.98452 0.99348 1.02439 1.69927 1.24018 1.23338 1.46233 0.85202 0.78876 0.78409 0.78018 1.19795 1.22011 1.16468 0.91847 0.91789 0.90170 0.90212 0.84499 0.89117 0.87601 0.88014 0.92714 0.89971 0.90683 0.93392 0.89300 0.92626 0.93787 0.74719 0.85972 0.85812 0.96919 0.97045 0.79284 0.93101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 10.19 71.98 0.73 -0.38 16 2 C -0.14 -2.14 5.92 -10.77 -0.06 -2.20 16 3 H 0.08 1.87 7.67 -2.38 -0.02 1.85 16 4 C -0.13 -1.54 9.88 30.62 0.30 -1.24 16 5 C -0.19 -2.41 4.53 -11.54 -0.05 -2.46 16 6 H 0.16 0.93 7.08 -2.39 -0.02 0.91 16 7 C 0.53 10.84 7.39 87.66 0.65 11.49 16 8 O -0.57 -18.32 11.66 -3.03 -0.04 -18.36 16 9 N -0.60 -8.55 2.97 -795.03 -2.36 -10.91 16 10 C 0.10 0.54 6.25 86.36 0.54 1.08 16 11 C -0.13 -0.60 6.08 30.67 0.19 -0.41 16 12 C -0.12 -0.67 5.88 30.62 0.18 -0.49 16 13 C -0.13 -1.49 5.12 30.67 0.16 -1.34 16 14 C 0.14 2.15 3.04 44.97 0.14 2.28 16 15 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 16 C 0.14 3.73 3.52 86.38 0.30 4.04 16 17 N -0.72 -16.87 5.24 -463.06 -2.43 -19.30 16 18 C 0.52 17.19 7.83 87.66 0.69 17.87 16 19 O -0.59 -26.70 15.98 -3.03 -0.05 -26.75 16 20 C -0.13 -4.06 5.81 29.85 0.17 -3.89 16 21 C 0.17 7.66 5.55 86.38 0.48 8.14 16 22 N -0.75 -37.68 5.41 -343.46 -1.86 -39.53 16 23 C -0.25 -15.39 10.47 84.03 0.88 -14.51 16 24 H 0.04 3.03 8.06 -2.91 -0.02 3.00 16 25 C -0.07 -4.22 5.50 84.86 0.47 -3.76 16 26 N -0.99 -65.79 13.97 21.65 0.30 -65.49 16 27 Si 0.97 45.62 27.74 68.60 1.90 47.52 16 28 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 29 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 30 H -0.24 -9.80 6.52 99.48 0.65 -9.15 16 31 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.08 0.41 7.90 -2.39 -0.02 0.39 16 34 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.14 0.67 8.05 -2.39 -0.02 0.65 16 36 H 0.09 0.17 8.14 -2.39 -0.02 0.15 16 37 H 0.11 0.22 5.87 -2.38 -0.01 0.21 16 38 H 0.10 0.02 8.14 -2.39 -0.02 0.00 16 39 H 0.05 0.42 8.14 -2.39 -0.02 0.41 16 40 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 41 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 42 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.09 0.81 7.19 -2.39 -0.02 0.79 16 44 H 0.06 1.86 6.45 -2.39 -0.02 1.85 16 45 H 0.04 1.51 7.03 -2.39 -0.02 1.49 16 46 H 0.42 5.92 7.59 -92.71 -0.70 5.21 16 47 H 0.12 3.04 8.14 -2.39 -0.02 3.02 16 48 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 49 H 0.01 0.62 8.10 -2.39 -0.02 0.61 16 50 H 0.01 0.57 8.10 -2.39 -0.02 0.55 16 51 H 0.37 16.53 5.53 -92.71 -0.51 16.02 16 52 H 0.26 16.33 8.31 -92.71 -0.77 15.55 16 Total: -1.00 -92.81 407.30 0.88 -91.94 By element: Atomic # 1 Polarization: 27.01 SS G_CDS: -0.36 Total: 26.66 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: 5.76 Total: 14.22 kcal Atomic # 7 Polarization: -128.89 SS G_CDS: -6.34 Total: -135.23 kcal Atomic # 8 Polarization: -45.02 SS G_CDS: -0.08 Total: -45.11 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.90 Total: 47.52 kcal Total: -92.81 0.88 -91.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571667660.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.169 kcal (2) G-P(sol) polarization free energy of solvation -92.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds