Wall clock time and date at job start Tue Mar 31 2020 22:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 115.54898 * 2 1 4 4 C 1.52999 * 117.49699 * 214.33694 * 2 1 3 5 5 C 1.52999 * 117.49964 * 145.71514 * 2 1 3 6 6 H 1.08998 * 117.50018 * 359.97438 * 5 2 1 7 7 C 1.50700 * 117.49457 * 214.97776 * 5 2 1 8 8 O 1.21277 * 120.00269 * 359.97438 * 7 5 2 9 9 N 1.34778 * 119.99390 * 179.97438 * 7 5 2 10 10 C 1.46927 * 120.63416 * 354.09891 * 9 7 5 11 11 C 1.52766 * 109.00762 * 233.58096 * 10 9 7 12 12 C 1.53041 * 109.38436 * 305.58884 * 11 10 9 13 13 C 1.53036 * 109.53780 * 61.23894 * 12 11 10 14 14 C 1.46932 * 120.62787 * 174.37881 * 9 7 5 15 15 H 1.09004 * 109.58424 * 246.16013 * 14 9 7 16 16 C 1.52999 * 109.58486 * 6.43560 * 14 9 7 17 17 N 1.46495 * 109.47557 * 292.96421 * 16 14 9 18 18 C 1.34780 * 120.00273 * 185.83756 * 17 16 14 19 19 O 1.21275 * 119.99525 * 0.02562 * 18 17 16 20 20 C 1.50694 * 119.99944 * 179.97438 * 18 17 16 21 21 C 1.53003 * 109.46903 * 180.02562 * 20 18 17 22 22 N 1.46504 * 109.46964 * 180.02562 * 21 20 18 23 23 C 1.36940 * 119.99916 * 180.02562 * 22 21 20 24 24 H 1.08006 * 119.99786 * 359.97438 * 23 22 21 25 25 C 1.38813 * 120.00313 * 179.97438 * 23 22 21 26 26 N 1.31620 * 119.99337 * 359.97438 * 25 23 22 27 27 Si 1.86792 * 120.00443 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.47270 * 89.99728 * 27 25 23 29 29 H 1.48494 * 109.47403 * 210.00284 * 27 25 23 30 30 H 1.48507 * 109.46945 * 330.00035 * 27 25 23 31 31 H 1.09001 * 109.47503 * 154.27203 * 1 2 3 32 32 H 1.08996 * 109.47168 * 274.27582 * 1 2 3 33 33 H 1.09004 * 109.47175 * 34.27327 * 1 2 3 34 34 H 1.09003 * 117.50257 * 359.97438 * 4 2 1 35 35 H 1.08997 * 117.49851 * 145.02101 * 4 2 1 36 36 H 1.08997 * 109.58261 * 353.41696 * 10 9 7 37 37 H 1.09004 * 109.58732 * 113.84299 * 10 9 7 38 38 H 1.08994 * 109.56379 * 185.54945 * 11 10 9 39 39 H 1.08998 * 109.38294 * 65.51681 * 11 10 9 40 40 H 1.08996 * 109.45817 * 301.22112 * 12 11 10 41 41 H 1.08996 * 109.45749 * 181.26012 * 12 11 10 42 42 H 1.09000 * 109.49899 * 178.68340 * 13 12 11 43 43 H 1.09001 * 109.49875 * 58.58755 * 13 12 11 44 44 H 1.08999 * 109.46728 * 52.96998 * 16 14 9 45 45 H 1.09000 * 109.46786 * 172.96389 * 16 14 9 46 46 H 0.97004 * 120.00035 * 5.84794 * 17 16 14 47 47 H 1.08996 * 109.47671 * 300.00758 * 20 18 17 48 48 H 1.09001 * 109.46976 * 60.00920 * 20 18 17 49 49 H 1.08996 * 109.47166 * 299.99917 * 21 20 18 50 50 H 1.08994 * 109.47423 * 60.00501 * 21 20 18 51 51 H 0.96993 * 120.00023 * 359.97438 * 22 21 20 52 52 H 0.97008 * 119.99563 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1207 -0.7655 5 6 2.2365 -1.1213 0.7645 6 1 1.6113 -1.8588 1.2678 7 6 3.5293 -0.7817 1.4604 8 8 3.9720 0.3459 1.4009 9 7 4.1935 -1.7310 2.1489 10 6 3.6084 -3.0653 2.3391 11 6 3.6001 -3.3970 3.8303 12 6 5.0154 -3.2449 4.3924 13 6 5.4816 -1.7975 4.2204 14 6 5.5138 -1.4494 2.7289 15 1 6.2694 -2.0550 2.2285 16 6 5.8458 0.0337 2.5523 17 7 6.0257 0.3277 1.1285 18 6 6.4410 1.5496 0.7398 19 8 6.6662 2.4055 1.5690 20 6 6.6267 1.8518 -0.7248 21 6 7.1007 3.2970 -0.8912 22 7 7.2806 3.5910 -2.3151 23 6 7.7035 4.8322 -2.7099 24 1 7.9040 5.5945 -1.9715 25 6 7.8745 5.1107 -4.0590 26 7 7.6306 4.1815 -4.9587 27 14 8.4506 6.8040 -4.5975 28 1 9.9341 6.8255 -4.6597 29 1 7.8943 7.1126 -5.9393 30 1 7.9812 7.8201 -3.6215 31 1 -0.3634 -0.9258 -0.4461 32 1 -0.3633 0.0766 1.0248 33 1 -0.3634 0.8492 -0.5787 34 1 1.6112 -1.8582 -1.2688 35 1 3.1715 -0.8746 -1.2687 36 1 2.5871 -3.0740 1.9584 37 1 4.2055 -3.8054 1.8063 38 1 3.2597 -4.4224 3.9742 39 1 2.9273 -2.7142 4.3490 40 1 5.6923 -3.9105 3.8567 41 1 5.0152 -3.5030 5.4513 42 1 6.4804 -1.6845 4.6419 43 1 4.7912 -1.1293 4.7351 44 1 5.0296 0.6382 2.9479 45 1 6.7646 0.2669 3.0904 46 1 5.8458 -0.3570 0.4653 47 1 7.3711 1.1750 -1.1440 48 1 5.6790 1.7177 -1.2464 49 1 6.3565 3.9741 -0.4720 50 1 8.0484 3.4309 -0.3697 51 1 7.1009 2.9063 -2.9782 52 1 7.7497 4.3762 -5.9015 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571667661.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:44 Heat of formation + Delta-G solvation = -9.878285 kcal Electronic energy + Delta-G solvation = -30413.605182 eV Core-core repulsion = 26415.244709 eV Total energy + Delta-G solvation = -3998.360473 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.22045 -38.99925 -38.32959 -36.83911 -34.86684 -34.37842 -33.27557 -32.03898 -31.53482 -29.08291 -28.94316 -27.01420 -25.14873 -24.45582 -23.81510 -22.26069 -21.50389 -21.11761 -20.73191 -19.88984 -19.13469 -17.64564 -17.06361 -16.45960 -16.20214 -15.83480 -15.70194 -15.32121 -15.01991 -14.75140 -14.42078 -14.26925 -14.18991 -13.77052 -13.49336 -13.45407 -13.32834 -13.08084 -12.97278 -12.95125 -12.59736 -12.39112 -12.25548 -12.23675 -11.68222 -11.63725 -11.43917 -11.15774 -11.05452 -10.91576 -10.89258 -10.66135 -10.60929 -10.59211 -10.27933 -9.99549 -9.61250 -9.45083 -9.17567 -9.07650 -8.75338 -8.29347 -6.79626 -5.66110 -2.93549 2.28038 2.54820 3.26303 3.52146 3.53279 3.55708 3.57185 3.60256 4.04277 4.23239 4.38802 4.40379 4.50622 4.52787 4.60100 4.69466 4.71300 4.78750 4.83687 4.99319 5.07952 5.12321 5.27375 5.30915 5.32497 5.38487 5.44123 5.45755 5.49689 5.55063 5.56692 5.63277 5.66696 5.69457 5.76845 5.81953 5.82626 5.88644 6.00241 6.10362 6.28910 6.30187 6.41524 6.79651 7.05416 7.09364 7.10399 7.83259 7.88603 8.01556 8.53444 8.76831 9.64300 10.22440 10.58242 11.57414 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013872 B = 0.002585 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.918103 B =10830.638995 C =12249.607558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 H 0.119 0.881 4 C -0.147 4.147 5 C -0.194 4.194 6 H 0.119 0.881 7 C 0.526 3.474 8 O -0.496 6.496 9 N -0.612 5.612 10 C 0.110 3.890 11 C -0.137 4.137 12 C -0.118 4.118 13 C -0.128 4.128 14 C 0.136 3.864 15 H 0.078 0.922 16 C 0.135 3.865 17 N -0.703 5.703 18 C 0.524 3.476 19 O -0.548 6.548 20 C -0.143 4.143 21 C 0.170 3.830 22 N -0.736 5.736 23 C -0.231 4.231 24 H 0.071 0.929 25 C -0.018 4.018 26 N -0.938 5.938 27 Si 0.908 3.092 28 H -0.290 1.290 29 H -0.292 1.292 30 H -0.282 1.282 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.083 0.917 45 H 0.062 0.938 46 H 0.390 0.610 47 H 0.086 0.914 48 H 0.088 0.912 49 H 0.027 0.973 50 H 0.026 0.974 51 H 0.382 0.618 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.929 -24.703 18.178 33.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.140 4.140 3 H 0.137 0.863 4 C -0.184 4.184 5 C -0.215 4.215 6 H 0.137 0.863 7 C 0.314 3.686 8 O -0.370 6.370 9 N -0.348 5.348 10 C -0.013 4.013 11 C -0.176 4.176 12 C -0.156 4.156 13 C -0.167 4.167 14 C 0.033 3.967 15 H 0.096 0.904 16 C 0.011 3.989 17 N -0.354 5.354 18 C 0.311 3.689 19 O -0.426 6.426 20 C -0.184 4.184 21 C 0.042 3.958 22 N -0.380 5.380 23 C -0.363 4.363 24 H 0.089 0.911 25 C -0.214 4.214 26 N -0.587 5.587 27 Si 0.739 3.261 28 H -0.218 1.218 29 H -0.218 1.218 30 H -0.207 1.207 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.105 0.895 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.097 0.903 43 H 0.090 0.910 44 H 0.101 0.899 45 H 0.080 0.920 46 H 0.223 0.777 47 H 0.104 0.896 48 H 0.107 0.893 49 H 0.045 0.955 50 H 0.044 0.956 51 H 0.215 0.785 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -13.476 -23.264 18.762 32.785 hybrid contribution 0.071 -0.008 -0.819 0.822 sum -13.406 -23.272 17.943 32.299 Atomic orbital electron populations 1.21394 0.92349 1.02267 1.02009 1.22399 0.95172 0.95303 1.01087 0.86274 1.23097 1.03385 1.01567 0.90383 1.22370 0.97966 1.05333 0.95851 0.86298 1.19772 0.84947 0.84988 0.78897 1.90978 1.65630 1.20422 1.59958 1.48013 1.19105 1.12905 1.54774 1.21662 0.99480 0.83717 0.96458 1.21873 0.97850 1.02117 0.95736 1.21496 0.96335 0.96376 1.01391 1.21894 1.02748 0.97184 0.94898 1.21542 0.84133 0.96884 0.94180 0.90398 1.21337 1.01325 0.92683 0.83583 1.45832 1.68237 1.14092 1.07270 1.20573 0.75578 0.81380 0.91337 1.90645 1.51195 1.46009 1.54703 1.21764 1.03259 1.01089 0.92276 1.20346 0.97928 0.90504 0.86994 1.42371 1.81469 1.13423 1.00743 1.19282 1.36035 0.89695 0.91260 0.91082 1.24728 1.02882 0.97988 0.95760 1.69668 1.56079 1.32697 1.00294 0.86158 0.78291 0.83944 0.77682 1.21787 1.21839 1.20739 0.92502 0.92155 0.91489 0.87944 0.88077 0.89466 0.91317 0.90602 0.91426 0.91592 0.91389 0.90260 0.91025 0.89853 0.91973 0.77666 0.89564 0.89333 0.95512 0.95596 0.78504 0.93671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.89 10.19 37.16 0.38 -0.51 16 2 C -0.12 -1.12 5.92 -90.62 -0.54 -1.66 16 3 H 0.12 1.45 7.67 -51.93 -0.40 1.05 16 4 C -0.15 -1.17 9.88 -26.73 -0.26 -1.44 16 5 C -0.19 -1.56 5.00 -91.77 -0.46 -2.02 16 6 H 0.12 0.70 6.35 -51.93 -0.33 0.37 16 7 C 0.53 5.36 6.75 -10.99 -0.07 5.29 16 8 O -0.50 -7.04 9.91 5.56 0.06 -6.98 16 9 N -0.61 -4.72 2.98 -165.47 -0.49 -5.21 16 10 C 0.11 0.52 6.30 -3.93 -0.02 0.50 16 11 C -0.14 -0.56 6.06 -26.83 -0.16 -0.73 16 12 C -0.12 -0.54 5.89 -26.69 -0.16 -0.70 16 13 C -0.13 -0.82 5.38 -26.61 -0.14 -0.96 16 14 C 0.14 1.11 2.95 -67.60 -0.20 0.91 16 15 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 16 C 0.13 1.66 4.30 -4.04 -0.02 1.64 16 17 N -0.70 -9.85 3.13 -60.30 -0.19 -10.04 16 18 C 0.52 9.63 7.50 -10.99 -0.08 9.55 16 19 O -0.55 -12.21 15.97 5.56 0.09 -12.12 16 20 C -0.14 -2.69 5.81 -27.88 -0.16 -2.85 16 21 C 0.17 4.05 5.55 -4.04 -0.02 4.02 16 22 N -0.74 -20.34 5.60 -59.91 -0.34 -20.68 16 23 C -0.23 -6.99 9.99 -15.06 -0.15 -7.14 16 24 H 0.07 2.11 7.83 -52.48 -0.41 1.70 16 25 C -0.02 -0.56 5.50 -17.43 -0.10 -0.65 16 26 N -0.94 -29.47 13.06 55.49 0.72 -28.75 16 27 Si 0.91 23.56 29.55 -169.99 -5.02 18.53 16 28 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 29 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 30 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 31 H 0.06 0.34 7.90 -51.93 -0.41 -0.07 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.10 0.63 8.05 -51.93 -0.42 0.21 16 35 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.09 0.33 5.48 -51.93 -0.28 0.05 16 37 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 39 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.08 1.25 6.49 -51.93 -0.34 0.91 16 45 H 0.06 0.79 8.12 -51.93 -0.42 0.37 16 46 H 0.39 4.75 7.62 -40.82 -0.31 4.44 16 47 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 48 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 49 H 0.03 0.68 8.10 -51.93 -0.42 0.26 16 50 H 0.03 0.65 8.10 -51.93 -0.42 0.23 16 51 H 0.38 10.72 7.67 -40.82 -0.31 10.41 16 52 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 408.01 15.07 6.15 6.15 Total: -1.00 -36.88 408.01 -10.30 -47.18 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -9.11 Total: 8.65 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -2.17 Total: 3.26 kcal Atomic # 7 Polarization: -64.38 SS G_CDS: -0.29 Total: -64.67 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: 0.14 Total: -19.10 kcal Atomic # 14 Polarization: 23.56 SS G_CDS: -5.02 Total: 18.53 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.88 -10.30 -47.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571667661.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.305 kcal (2) G-P(sol) polarization free energy of solvation -36.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds