Wall clock time and date at job start Tue Mar 31 2020 22:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 115.54898 * 2 1 4 4 C 1.52999 * 117.49699 * 214.33694 * 2 1 3 5 5 C 1.52999 * 117.49964 * 145.71514 * 2 1 3 6 6 H 1.08998 * 117.50018 * 359.97438 * 5 2 1 7 7 C 1.50700 * 117.49457 * 214.97776 * 5 2 1 8 8 O 1.21277 * 120.00269 * 359.97438 * 7 5 2 9 9 N 1.34778 * 119.99390 * 179.97438 * 7 5 2 10 10 C 1.46927 * 120.63416 * 354.09891 * 9 7 5 11 11 C 1.52766 * 109.00762 * 233.58096 * 10 9 7 12 12 C 1.53041 * 109.38436 * 305.58884 * 11 10 9 13 13 C 1.53036 * 109.53780 * 61.23894 * 12 11 10 14 14 C 1.46932 * 120.62787 * 174.37881 * 9 7 5 15 15 H 1.09004 * 109.58424 * 246.16013 * 14 9 7 16 16 C 1.52999 * 109.58486 * 6.43560 * 14 9 7 17 17 N 1.46495 * 109.47557 * 292.96421 * 16 14 9 18 18 C 1.34780 * 120.00273 * 185.83756 * 17 16 14 19 19 O 1.21275 * 119.99525 * 0.02562 * 18 17 16 20 20 C 1.50694 * 119.99944 * 179.97438 * 18 17 16 21 21 C 1.53003 * 109.46903 * 180.02562 * 20 18 17 22 22 N 1.46504 * 109.46964 * 180.02562 * 21 20 18 23 23 C 1.36940 * 119.99916 * 180.02562 * 22 21 20 24 24 H 1.08006 * 119.99786 * 359.97438 * 23 22 21 25 25 C 1.38813 * 120.00313 * 179.97438 * 23 22 21 26 26 N 1.31620 * 119.99337 * 359.97438 * 25 23 22 27 27 Si 1.86792 * 120.00443 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.47270 * 89.99728 * 27 25 23 29 29 H 1.48494 * 109.47403 * 210.00284 * 27 25 23 30 30 H 1.48507 * 109.46945 * 330.00035 * 27 25 23 31 31 H 1.09001 * 109.47503 * 154.27203 * 1 2 3 32 32 H 1.08996 * 109.47168 * 274.27582 * 1 2 3 33 33 H 1.09004 * 109.47175 * 34.27327 * 1 2 3 34 34 H 1.09003 * 117.50257 * 359.97438 * 4 2 1 35 35 H 1.08997 * 117.49851 * 145.02101 * 4 2 1 36 36 H 1.08997 * 109.58261 * 353.41696 * 10 9 7 37 37 H 1.09004 * 109.58732 * 113.84299 * 10 9 7 38 38 H 1.08994 * 109.56379 * 185.54945 * 11 10 9 39 39 H 1.08998 * 109.38294 * 65.51681 * 11 10 9 40 40 H 1.08996 * 109.45817 * 301.22112 * 12 11 10 41 41 H 1.08996 * 109.45749 * 181.26012 * 12 11 10 42 42 H 1.09000 * 109.49899 * 178.68340 * 13 12 11 43 43 H 1.09001 * 109.49875 * 58.58755 * 13 12 11 44 44 H 1.08999 * 109.46728 * 52.96998 * 16 14 9 45 45 H 1.09000 * 109.46786 * 172.96389 * 16 14 9 46 46 H 0.97004 * 120.00035 * 5.84794 * 17 16 14 47 47 H 1.08996 * 109.47671 * 300.00758 * 20 18 17 48 48 H 1.09001 * 109.46976 * 60.00920 * 20 18 17 49 49 H 1.08996 * 109.47166 * 299.99917 * 21 20 18 50 50 H 1.08994 * 109.47423 * 60.00501 * 21 20 18 51 51 H 0.96993 * 120.00023 * 359.97438 * 22 21 20 52 52 H 0.97008 * 119.99563 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1207 -0.7655 5 6 2.2365 -1.1213 0.7645 6 1 1.6113 -1.8588 1.2678 7 6 3.5293 -0.7817 1.4604 8 8 3.9720 0.3459 1.4009 9 7 4.1935 -1.7310 2.1489 10 6 3.6084 -3.0653 2.3391 11 6 3.6001 -3.3970 3.8303 12 6 5.0154 -3.2449 4.3924 13 6 5.4816 -1.7975 4.2204 14 6 5.5138 -1.4494 2.7289 15 1 6.2694 -2.0550 2.2285 16 6 5.8458 0.0337 2.5523 17 7 6.0257 0.3277 1.1285 18 6 6.4410 1.5496 0.7398 19 8 6.6662 2.4055 1.5690 20 6 6.6267 1.8518 -0.7248 21 6 7.1007 3.2970 -0.8912 22 7 7.2806 3.5910 -2.3151 23 6 7.7035 4.8322 -2.7099 24 1 7.9040 5.5945 -1.9715 25 6 7.8745 5.1107 -4.0590 26 7 7.6306 4.1815 -4.9587 27 14 8.4506 6.8040 -4.5975 28 1 9.9341 6.8255 -4.6597 29 1 7.8943 7.1126 -5.9393 30 1 7.9812 7.8201 -3.6215 31 1 -0.3634 -0.9258 -0.4461 32 1 -0.3633 0.0766 1.0248 33 1 -0.3634 0.8492 -0.5787 34 1 1.6112 -1.8582 -1.2688 35 1 3.1715 -0.8746 -1.2687 36 1 2.5871 -3.0740 1.9584 37 1 4.2055 -3.8054 1.8063 38 1 3.2597 -4.4224 3.9742 39 1 2.9273 -2.7142 4.3490 40 1 5.6923 -3.9105 3.8567 41 1 5.0152 -3.5030 5.4513 42 1 6.4804 -1.6845 4.6419 43 1 4.7912 -1.1293 4.7351 44 1 5.0296 0.6382 2.9479 45 1 6.7646 0.2669 3.0904 46 1 5.8458 -0.3570 0.4653 47 1 7.3711 1.1750 -1.1440 48 1 5.6790 1.7177 -1.2464 49 1 6.3565 3.9741 -0.4720 50 1 8.0484 3.4309 -0.3697 51 1 7.1009 2.9063 -2.9782 52 1 7.7497 4.3762 -5.9015 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571667661.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:40 Heat of formation + Delta-G solvation = -34.370388 kcal Electronic energy + Delta-G solvation = -30414.667239 eV Core-core repulsion = 26415.244709 eV Total energy + Delta-G solvation = -3999.422530 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.46 seconds Orbital eigenvalues (eV) -42.02350 -40.39259 -38.98205 -37.61090 -36.83402 -35.63127 -33.90307 -33.85079 -32.66426 -30.83437 -29.62421 -27.94057 -26.33669 -25.48807 -24.98441 -23.48817 -22.77845 -21.82182 -21.56942 -21.10950 -19.88550 -19.34603 -18.33951 -17.65056 -17.16383 -16.92158 -16.86220 -16.53563 -16.15458 -15.92891 -15.46793 -15.34006 -15.15016 -14.92456 -14.76282 -14.52627 -14.43023 -14.22150 -14.04300 -13.74112 -13.58443 -13.55619 -13.16208 -13.03151 -12.88527 -12.85266 -12.57072 -12.43130 -12.33331 -12.17652 -12.12278 -11.91313 -11.85707 -11.62303 -11.49824 -11.30099 -11.00191 -10.91277 -10.85145 -10.17479 -9.95817 -9.34749 -9.07532 -7.99425 -5.29752 1.45019 1.47600 1.47981 1.56988 1.79204 1.90970 2.29044 2.56236 2.88107 3.33415 3.38311 3.72388 3.74791 3.77611 3.83285 3.92936 3.96719 4.03043 4.09377 4.17291 4.20394 4.22028 4.27516 4.37437 4.42622 4.50683 4.60920 4.67638 4.69193 4.78624 4.82778 4.87851 4.93147 4.94915 5.00820 5.06745 5.09272 5.11289 5.11804 5.18944 5.22010 5.24581 5.40617 5.44498 5.46811 5.55073 5.65414 6.22861 6.42275 6.59206 7.25742 7.29211 7.36017 7.99045 8.28967 9.24050 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013872 B = 0.002585 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.918103 B =10830.638995 C =12249.607558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.142 4.142 3 H 0.078 0.922 4 C -0.136 4.136 5 C -0.182 4.182 6 H 0.150 0.850 7 C 0.519 3.481 8 O -0.549 6.549 9 N -0.605 5.605 10 C 0.104 3.896 11 C -0.134 4.134 12 C -0.115 4.115 13 C -0.125 4.125 14 C 0.142 3.858 15 H 0.096 0.904 16 C 0.137 3.863 17 N -0.677 5.677 18 C 0.522 3.478 19 O -0.596 6.596 20 C -0.129 4.129 21 C 0.176 3.824 22 N -0.742 5.742 23 C -0.255 4.255 24 H 0.068 0.932 25 C -0.071 4.071 26 N -0.966 5.966 27 Si 0.979 3.021 28 H -0.282 1.282 29 H -0.287 1.287 30 H -0.274 1.274 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.131 0.869 35 H 0.084 0.916 36 H 0.102 0.898 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.056 0.944 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.085 0.915 43 H 0.056 0.944 44 H 0.054 0.946 45 H 0.056 0.944 46 H 0.402 0.598 47 H 0.108 0.892 48 H 0.096 0.904 49 H 0.005 0.995 50 H 0.014 0.986 51 H 0.378 0.622 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.644 -27.695 18.356 36.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.161 4.161 3 H 0.096 0.904 4 C -0.173 4.173 5 C -0.202 4.202 6 H 0.168 0.832 7 C 0.308 3.692 8 O -0.427 6.427 9 N -0.340 5.340 10 C -0.017 4.017 11 C -0.172 4.172 12 C -0.152 4.152 13 C -0.164 4.164 14 C 0.039 3.961 15 H 0.114 0.886 16 C 0.013 3.987 17 N -0.327 5.327 18 C 0.309 3.691 19 O -0.478 6.478 20 C -0.169 4.169 21 C 0.048 3.952 22 N -0.386 5.386 23 C -0.387 4.387 24 H 0.086 0.914 25 C -0.263 4.263 26 N -0.616 5.616 27 Si 0.806 3.194 28 H -0.209 1.209 29 H -0.213 1.213 30 H -0.199 1.199 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.149 0.851 35 H 0.102 0.898 36 H 0.120 0.880 37 H 0.104 0.896 38 H 0.117 0.883 39 H 0.075 0.925 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.103 0.897 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.237 0.763 47 H 0.126 0.874 48 H 0.114 0.886 49 H 0.023 0.977 50 H 0.032 0.968 51 H 0.210 0.790 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -14.213 -26.353 18.972 35.446 hybrid contribution 0.266 0.874 -0.815 1.224 sum -13.947 -25.480 18.157 34.255 Atomic orbital electron populations 1.21357 0.90611 1.03067 1.02322 1.22326 0.96497 0.94045 1.03276 0.90392 1.23142 1.02752 1.01136 0.90292 1.22406 0.96933 1.04952 0.95939 0.83222 1.20239 0.85589 0.84586 0.78804 1.90967 1.67177 1.22533 1.61986 1.48119 1.18627 1.13774 1.53435 1.21968 1.00427 0.81961 0.97372 1.21869 0.97298 1.03190 0.94856 1.21498 0.96822 0.94662 1.02250 1.21885 1.02939 0.98526 0.93055 1.21510 0.84928 0.93789 0.95904 0.88623 1.21352 0.99899 0.95475 0.81933 1.45628 1.65733 1.12739 1.08572 1.20458 0.75754 0.82238 0.90640 1.90621 1.53861 1.47685 1.55593 1.21558 1.04019 0.98155 0.93169 1.20262 0.96719 0.93361 0.84810 1.42468 1.81336 1.12763 1.02009 1.19604 1.36634 0.90693 0.91770 0.91411 1.25606 1.03010 1.02106 0.95605 1.69810 1.56666 1.34640 1.00503 0.85075 0.77904 0.79164 0.77210 1.20911 1.21337 1.19904 0.90332 0.91845 0.92274 0.85125 0.89771 0.88017 0.89555 0.88288 0.92510 0.90461 0.90549 0.89662 0.92543 0.92807 0.92636 0.76316 0.87428 0.88564 0.97685 0.96828 0.78952 0.93641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.57 10.19 71.98 0.73 -0.84 16 2 C -0.14 -2.66 5.92 -10.79 -0.06 -2.72 16 3 H 0.08 2.11 7.67 -2.39 -0.02 2.09 16 4 C -0.14 -1.97 9.88 30.59 0.30 -1.67 16 5 C -0.18 -2.64 5.00 -11.54 -0.06 -2.70 16 6 H 0.15 1.22 6.35 -2.39 -0.02 1.21 16 7 C 0.52 10.34 6.75 87.66 0.59 10.93 16 8 O -0.55 -16.34 9.91 -3.02 -0.03 -16.37 16 9 N -0.61 -8.27 2.98 -795.83 -2.37 -10.64 16 10 C 0.10 0.62 6.30 86.22 0.54 1.16 16 11 C -0.13 -0.63 6.06 30.53 0.19 -0.45 16 12 C -0.11 -0.69 5.89 30.62 0.18 -0.51 16 13 C -0.13 -1.41 5.38 30.67 0.16 -1.25 16 14 C 0.14 2.14 2.95 44.97 0.13 2.27 16 15 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 16 C 0.14 3.48 4.30 86.38 0.37 3.85 16 17 N -0.68 -19.42 3.13 -463.08 -1.45 -20.86 16 18 C 0.52 19.98 7.50 87.65 0.66 20.64 16 19 O -0.60 -28.06 15.97 -3.01 -0.05 -28.11 16 20 C -0.13 -4.96 5.81 29.85 0.17 -4.78 16 21 C 0.18 8.72 5.55 86.38 0.48 9.20 16 22 N -0.74 -42.13 5.60 -343.44 -1.92 -44.06 16 23 C -0.26 -15.71 9.99 84.03 0.84 -14.87 16 24 H 0.07 4.12 7.83 -2.91 -0.02 4.09 16 25 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 26 N -0.97 -61.01 13.06 21.65 0.28 -60.72 16 27 Si 0.98 48.58 29.55 68.60 2.03 50.61 16 28 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 29 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 30 H -0.27 -13.15 7.11 99.48 0.71 -12.44 16 31 H 0.08 0.72 7.90 -2.39 -0.02 0.70 16 32 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.13 1.16 8.05 -2.39 -0.02 1.15 16 35 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.10 0.34 5.48 -2.39 -0.01 0.32 16 37 H 0.09 0.30 8.14 -2.38 -0.02 0.28 16 38 H 0.10 0.09 8.14 -2.39 -0.02 0.07 16 39 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 40 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 41 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 42 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.05 1.73 6.49 -2.39 -0.02 1.72 16 45 H 0.06 1.48 8.12 -2.39 -0.02 1.46 16 46 H 0.40 9.64 7.62 -92.71 -0.71 8.94 16 47 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 48 H 0.10 3.56 8.14 -2.39 -0.02 3.54 16 49 H 0.01 0.27 8.10 -2.39 -0.02 0.26 16 50 H 0.01 0.71 8.10 -2.39 -0.02 0.69 16 51 H 0.38 21.69 7.67 -92.71 -0.71 20.98 16 52 H 0.25 15.38 8.31 -92.70 -0.77 14.61 16 Total: -1.00 -83.26 408.01 1.69 -81.57 By element: Atomic # 1 Polarization: 34.65 SS G_CDS: -0.50 Total: 34.15 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: 5.70 Total: 14.42 kcal Atomic # 7 Polarization: -130.82 SS G_CDS: -5.46 Total: -136.28 kcal Atomic # 8 Polarization: -44.39 SS G_CDS: -0.08 Total: -44.47 kcal Atomic # 14 Polarization: 48.58 SS G_CDS: 2.03 Total: 50.61 kcal Total: -83.26 1.69 -81.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571667661.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.204 kcal (2) G-P(sol) polarization free energy of solvation -83.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.47 seconds