Wall clock time and date at job start Tue Mar 31 2020 20:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46510 * 2 1 4 4 C 1.53077 * 109.45988 * 240.01264 * 2 1 3 5 5 C 1.53005 * 109.41968 * 180.69650 * 4 2 1 6 6 C 1.53005 * 109.55689 * 60.35426 * 5 4 2 7 7 C 1.53076 * 109.42656 * 299.65284 * 6 5 4 8 8 C 1.52567 * 109.50376 * 59.28691 * 7 6 5 9 9 C 1.53622 * 110.17178 * 179.05022 * 8 7 6 10 10 C 1.51300 * 104.15843 * 241.11144 * 9 8 7 11 11 O 1.21271 * 125.60072 * 180.02562 * 10 9 8 12 12 N 1.34115 * 108.79248 * 359.72578 * 10 9 8 13 13 N 1.39465 * 113.04723 * 0.47025 * 12 10 9 14 14 C 1.34775 * 125.41460 * 179.78467 * 13 12 10 15 15 O 1.21290 * 119.99543 * 179.14100 * 14 13 12 16 16 C 1.50702 * 120.00646 * 359.14709 * 14 13 12 17 17 H 1.09007 * 109.46746 * 39.99139 * 16 14 13 18 18 N 1.46893 * 109.47310 * 159.99502 * 16 14 13 19 19 C 1.53000 * 109.46780 * 280.00275 * 16 14 13 20 20 C 1.53000 * 109.46961 * 174.99747 * 19 16 14 21 21 C 1.52998 * 109.47044 * 179.97438 * 20 19 16 22 22 C 1.50699 * 109.46924 * 180.02562 * 21 20 19 23 23 H 1.08000 * 120.00527 * 0.02562 * 22 21 20 24 24 C 1.37886 * 119.99925 * 179.97438 * 22 21 20 25 25 N 1.31516 * 119.99787 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 119.99992 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47100 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.47009 * 120.00282 * 26 24 22 29 29 H 1.48497 * 109.47140 * 240.00296 * 26 24 22 30 30 H 1.08991 * 109.47356 * 300.01409 * 1 2 3 31 31 H 1.09002 * 109.47061 * 60.01766 * 1 2 3 32 32 H 1.09004 * 109.47082 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.48461 * 300.68190 * 4 2 1 34 34 H 1.09002 * 109.47798 * 60.71761 * 4 2 1 35 35 H 1.09003 * 109.45756 * 180.37714 * 5 4 2 36 36 H 1.09000 * 109.46173 * 300.34459 * 5 4 2 37 37 H 1.08993 * 109.47599 * 59.64147 * 6 5 4 38 38 H 1.08997 * 109.47639 * 179.65253 * 6 5 4 39 39 H 1.09006 * 109.46642 * 299.27313 * 7 6 5 40 40 H 1.08997 * 109.46160 * 179.29882 * 7 6 5 41 41 H 1.09000 * 110.49184 * 359.77620 * 9 8 7 42 42 H 1.08993 * 110.49428 * 122.44205 * 9 8 7 43 43 H 0.97006 * 123.47570 * 180.25824 * 12 10 9 44 44 H 1.00901 * 111.00180 * 296.04712 * 18 16 14 45 45 H 1.00904 * 111.00173 * 60.00037 * 18 16 14 46 46 H 1.09001 * 109.46433 * 294.99376 * 19 16 14 47 47 H 1.08999 * 109.47562 * 54.99616 * 19 16 14 48 48 H 1.08992 * 109.47059 * 299.99931 * 20 19 16 49 49 H 1.09008 * 109.47201 * 59.99413 * 20 19 16 50 50 H 1.09001 * 109.47302 * 299.99666 * 21 20 19 51 51 H 1.08999 * 109.47071 * 60.00118 * 21 20 19 52 52 H 0.97001 * 119.99479 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2501 5 6 3.5700 -0.7361 -1.2404 6 6 4.0672 -1.4748 0.0038 7 6 3.5636 -0.7560 1.2579 8 6 2.0384 -0.7190 1.2459 9 6 1.5155 -0.0212 2.5107 10 6 0.6911 -1.0829 3.2052 11 8 0.0955 -0.9416 4.2521 12 7 0.7220 -2.2038 2.4695 13 7 1.4918 -2.0771 1.3134 14 6 1.6957 -3.0475 0.4007 15 8 2.3731 -2.8245 -0.5805 16 6 1.0822 -4.4096 0.5989 17 1 0.0724 -4.2992 0.9944 18 7 1.0295 -5.1150 -0.6885 19 6 1.9314 -5.2126 1.5863 20 6 1.2434 -6.5465 1.8835 21 6 2.0930 -7.3498 2.8703 22 6 1.4156 -8.6638 3.1626 23 1 0.4736 -8.9024 2.6913 24 6 1.9990 -9.5621 4.0309 25 7 3.1463 -9.2718 4.6045 26 14 1.1590 -11.1906 4.3937 27 1 -0.1108 -11.2740 3.6283 28 1 2.0518 -12.3079 3.9939 29 1 0.8686 -11.2848 5.8470 30 1 -0.3633 0.5140 0.8898 31 1 -0.3633 0.5136 -0.8902 32 1 -0.3633 -1.0277 0.0005 33 1 1.6667 -1.7455 -1.2566 34 1 1.6872 -0.2000 -2.1400 35 1 3.9339 -1.2437 -2.1338 36 1 3.9429 0.2881 -1.2276 37 1 3.6897 -2.4972 -0.0055 38 1 5.1571 -1.4898 0.0062 39 1 3.9516 0.2625 1.2734 40 1 3.9071 -1.2889 2.1445 41 1 2.3452 0.2927 3.1440 42 1 0.8924 0.8328 2.2453 43 1 0.2594 -3.0196 2.7175 44 1 0.4221 -4.6379 -1.3377 45 1 1.9540 -5.2300 -1.0760 46 1 2.9138 -5.3992 1.1524 47 1 2.0443 -4.6479 2.5117 48 1 0.2611 -6.3599 2.3172 49 1 1.1306 -7.1113 0.9580 50 1 3.0752 -7.5365 2.4361 51 1 2.2061 -6.7852 3.7958 52 1 3.5569 -9.9039 5.2151 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576692057.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:45 Heat of formation + Delta-G solvation = 16.124843 kcal Electronic energy + Delta-G solvation = -32035.444864 eV Core-core repulsion = 28038.211971 eV Total energy + Delta-G solvation = -3997.232892 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.57914 -39.90733 -38.19857 -36.92032 -35.64036 -33.42856 -33.02798 -32.22046 -31.44771 -31.29385 -28.09058 -27.92120 -26.13354 -25.35020 -23.14141 -22.34956 -21.93138 -21.33726 -20.77380 -20.13751 -19.36821 -18.07839 -17.48426 -16.49731 -16.33410 -16.18983 -15.97513 -15.69899 -15.42722 -14.72955 -14.57746 -14.47626 -14.16953 -14.07810 -14.03631 -13.75161 -13.16537 -13.09294 -12.63185 -12.52583 -12.48271 -12.28439 -12.15669 -11.86393 -11.78025 -11.59247 -11.46439 -11.24229 -11.11367 -10.80254 -10.62864 -10.53829 -10.49216 -10.31936 -10.04636 -9.92263 -9.70551 -9.47660 -9.25470 -9.07495 -8.66603 -8.32609 -8.13574 -5.97892 -3.99678 1.52165 1.85691 2.29531 3.32758 3.35210 3.40361 3.44658 3.76605 3.97693 4.24302 4.30692 4.46202 4.48305 4.60659 4.78013 4.91221 4.95092 4.98818 5.09927 5.15244 5.19815 5.22979 5.32473 5.38289 5.38803 5.40857 5.53142 5.60429 5.70380 5.75511 5.77391 5.83630 5.88477 5.97391 6.10237 6.16988 6.20767 6.31350 6.37878 6.63676 6.67190 6.71619 6.90879 6.95127 7.15930 7.17741 7.34406 7.69450 7.71040 7.84695 7.90704 8.02828 8.45810 9.08027 9.64493 11.13507 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015659 B = 0.003006 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.697061 B = 9311.222359 C =10007.124414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.089 4.089 3 H 0.080 0.920 4 C -0.159 4.159 5 C -0.091 4.091 6 C -0.164 4.164 7 C -0.118 4.118 8 C 0.173 3.827 9 C -0.165 4.165 10 C 0.532 3.468 11 O -0.512 6.512 12 N -0.519 5.519 13 N -0.395 5.395 14 C 0.463 3.537 15 O -0.462 6.462 16 C 0.082 3.918 17 H 0.097 0.903 18 N -0.808 5.808 19 C -0.106 4.106 20 C -0.100 4.100 21 C 0.019 3.981 22 C -0.517 4.517 23 H 0.056 0.944 24 C 0.055 3.945 25 N -0.896 5.896 26 Si 0.890 3.110 27 H -0.272 1.272 28 H -0.284 1.284 29 H -0.285 1.285 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.137 0.863 34 H 0.042 0.958 35 H 0.055 0.945 36 H 0.040 0.960 37 H 0.134 0.866 38 H 0.045 0.955 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.117 0.883 42 H 0.119 0.881 43 H 0.431 0.569 44 H 0.340 0.660 45 H 0.352 0.648 46 H 0.066 0.934 47 H 0.062 0.938 48 H 0.044 0.956 49 H 0.065 0.935 50 H 0.014 0.986 51 H 0.012 0.988 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.130 22.739 -11.640 25.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.108 4.108 3 H 0.099 0.901 4 C -0.195 4.195 5 C -0.128 4.128 6 C -0.199 4.199 7 C -0.157 4.157 8 C 0.090 3.910 9 C -0.205 4.205 10 C 0.317 3.683 11 O -0.385 6.385 12 N -0.272 5.272 13 N -0.222 5.222 14 C 0.255 3.745 15 O -0.339 6.339 16 C -0.034 4.034 17 H 0.115 0.885 18 N -0.337 5.337 19 C -0.144 4.144 20 C -0.137 4.137 21 C -0.018 4.018 22 C -0.555 4.555 23 H 0.074 0.926 24 C -0.146 4.146 25 N -0.536 5.536 26 Si 0.718 3.282 27 H -0.197 1.197 28 H -0.211 1.211 29 H -0.211 1.211 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.152 0.848 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.059 0.941 37 H 0.150 0.850 38 H 0.063 0.937 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.277 0.723 44 H 0.152 0.848 45 H 0.167 0.833 46 H 0.085 0.915 47 H 0.080 0.920 48 H 0.063 0.937 49 H 0.083 0.917 50 H 0.032 0.968 51 H 0.030 0.970 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.209 22.273 -11.151 25.006 hybrid contribution -0.005 -0.078 0.100 0.127 sum -2.214 22.195 -11.052 24.893 Atomic orbital electron populations 1.21874 0.94890 1.02140 1.01723 1.21459 0.95811 0.99390 0.94146 0.90146 1.23126 0.96647 1.05060 0.94675 1.21162 0.95438 0.98290 0.97945 1.22971 0.99197 1.04990 0.92791 1.21931 0.91749 1.01855 1.00158 1.21052 0.94799 0.79960 0.95232 1.22754 1.02024 0.99205 0.96498 1.20177 0.81117 0.83408 0.83615 1.90864 1.45753 1.80776 1.21090 1.45322 1.48883 1.16776 1.16239 1.47818 1.46753 1.12774 1.14828 1.22192 0.83449 0.86593 0.82268 1.90322 1.36186 1.79167 1.28191 1.21799 1.00629 0.86599 0.94350 0.88508 1.58988 1.17635 1.52150 1.04881 1.21711 0.98791 0.97907 0.96024 1.21549 0.98417 0.92904 1.00877 1.19118 0.94972 0.94237 0.93433 1.21296 1.06730 1.01808 1.25690 0.92604 1.25033 0.94980 0.98452 0.96087 1.69977 1.17254 1.36042 1.30340 0.86562 0.79650 0.83958 0.77999 1.19706 1.21068 1.21090 0.92724 0.92227 0.92648 0.84763 0.93953 0.92588 0.94097 0.84992 0.93655 0.90750 0.91343 0.86439 0.86299 0.72290 0.84751 0.83291 0.91524 0.91984 0.93698 0.91661 0.96757 0.96978 0.93138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 8.73 37.16 0.32 -0.80 16 2 C -0.09 -0.69 2.00 -90.80 -0.18 -0.88 16 3 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.16 -1.46 4.80 -26.69 -0.13 -1.59 16 5 C -0.09 -0.87 5.39 -26.73 -0.14 -1.01 16 6 C -0.16 -1.67 5.52 -26.69 -0.15 -1.82 16 7 C -0.12 -1.05 4.72 -26.91 -0.13 -1.17 16 8 C 0.17 1.46 0.66 -131.91 -0.09 1.37 16 9 C -0.16 -1.29 5.69 -27.27 -0.16 -1.45 16 10 C 0.53 5.83 8.64 -10.99 -0.09 5.74 16 11 O -0.51 -7.54 18.03 5.57 0.10 -7.44 16 12 N -0.52 -5.19 6.52 31.26 0.20 -4.99 16 13 N -0.39 -3.73 2.55 -47.69 -0.12 -3.86 16 14 C 0.46 4.76 5.70 -10.99 -0.06 4.70 16 15 O -0.46 -4.95 7.11 5.55 0.04 -4.91 16 16 C 0.08 0.92 2.57 -68.87 -0.18 0.74 16 17 H 0.10 1.01 7.44 -51.92 -0.39 0.63 16 18 N -0.81 -8.82 8.44 -5.66 -0.05 -8.86 16 19 C -0.11 -1.56 4.84 -26.73 -0.13 -1.69 16 20 C -0.10 -1.90 5.04 -26.73 -0.13 -2.04 16 21 C 0.02 0.49 4.97 -27.88 -0.14 0.35 16 22 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16 23 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 24 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 25 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 26 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 27 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 28 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 29 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 30 H 0.05 0.39 6.42 -51.93 -0.33 0.05 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.48 7.55 -51.93 -0.39 0.09 16 33 H 0.14 1.40 3.67 9.31 0.03 1.44 16 34 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.13 1.59 3.71 9.56 0.04 1.62 16 38 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.12 0.79 7.70 -51.93 -0.40 0.39 16 42 H 0.12 0.75 6.30 -51.93 -0.33 0.42 16 43 H 0.43 4.21 7.89 -183.07 -1.44 2.76 16 44 H 0.34 3.07 9.06 -39.29 -0.36 2.72 16 45 H 0.35 3.88 8.58 -39.29 -0.34 3.54 16 46 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 48 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.06 1.28 7.75 -51.92 -0.40 0.88 16 50 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 51 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 52 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 388.59 15.07 5.86 5.86 Total: -1.00 -31.67 388.59 -9.39 -41.07 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -9.35 Total: 5.59 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: -1.79 Total: -12.90 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: 0.77 Total: -43.96 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.14 Total: -12.35 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.67 -9.39 -41.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576692057.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.190 kcal (2) G-P(sol) polarization free energy of solvation -31.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds