Wall clock time and date at job start Tue Mar 31 2020 20:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46510 * 2 1 4 4 C 1.53077 * 109.45988 * 240.01264 * 2 1 3 5 5 C 1.53005 * 109.41968 * 180.69650 * 4 2 1 6 6 C 1.53005 * 109.55689 * 60.35426 * 5 4 2 7 7 C 1.53076 * 109.42656 * 299.65284 * 6 5 4 8 8 C 1.52567 * 109.50376 * 59.28691 * 7 6 5 9 9 C 1.53622 * 110.17178 * 179.05022 * 8 7 6 10 10 C 1.51300 * 104.15843 * 241.11144 * 9 8 7 11 11 O 1.21271 * 125.60072 * 180.02562 * 10 9 8 12 12 N 1.34115 * 108.79248 * 359.72578 * 10 9 8 13 13 N 1.39465 * 113.04723 * 0.47025 * 12 10 9 14 14 C 1.34775 * 125.41460 * 179.78467 * 13 12 10 15 15 O 1.21290 * 119.99543 * 179.14100 * 14 13 12 16 16 C 1.50702 * 120.00646 * 359.14709 * 14 13 12 17 17 H 1.09007 * 109.46746 * 39.99139 * 16 14 13 18 18 N 1.46893 * 109.47310 * 159.99502 * 16 14 13 19 19 C 1.53000 * 109.46780 * 280.00275 * 16 14 13 20 20 C 1.53000 * 109.46961 * 174.99747 * 19 16 14 21 21 C 1.52998 * 109.47044 * 179.97438 * 20 19 16 22 22 C 1.50699 * 109.46924 * 180.02562 * 21 20 19 23 23 H 1.08000 * 120.00527 * 0.02562 * 22 21 20 24 24 C 1.37886 * 119.99925 * 179.97438 * 22 21 20 25 25 N 1.31516 * 119.99787 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 119.99992 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47100 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.47009 * 120.00282 * 26 24 22 29 29 H 1.48497 * 109.47140 * 240.00296 * 26 24 22 30 30 H 1.08991 * 109.47356 * 300.01409 * 1 2 3 31 31 H 1.09002 * 109.47061 * 60.01766 * 1 2 3 32 32 H 1.09004 * 109.47082 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.48461 * 300.68190 * 4 2 1 34 34 H 1.09002 * 109.47798 * 60.71761 * 4 2 1 35 35 H 1.09003 * 109.45756 * 180.37714 * 5 4 2 36 36 H 1.09000 * 109.46173 * 300.34459 * 5 4 2 37 37 H 1.08993 * 109.47599 * 59.64147 * 6 5 4 38 38 H 1.08997 * 109.47639 * 179.65253 * 6 5 4 39 39 H 1.09006 * 109.46642 * 299.27313 * 7 6 5 40 40 H 1.08997 * 109.46160 * 179.29882 * 7 6 5 41 41 H 1.09000 * 110.49184 * 359.77620 * 9 8 7 42 42 H 1.08993 * 110.49428 * 122.44205 * 9 8 7 43 43 H 0.97006 * 123.47570 * 180.25824 * 12 10 9 44 44 H 1.00901 * 111.00180 * 296.04712 * 18 16 14 45 45 H 1.00904 * 111.00173 * 60.00037 * 18 16 14 46 46 H 1.09001 * 109.46433 * 294.99376 * 19 16 14 47 47 H 1.08999 * 109.47562 * 54.99616 * 19 16 14 48 48 H 1.08992 * 109.47059 * 299.99931 * 20 19 16 49 49 H 1.09008 * 109.47201 * 59.99413 * 20 19 16 50 50 H 1.09001 * 109.47302 * 299.99666 * 21 20 19 51 51 H 1.08999 * 109.47071 * 60.00118 * 21 20 19 52 52 H 0.97001 * 119.99479 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2501 5 6 3.5700 -0.7361 -1.2404 6 6 4.0672 -1.4748 0.0038 7 6 3.5636 -0.7560 1.2579 8 6 2.0384 -0.7190 1.2459 9 6 1.5155 -0.0212 2.5107 10 6 0.6911 -1.0829 3.2052 11 8 0.0955 -0.9416 4.2521 12 7 0.7220 -2.2038 2.4695 13 7 1.4918 -2.0771 1.3134 14 6 1.6957 -3.0475 0.4007 15 8 2.3731 -2.8245 -0.5805 16 6 1.0822 -4.4096 0.5989 17 1 0.0724 -4.2992 0.9944 18 7 1.0295 -5.1150 -0.6885 19 6 1.9314 -5.2126 1.5863 20 6 1.2434 -6.5465 1.8835 21 6 2.0930 -7.3498 2.8703 22 6 1.4156 -8.6638 3.1626 23 1 0.4736 -8.9024 2.6913 24 6 1.9990 -9.5621 4.0309 25 7 3.1463 -9.2718 4.6045 26 14 1.1590 -11.1906 4.3937 27 1 -0.1108 -11.2740 3.6283 28 1 2.0518 -12.3079 3.9939 29 1 0.8686 -11.2848 5.8470 30 1 -0.3633 0.5140 0.8898 31 1 -0.3633 0.5136 -0.8902 32 1 -0.3633 -1.0277 0.0005 33 1 1.6667 -1.7455 -1.2566 34 1 1.6872 -0.2000 -2.1400 35 1 3.9339 -1.2437 -2.1338 36 1 3.9429 0.2881 -1.2276 37 1 3.6897 -2.4972 -0.0055 38 1 5.1571 -1.4898 0.0062 39 1 3.9516 0.2625 1.2734 40 1 3.9071 -1.2889 2.1445 41 1 2.3452 0.2927 3.1440 42 1 0.8924 0.8328 2.2453 43 1 0.2594 -3.0196 2.7175 44 1 0.4221 -4.6379 -1.3377 45 1 1.9540 -5.2300 -1.0760 46 1 2.9138 -5.3992 1.1524 47 1 2.0443 -4.6479 2.5117 48 1 0.2611 -6.3599 2.3172 49 1 1.1306 -7.1113 0.9580 50 1 3.0752 -7.5365 2.4361 51 1 2.2061 -6.7852 3.7958 52 1 3.5569 -9.9039 5.2151 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001576692057.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:40 Heat of formation + Delta-G solvation = -5.242964 kcal Electronic energy + Delta-G solvation = -32036.371441 eV Core-core repulsion = 28038.211971 eV Total energy + Delta-G solvation = -3998.159470 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.35857 -40.77260 -39.05368 -37.84852 -36.81882 -35.21940 -33.75148 -33.12804 -32.92672 -32.13166 -29.59003 -28.62075 -27.13644 -26.51319 -24.61620 -23.16138 -22.73084 -22.18473 -21.88022 -21.53561 -20.14603 -18.92547 -18.54392 -18.16244 -17.34754 -17.12382 -17.01861 -16.53718 -16.46973 -16.21225 -15.74545 -15.39805 -15.24041 -14.78402 -14.74115 -14.69185 -14.46977 -14.25974 -13.85605 -13.65463 -13.31964 -13.21641 -13.17824 -12.97846 -12.88238 -12.80552 -12.53730 -12.39334 -12.27283 -12.23181 -12.16385 -11.87949 -11.44817 -11.42250 -11.28609 -11.13142 -11.02399 -10.82160 -10.66934 -10.53548 -10.26367 -9.59197 -8.92780 -8.18038 -6.28177 0.71446 1.00852 1.40598 1.41018 1.46507 1.54333 2.42354 2.54185 3.04124 3.15465 3.28046 3.45175 3.59022 3.69756 3.83186 3.92435 4.08044 4.12729 4.24207 4.35061 4.39749 4.46906 4.52143 4.55731 4.62332 4.66692 4.71558 4.73640 4.84276 4.90118 4.94382 5.02272 5.07396 5.10428 5.14992 5.22774 5.25464 5.32799 5.38569 5.44148 5.46392 5.59950 5.60717 5.82995 5.84185 5.87334 5.93020 6.06518 6.29650 6.33819 6.51355 6.87234 6.90093 7.07303 7.41106 8.93823 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015659 B = 0.003006 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.697061 B = 9311.222359 C =10007.124414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 H 0.099 0.901 4 C -0.157 4.157 5 C -0.088 4.088 6 C -0.165 4.165 7 C -0.117 4.117 8 C 0.172 3.828 9 C -0.155 4.155 10 C 0.529 3.471 11 O -0.555 6.555 12 N -0.518 5.518 13 N -0.392 5.392 14 C 0.465 3.535 15 O -0.461 6.461 16 C 0.092 3.908 17 H 0.109 0.891 18 N -0.814 5.814 19 C -0.095 4.095 20 C -0.084 4.084 21 C 0.022 3.978 22 C -0.538 4.538 23 H 0.060 0.940 24 C -0.003 4.003 25 N -0.935 5.935 26 Si 0.962 3.038 27 H -0.261 1.261 28 H -0.279 1.279 29 H -0.279 1.279 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.041 0.959 33 H 0.124 0.876 34 H 0.045 0.955 35 H 0.044 0.956 36 H 0.052 0.948 37 H 0.116 0.884 38 H 0.039 0.961 39 H 0.096 0.904 40 H 0.058 0.942 41 H 0.133 0.867 42 H 0.141 0.859 43 H 0.430 0.570 44 H 0.353 0.647 45 H 0.351 0.649 46 H 0.055 0.945 47 H 0.061 0.939 48 H 0.051 0.949 49 H 0.061 0.939 50 H -0.014 1.014 51 H -0.012 1.012 52 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.127 24.107 -12.508 27.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.103 4.103 3 H 0.118 0.882 4 C -0.193 4.193 5 C -0.125 4.125 6 C -0.201 4.201 7 C -0.155 4.155 8 C 0.089 3.911 9 C -0.195 4.195 10 C 0.316 3.684 11 O -0.431 6.431 12 N -0.269 5.269 13 N -0.219 5.219 14 C 0.257 3.743 15 O -0.338 6.338 16 C -0.024 4.024 17 H 0.126 0.874 18 N -0.344 5.344 19 C -0.133 4.133 20 C -0.121 4.121 21 C -0.015 4.015 22 C -0.576 4.576 23 H 0.078 0.922 24 C -0.200 4.200 25 N -0.576 5.576 26 Si 0.787 3.213 27 H -0.185 1.185 28 H -0.205 1.205 29 H -0.205 1.205 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.061 0.939 33 H 0.140 0.860 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.132 0.868 38 H 0.058 0.942 39 H 0.114 0.886 40 H 0.077 0.923 41 H 0.151 0.849 42 H 0.159 0.841 43 H 0.276 0.724 44 H 0.167 0.833 45 H 0.166 0.834 46 H 0.074 0.926 47 H 0.080 0.920 48 H 0.070 0.930 49 H 0.080 0.920 50 H 0.005 0.995 51 H 0.006 0.994 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.209 23.649 -12.060 26.740 hybrid contribution 0.367 -0.518 0.326 0.714 sum -2.843 23.131 -11.734 26.092 Atomic orbital electron populations 1.21849 0.94532 1.01520 1.02459 1.21449 0.96001 0.99993 0.92846 0.88250 1.23038 0.96187 1.04517 0.95581 1.21129 0.95821 0.98592 0.96987 1.22912 0.98845 1.04321 0.94016 1.21934 0.91986 1.02769 0.98853 1.21193 0.94548 0.79291 0.96049 1.22822 1.02247 0.98667 0.95769 1.20627 0.80699 0.84076 0.83043 1.90842 1.47698 1.81571 1.22971 1.45372 1.48477 1.16756 1.16298 1.47787 1.46564 1.13228 1.14283 1.21793 0.83579 0.86431 0.82541 1.90376 1.35902 1.79188 1.28306 1.21538 1.00419 0.86717 0.93701 0.87361 1.58964 1.17920 1.52514 1.05049 1.21459 0.98450 0.96248 0.97146 1.21281 0.97848 0.94199 0.98819 1.19048 0.94577 0.94192 0.93710 1.21762 1.07034 1.03068 1.25706 0.92184 1.25977 0.95620 1.02495 0.95904 1.70108 1.18828 1.37556 1.31076 0.85441 0.78878 0.79025 0.77978 1.18469 1.20510 1.20527 0.92016 0.91490 0.93949 0.86012 0.93625 0.93760 0.92973 0.86776 0.94249 0.88572 0.92326 0.84859 0.84093 0.72427 0.83312 0.83399 0.92583 0.92020 0.92993 0.92039 0.99518 0.99383 0.92940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 8.73 71.98 0.63 -1.19 16 2 C -0.08 -1.07 2.00 -10.91 -0.02 -1.09 16 3 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 4 C -0.16 -2.55 4.80 30.62 0.15 -2.40 16 5 C -0.09 -1.53 5.39 30.60 0.17 -1.37 16 6 C -0.16 -3.19 5.52 30.62 0.17 -3.02 16 7 C -0.12 -1.83 4.72 30.48 0.14 -1.69 16 8 C 0.17 2.51 0.66 3.52 0.00 2.51 16 9 C -0.16 -2.04 5.69 30.25 0.17 -1.87 16 10 C 0.53 11.01 8.64 87.95 0.76 11.77 16 11 O -0.55 -16.14 18.03 -3.00 -0.05 -16.20 16 12 N -0.52 -9.90 6.52 -173.79 -1.13 -11.03 16 13 N -0.39 -6.91 2.55 -423.17 -1.08 -7.99 16 14 C 0.47 9.14 5.70 87.66 0.50 9.64 16 15 O -0.46 -9.50 7.11 -3.06 -0.02 -9.52 16 16 C 0.09 2.00 2.57 44.17 0.11 2.11 16 17 H 0.11 2.12 7.44 -2.38 -0.02 2.10 16 18 N -0.81 -17.09 8.44 -171.80 -1.45 -18.54 16 19 C -0.09 -2.81 4.84 30.59 0.15 -2.66 16 20 C -0.08 -3.23 5.04 30.59 0.15 -3.08 16 21 C 0.02 1.14 4.97 29.85 0.15 1.28 16 22 C -0.54 -30.67 9.11 25.60 0.23 -30.43 16 23 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 24 C 0.00 -0.16 5.46 84.66 0.46 0.31 16 25 N -0.93 -57.48 13.29 21.45 0.28 -57.19 16 26 Si 0.96 44.68 29.54 68.60 2.03 46.71 16 27 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 28 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 29 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 30 H 0.06 0.69 6.42 -2.39 -0.02 0.67 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.04 0.64 7.55 -2.38 -0.02 0.62 16 33 H 0.12 2.36 3.67 -3.69 -0.01 2.34 16 34 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.05 0.79 8.14 -2.39 -0.02 0.78 16 37 H 0.12 2.69 3.71 0.24 0.00 2.69 16 38 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 40 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.13 1.39 7.70 -2.39 -0.02 1.37 16 42 H 0.14 1.27 6.30 -2.39 -0.02 1.26 16 43 H 0.43 8.20 7.89 -213.72 -1.69 6.51 16 44 H 0.35 5.91 9.06 -89.69 -0.81 5.10 16 45 H 0.35 7.58 8.58 -89.69 -0.77 6.81 16 46 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 47 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 48 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 49 H 0.06 2.42 7.75 -2.38 -0.02 2.40 16 50 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 51 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 52 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -69.51 388.59 0.19 -69.32 By element: Atomic # 1 Polarization: 27.92 SS G_CDS: -2.31 Total: 25.61 kcal Atomic # 6 Polarization: -25.09 SS G_CDS: 3.92 Total: -21.16 kcal Atomic # 7 Polarization: -91.38 SS G_CDS: -3.38 Total: -94.76 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: -0.08 Total: -25.72 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -69.51 0.19 -69.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576692057.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.076 kcal (2) G-P(sol) polarization free energy of solvation -69.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds