Wall clock time and date at job start Tue Mar 31 2020 20:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46760 * 2 1 4 4 C 1.53086 * 109.46065 * 240.01990 * 2 1 3 5 5 C 1.53000 * 109.42138 * 299.28772 * 4 2 1 6 6 C 1.52997 * 109.56440 * 299.65155 * 5 4 2 7 7 C 1.53077 * 109.42768 * 60.34284 * 6 5 4 8 8 C 1.52563 * 109.46750 * 119.99580 * 2 1 3 9 9 C 1.53625 * 110.27720 * 299.09595 * 8 2 1 10 10 C 1.51304 * 104.16055 * 241.41612 * 9 8 2 11 11 O 1.21281 * 125.60177 * 179.75599 * 10 9 8 12 12 N 1.34115 * 108.79515 * 359.77464 * 10 9 8 13 13 N 1.39462 * 113.04892 * 359.97438 * 12 10 9 14 14 C 1.34777 * 125.42279 * 179.97438 * 13 12 10 15 15 O 1.21278 * 120.00211 * 179.66451 * 14 13 12 16 16 C 1.50702 * 119.99872 * 359.66875 * 14 13 12 17 17 H 1.09005 * 109.47009 * 39.99649 * 16 14 13 18 18 N 1.46895 * 109.46904 * 159.99645 * 16 14 13 19 19 C 1.53001 * 109.46739 * 280.00046 * 16 14 13 20 20 C 1.52997 * 109.46700 * 175.00046 * 19 16 14 21 21 C 1.53000 * 109.47057 * 179.97438 * 20 19 16 22 22 C 1.50702 * 109.47172 * 180.02562 * 21 20 19 23 23 H 1.08000 * 120.00061 * 359.97438 * 22 21 20 24 24 C 1.37881 * 119.99833 * 179.97438 * 22 21 20 25 25 N 1.31510 * 120.00024 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99803 * 179.97438 * 24 22 21 27 27 H 1.48507 * 109.46923 * 269.99804 * 26 24 22 28 28 H 1.48498 * 109.47064 * 150.00112 * 26 24 22 29 29 H 1.48499 * 109.47169 * 29.99723 * 26 24 22 30 30 H 1.08995 * 109.46843 * 300.00431 * 1 2 3 31 31 H 1.08999 * 109.47378 * 60.00852 * 1 2 3 32 32 H 1.09004 * 109.46837 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.48157 * 59.27694 * 4 2 1 34 34 H 1.09004 * 109.47637 * 179.30609 * 4 2 1 35 35 H 1.09002 * 109.45737 * 59.68429 * 5 4 2 36 36 H 1.09001 * 109.45366 * 179.62441 * 5 4 2 37 37 H 1.09002 * 109.48141 * 180.33349 * 6 5 4 38 38 H 1.08997 * 109.47791 * 300.35251 * 6 5 4 39 39 H 1.09000 * 109.46770 * 180.70959 * 7 6 5 40 40 H 1.09005 * 109.46540 * 60.72704 * 7 6 5 41 41 H 1.09005 * 110.68251 * 122.65385 * 9 8 2 42 42 H 1.08994 * 110.41370 * 0.04952 * 9 8 2 43 43 H 0.97003 * 123.47792 * 179.97438 * 12 10 9 44 44 H 1.00893 * 111.00621 * 296.04549 * 18 16 14 45 45 H 1.00899 * 110.99776 * 60.00487 * 18 16 14 46 46 H 1.08990 * 109.47177 * 55.00063 * 19 16 14 47 47 H 1.08999 * 109.46820 * 294.99296 * 19 16 14 48 48 H 1.08997 * 109.47633 * 59.99951 * 20 19 16 49 49 H 1.09002 * 109.47298 * 299.99509 * 20 19 16 50 50 H 1.08998 * 109.47369 * 59.99568 * 21 20 19 51 51 H 1.09006 * 109.47220 * 299.99860 * 21 20 19 52 52 H 0.96998 * 119.99997 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2503 5 6 1.5440 -2.1686 -1.2406 6 6 2.0747 -2.8838 0.0034 7 6 1.5650 -2.1694 1.2577 8 6 2.0385 -0.7191 1.2458 9 6 1.5552 0.0037 2.5123 10 6 2.8311 0.4333 3.2029 11 8 2.8966 1.0452 4.2479 12 7 3.8775 0.0264 2.4694 13 7 3.5013 -0.6570 1.3134 14 6 4.3479 -1.1724 0.4001 15 8 3.9121 -1.7556 -0.5698 16 6 5.8363 -1.0242 0.5843 17 1 6.0881 -1.1651 1.6355 18 7 6.5327 -2.0328 -0.2255 19 6 6.2684 0.3744 0.1394 20 6 7.7555 0.5690 0.4418 21 6 8.1879 1.9674 -0.0037 22 6 9.6528 2.1588 0.2936 23 1 10.2188 1.3628 0.7546 24 6 10.2705 3.3501 -0.0229 25 7 9.5815 4.3192 -0.5847 26 14 12.0863 3.5877 0.3462 27 1 12.2441 4.1545 1.7097 28 1 12.6759 4.5194 -0.6485 29 1 12.7822 2.2780 0.2710 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6661 -0.2148 -2.1401 34 1 3.1300 -0.7106 -1.2568 35 1 0.4541 -2.1788 -1.2281 36 1 1.9013 -2.6808 -2.1340 37 1 1.7254 -3.9163 0.0059 38 1 3.1645 -2.8688 -0.0059 39 1 1.9529 -2.6709 2.1443 40 1 0.4753 -2.1956 1.2732 41 1 0.9862 -0.6739 3.1489 42 1 0.9533 0.8730 2.2476 43 1 4.8009 0.1906 2.7173 44 1 6.3136 -2.9653 0.0913 45 1 6.3154 -1.9231 -1.2047 46 1 5.6872 1.1227 0.6780 47 1 6.0981 0.4837 -0.9317 48 1 8.3368 -0.1794 -0.0968 49 1 7.9259 0.4596 1.5128 50 1 7.6066 2.7161 0.5345 51 1 8.0176 2.0764 -1.0748 52 1 8.6386 4.1960 -0.7760 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576692063.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:59 Heat of formation + Delta-G solvation = 13.539262 kcal Electronic energy + Delta-G solvation = -31946.048846 eV Core-core repulsion = 27948.703835 eV Total energy + Delta-G solvation = -3997.345012 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.59946 -39.95392 -38.46797 -37.02290 -35.87913 -33.72313 -32.63484 -32.09402 -31.44091 -31.33514 -28.32766 -27.91123 -26.20662 -24.92400 -23.05608 -22.61417 -22.05080 -21.58669 -20.85196 -20.38370 -19.12346 -17.96829 -17.41227 -16.70478 -16.50313 -16.32859 -16.06923 -15.94183 -15.68003 -14.87350 -14.85162 -14.27520 -14.13548 -13.88823 -13.70686 -13.35733 -13.30487 -13.13229 -12.98955 -12.83195 -12.64526 -12.35481 -12.24995 -12.13520 -11.78024 -11.53751 -11.39860 -11.19176 -11.14351 -10.76431 -10.69658 -10.56457 -10.34698 -10.12249 -10.10571 -9.99064 -9.83795 -9.67256 -9.41360 -8.81204 -8.46623 -8.28943 -8.19498 -6.32711 -4.01359 1.46109 1.80032 2.24328 3.29518 3.45810 3.49566 3.65275 3.72447 3.94613 4.17723 4.25680 4.44524 4.55598 4.58120 4.81926 4.86187 4.87519 4.94104 5.02337 5.07541 5.10362 5.26930 5.27673 5.32891 5.39803 5.44536 5.46587 5.55742 5.66041 5.67180 5.70519 5.78562 5.85983 5.89290 6.07364 6.15426 6.19528 6.21632 6.33258 6.57710 6.58781 6.62195 6.75324 6.87666 7.00305 7.11611 7.28082 7.45861 7.57874 7.63788 7.85208 8.26406 8.51077 8.92596 9.70898 11.07935 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015403 B = 0.002974 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.435261 B = 9411.936222 C =10073.978248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.090 4.090 3 H 0.073 0.927 4 C -0.157 4.157 5 C -0.092 4.092 6 C -0.165 4.165 7 C -0.117 4.117 8 C 0.174 3.826 9 C -0.163 4.163 10 C 0.530 3.470 11 O -0.511 6.511 12 N -0.521 5.521 13 N -0.398 5.398 14 C 0.462 3.538 15 O -0.460 6.460 16 C 0.083 3.917 17 H 0.098 0.902 18 N -0.808 5.808 19 C -0.107 4.107 20 C -0.093 4.093 21 C 0.006 3.994 22 C -0.599 4.599 23 H 0.049 0.951 24 C 0.013 3.987 25 N -0.915 5.915 26 Si 1.070 2.930 27 H -0.288 1.288 28 H -0.285 1.285 29 H -0.288 1.288 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.045 0.955 34 H 0.132 0.868 35 H 0.045 0.955 36 H 0.054 0.946 37 H 0.042 0.958 38 H 0.135 0.865 39 H 0.063 0.937 40 H 0.077 0.923 41 H 0.118 0.882 42 H 0.120 0.880 43 H 0.431 0.569 44 H 0.341 0.659 45 H 0.352 0.648 46 H 0.061 0.939 47 H 0.066 0.934 48 H 0.067 0.933 49 H 0.046 0.954 50 H 0.003 0.997 51 H 0.005 0.995 52 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.986 -15.293 2.456 26.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.110 4.110 3 H 0.091 0.909 4 C -0.193 4.193 5 C -0.129 4.129 6 C -0.201 4.201 7 C -0.155 4.155 8 C 0.090 3.910 9 C -0.204 4.204 10 C 0.315 3.685 11 O -0.384 6.384 12 N -0.274 5.274 13 N -0.225 5.225 14 C 0.254 3.746 15 O -0.337 6.337 16 C -0.033 4.033 17 H 0.116 0.884 18 N -0.337 5.337 19 C -0.145 4.145 20 C -0.130 4.130 21 C -0.030 4.030 22 C -0.637 4.637 23 H 0.067 0.933 24 C -0.191 4.191 25 N -0.552 5.552 26 Si 0.899 3.101 27 H -0.215 1.215 28 H -0.211 1.211 29 H -0.215 1.215 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.148 0.852 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.151 0.849 39 H 0.082 0.918 40 H 0.096 0.904 41 H 0.136 0.864 42 H 0.138 0.862 43 H 0.277 0.723 44 H 0.154 0.846 45 H 0.167 0.833 46 H 0.079 0.921 47 H 0.084 0.916 48 H 0.085 0.915 49 H 0.065 0.935 50 H 0.021 0.979 51 H 0.023 0.977 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.292 -13.919 2.574 23.928 hybrid contribution -2.169 -1.270 0.021 2.513 sum -21.460 -15.189 2.595 26.419 Atomic orbital electron populations 1.21996 0.94286 1.02492 1.02012 1.21458 0.96286 0.99272 0.93988 0.90881 1.22999 1.06580 0.94767 0.94937 1.21186 0.98285 0.95711 0.97714 1.23058 1.07084 0.96947 0.93007 1.21935 1.01260 0.92548 0.99792 1.21030 0.77503 0.97116 0.95349 1.22759 0.97620 1.03563 0.96414 1.20238 0.86075 0.78437 0.83703 1.90869 1.85605 1.40472 1.21439 1.45334 1.10456 1.55553 1.16014 1.47882 1.05958 1.53544 1.15098 1.22171 0.90057 0.80112 0.82241 1.90327 1.76011 1.39133 1.28234 1.21775 0.84597 0.96632 1.00335 0.88436 1.58981 1.60649 1.05939 1.08114 1.21720 1.00144 0.90965 1.01714 1.21414 0.91140 1.00211 1.00268 1.19247 0.96907 0.91361 0.95533 1.22086 0.94977 1.02481 1.44200 0.93265 1.25847 1.06319 0.92632 0.94252 1.70754 1.10430 1.34086 1.39924 0.83527 0.74547 0.75524 0.76510 1.21514 1.21055 1.21450 0.92549 0.92051 0.91700 0.93613 0.85183 0.93653 0.92702 0.93934 0.84912 0.91796 0.90438 0.86417 0.86204 0.72315 0.84629 0.83295 0.92057 0.91565 0.91463 0.93514 0.97911 0.97669 0.92175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 8.30 37.16 0.31 -0.73 16 2 C -0.09 -0.80 2.28 -90.80 -0.21 -1.00 16 3 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 4 C -0.16 -1.59 5.04 -26.69 -0.13 -1.73 16 5 C -0.09 -0.86 5.13 -26.73 -0.14 -1.00 16 6 C -0.17 -1.51 5.51 -26.69 -0.15 -1.66 16 7 C -0.12 -0.92 4.41 -26.91 -0.12 -1.03 16 8 C 0.17 1.47 0.67 -131.90 -0.09 1.38 16 9 C -0.16 -1.28 5.69 -27.26 -0.16 -1.44 16 10 C 0.53 5.88 8.64 -10.98 -0.09 5.79 16 11 O -0.51 -7.57 18.03 5.56 0.10 -7.47 16 12 N -0.52 -5.31 6.52 31.26 0.20 -5.11 16 13 N -0.40 -3.85 3.41 -47.68 -0.16 -4.01 16 14 C 0.46 4.82 5.70 -10.98 -0.06 4.75 16 15 O -0.46 -4.96 7.11 5.56 0.04 -4.92 16 16 C 0.08 0.94 2.56 -68.87 -0.18 0.76 16 17 H 0.10 1.04 7.46 -51.93 -0.39 0.65 16 18 N -0.81 -8.92 8.44 -5.65 -0.05 -8.96 16 19 C -0.11 -1.58 4.84 -26.73 -0.13 -1.71 16 20 C -0.09 -1.79 5.04 -26.73 -0.13 -1.93 16 21 C 0.01 0.16 4.28 -27.88 -0.12 0.04 16 22 C -0.60 -17.13 9.11 -34.44 -0.31 -17.45 16 23 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 24 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 25 N -0.92 -28.35 13.65 55.43 0.76 -27.59 16 26 Si 1.07 25.62 29.90 -169.99 -5.08 20.53 16 27 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 28 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 29 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 30 H 0.06 0.32 6.54 -51.93 -0.34 -0.02 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.43 4.92 -51.93 -0.26 0.17 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.13 1.56 3.71 9.57 0.04 1.60 16 35 H 0.04 0.39 6.42 -51.93 -0.33 0.06 16 36 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.14 1.40 3.66 9.27 0.03 1.43 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.51 6.60 -51.93 -0.34 0.17 16 41 H 0.12 0.72 7.71 -51.93 -0.40 0.32 16 42 H 0.12 0.82 6.44 -51.93 -0.33 0.49 16 43 H 0.43 4.29 7.90 -183.07 -1.45 2.84 16 44 H 0.34 3.11 9.06 -39.30 -0.36 2.75 16 45 H 0.35 3.91 8.58 -39.29 -0.34 3.57 16 46 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 47 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 48 H 0.07 1.35 7.75 -51.93 -0.40 0.95 16 49 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 50 H 0.00 0.07 8.01 -51.93 -0.42 -0.35 16 51 H 0.01 0.13 8.01 -51.93 -0.42 -0.28 16 52 H 0.27 8.25 7.22 -40.82 -0.29 7.96 16 LS Contribution 382.08 15.07 5.76 5.76 Total: -1.00 -32.60 382.08 -9.24 -41.84 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -9.00 Total: 6.60 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: -1.81 Total: -16.68 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: 0.75 Total: -45.68 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: 0.14 Total: -12.38 kcal Atomic # 14 Polarization: 25.62 SS G_CDS: -5.08 Total: 20.53 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.60 -9.24 -41.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576692063.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.382 kcal (2) G-P(sol) polarization free energy of solvation -32.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds