Wall clock time and date at job start Tue Mar 31 2020 21:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.49919 * 2 1 4 4 C 1.53043 * 109.49222 * 120.06319 * 2 1 3 5 5 C 1.53045 * 109.53587 * 181.34843 * 4 2 1 6 6 C 1.53193 * 109.31211 * 298.63587 * 5 4 2 7 7 N 1.46920 * 108.77665 * 54.63331 * 6 5 4 8 8 C 1.34777 * 120.62997 * 126.36740 * 7 6 5 9 9 O 1.21291 * 120.00033 * 179.97438 * 8 7 6 10 10 C 1.50694 * 120.00394 * 0.02562 * 8 7 6 11 11 C 1.52991 * 109.47654 * 179.97438 * 10 8 7 12 12 N 1.46502 * 109.47578 * 179.97438 * 11 10 8 13 13 C 1.34776 * 120.00236 * 179.97438 * 12 11 10 14 14 O 1.21583 * 119.99804 * 0.02562 * 13 12 11 15 15 N 1.34776 * 120.00044 * 180.27800 * 13 12 11 16 16 C 1.46495 * 120.00048 * 179.72860 * 15 13 12 17 17 C 1.53002 * 109.47231 * 181.16714 * 16 15 13 18 18 C 1.50706 * 115.54855 * 39.67997 * 17 16 15 19 19 H 1.08003 * 119.99853 * 264.53359 * 18 17 16 20 20 C 1.37877 * 119.99818 * 84.52858 * 18 17 16 21 21 N 1.31509 * 120.00249 * 352.93359 * 20 18 17 22 22 Si 1.86798 * 119.99843 * 172.92685 * 20 18 17 23 23 H 1.48499 * 109.47240 * 90.00148 * 22 20 18 24 24 H 1.48498 * 109.47142 * 210.00288 * 22 20 18 25 25 H 1.48504 * 109.47363 * 330.00345 * 22 20 18 26 26 C 1.52996 * 117.50012 * 253.97546 * 17 16 15 27 27 C 1.52998 * 60.00120 * 252.50634 * 26 17 16 28 28 C 1.46924 * 118.73874 * 306.64274 * 7 6 5 29 29 H 1.08998 * 109.47231 * 299.93741 * 1 2 3 30 30 H 1.09002 * 109.46746 * 59.93941 * 1 2 3 31 31 H 1.09007 * 109.46747 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46655 * 61.32869 * 4 2 1 33 33 H 1.09001 * 109.46295 * 301.36345 * 4 2 1 34 34 H 1.08997 * 109.49688 * 178.67903 * 5 4 2 35 35 H 1.09002 * 109.49479 * 58.58231 * 5 4 2 36 36 H 1.08994 * 109.58564 * 294.84422 * 6 5 4 37 37 H 1.09000 * 109.70307 * 174.49109 * 6 5 4 38 38 H 1.08997 * 109.47461 * 59.99486 * 10 8 7 39 39 H 1.09006 * 109.46861 * 299.99708 * 10 8 7 40 40 H 1.09002 * 109.47314 * 59.99964 * 11 10 8 41 41 H 1.08997 * 109.47162 * 300.00066 * 11 10 8 42 42 H 0.97001 * 119.99508 * 0.02562 * 12 11 10 43 43 H 0.97002 * 119.99770 * 359.72499 * 15 13 12 44 44 H 1.09001 * 109.47336 * 301.16539 * 16 15 13 45 45 H 1.09003 * 109.47576 * 61.16803 * 16 15 13 46 46 H 0.96999 * 120.00223 * 185.03219 * 21 20 18 47 47 H 1.09001 * 117.50264 * 359.97438 * 26 17 16 48 48 H 1.08997 * 117.50349 * 145.01812 * 26 17 16 49 49 H 1.09001 * 117.50625 * 252.51199 * 27 26 17 50 50 H 1.08999 * 117.52139 * 107.47304 * 27 26 17 51 51 H 1.09000 * 109.58779 * 173.14604 * 28 7 6 52 52 H 1.09001 * 109.58719 * 293.56954 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0407 -0.7227 1.2486 5 6 3.5708 -0.6940 1.2668 6 6 4.1059 -1.4256 0.0318 7 7 3.5054 -0.8285 -1.1688 8 6 4.2820 -0.3847 -2.1769 9 8 3.7741 0.1059 -3.1630 10 6 5.7815 -0.4991 -2.0795 11 6 6.4201 0.0732 -3.3465 12 7 7.8778 -0.0374 -3.2515 13 6 8.6544 0.4055 -4.2601 14 8 8.1452 0.8974 -5.2485 15 7 9.9953 0.2986 -4.1751 16 6 10.8391 0.7747 -5.2739 17 6 12.3087 0.5112 -4.9394 18 6 12.5955 -0.8045 -4.2627 19 1 12.6678 -0.8536 -3.1862 20 6 12.7653 -1.9455 -5.0178 21 7 12.5409 -1.9162 -6.3133 22 14 13.3144 -3.5331 -4.2007 23 1 12.1223 -4.3012 -3.7603 24 1 14.0955 -4.3438 -5.1692 25 1 14.1620 -3.2164 -3.0232 26 6 13.1693 1.7124 -4.5429 27 6 13.3618 1.0511 -5.9091 28 6 2.0423 -0.7187 -1.2468 29 1 -0.3633 0.5128 0.8905 30 1 -0.3633 0.5148 -0.8895 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6971 -1.7571 1.2357 33 1 1.6577 -0.2242 2.1390 34 1 3.9333 -1.1883 2.1680 35 1 3.9154 0.3400 1.2547 36 1 3.8387 -2.4808 0.0878 37 1 5.1904 -1.3253 -0.0136 38 1 6.0599 -1.5477 -1.9746 39 1 6.1328 0.0587 -1.2114 40 1 6.1418 1.1219 -3.4519 41 1 6.0688 -0.4848 -4.2144 42 1 8.2840 -0.4301 -2.4631 43 1 10.4015 -0.0935 -3.3863 44 1 10.5748 0.2467 -6.1901 45 1 10.6845 1.8446 -5.4136 46 1 12.5893 -2.7341 -6.8325 47 1 12.6888 2.6905 -4.5208 48 1 13.9431 1.5513 -3.7924 49 1 14.2622 0.4548 -6.0575 50 1 13.0076 1.5936 -6.7857 51 1 1.7654 -0.1499 -2.1344 52 1 1.6033 -1.7151 -1.2972 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650363269.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:26 Heat of formation + Delta-G solvation = -59.459696 kcal Electronic energy + Delta-G solvation = -29077.665405 eV Core-core repulsion = 25077.154921 eV Total energy + Delta-G solvation = -4000.510484 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -40.61709 -39.23713 -38.05180 -36.74473 -34.84526 -34.23905 -33.11370 -32.27800 -32.00731 -30.73755 -27.35665 -26.38202 -25.77011 -25.08934 -23.07664 -22.75511 -21.13956 -20.71048 -20.27550 -19.40999 -19.16832 -17.60312 -17.37896 -16.27896 -16.17509 -16.10773 -15.44402 -15.11943 -14.96492 -14.85041 -14.66178 -14.25622 -14.01424 -13.85491 -13.66778 -13.61567 -13.12741 -13.07804 -12.87106 -12.60641 -12.53017 -12.28116 -12.02807 -11.77292 -11.59339 -11.58263 -11.42267 -11.29405 -11.16438 -11.03549 -10.92379 -10.83774 -10.53885 -10.21433 -10.03986 -9.67997 -9.42660 -8.99088 -8.92794 -8.73339 -8.50599 -8.25784 -7.77598 -6.09130 -4.18434 2.38532 2.56853 3.21835 3.31130 3.32161 3.36848 3.95214 4.14383 4.25634 4.32194 4.34966 4.45911 4.50743 4.69092 4.78108 4.89592 4.92864 5.01228 5.04749 5.12993 5.19814 5.21035 5.24847 5.29027 5.33985 5.37755 5.39960 5.51565 5.60715 5.67534 5.73720 5.90650 5.94455 6.07040 6.10058 6.18876 6.35557 6.53088 6.62631 6.75450 6.86036 6.94824 7.04550 7.12311 7.38067 7.44085 7.50922 7.71172 7.78823 7.91576 8.34523 8.80874 8.85430 9.36233 9.48359 10.98518 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017244 B = 0.002021 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.390648 B =13854.263318 C =14602.706687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.108 4.108 3 H 0.074 0.926 4 C -0.115 4.115 5 C -0.137 4.137 6 C 0.104 3.896 7 N -0.616 5.616 8 C 0.522 3.478 9 O -0.532 6.532 10 C -0.152 4.152 11 C 0.158 3.842 12 N -0.757 5.757 13 C 0.697 3.303 14 O -0.605 6.605 15 N -0.713 5.713 16 C 0.184 3.816 17 C 0.027 3.973 18 C -0.503 4.503 19 H 0.060 0.940 20 C 0.076 3.924 21 N -0.868 5.868 22 Si 0.889 3.111 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.273 1.273 26 C -0.211 4.211 27 C -0.152 4.152 28 C 0.115 3.885 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.392 0.608 43 H 0.400 0.600 44 H 0.065 0.935 45 H 0.033 0.967 46 H 0.262 0.738 47 H 0.066 0.934 48 H 0.077 0.923 49 H 0.082 0.918 50 H 0.065 0.935 51 H 0.093 0.907 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.731 -0.013 18.154 26.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.127 4.127 3 H 0.093 0.907 4 C -0.153 4.153 5 C -0.175 4.175 6 C -0.019 4.019 7 N -0.351 5.351 8 C 0.310 3.690 9 O -0.407 6.407 10 C -0.193 4.193 11 C 0.033 3.967 12 N -0.414 5.414 13 C 0.397 3.603 14 O -0.484 6.484 15 N -0.366 5.366 16 C 0.059 3.941 17 C 0.026 3.974 18 C -0.541 4.541 19 H 0.078 0.922 20 C -0.129 4.129 21 N -0.504 5.504 22 Si 0.716 3.284 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.198 1.198 26 C -0.248 4.248 27 C -0.190 4.190 28 C -0.007 4.007 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.225 0.775 43 H 0.235 0.765 44 H 0.083 0.917 45 H 0.051 0.949 46 H 0.072 0.928 47 H 0.084 0.916 48 H 0.095 0.905 49 H 0.101 0.899 50 H 0.084 0.916 51 H 0.111 0.889 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -20.365 0.609 16.462 26.193 hybrid contribution 0.708 -1.447 1.221 2.022 sum -19.656 -0.838 17.683 26.453 Atomic orbital electron populations 1.21766 0.94271 1.02097 1.02193 1.21439 0.96080 1.00262 0.94946 0.90747 1.21595 0.95155 1.00881 0.97650 1.21936 0.96272 1.01598 0.97719 1.21794 0.98749 0.97225 0.84093 1.48105 1.06792 1.61643 1.18516 1.20482 0.89143 0.77151 0.82269 1.90750 1.75489 1.43849 1.30650 1.21861 0.92098 1.04217 1.01082 1.20702 0.78494 1.01769 0.95774 1.45026 1.06064 1.68660 1.21684 1.16007 0.82006 0.79454 0.82833 1.90873 1.73833 1.51911 1.31800 1.45098 1.03099 1.65094 1.23301 1.20696 0.89630 0.95260 0.88466 1.19059 0.87356 0.92080 0.98858 1.20256 1.50443 0.90900 0.92452 0.92208 1.24994 0.94481 0.98733 0.94672 1.69978 1.46964 1.27685 1.05727 0.86658 0.78885 0.83518 0.79316 1.20712 1.21189 1.19827 1.23080 1.05429 0.96786 0.99500 1.22494 1.02609 1.02812 0.91100 1.21564 0.79246 1.00812 0.99086 0.92281 0.92261 0.92449 0.91677 0.91578 0.90439 0.91296 0.91121 0.89288 0.88102 0.88195 0.91188 0.91098 0.77472 0.76490 0.91718 0.94853 0.92834 0.91581 0.90458 0.89948 0.91638 0.88864 0.91601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.20 37.16 0.34 -0.39 16 2 C -0.11 -0.66 2.86 -90.72 -0.26 -0.92 16 3 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 4 C -0.12 -0.55 5.17 -26.69 -0.14 -0.69 16 5 C -0.14 -0.63 6.08 -26.61 -0.16 -0.79 16 6 C 0.10 0.57 6.34 -3.71 -0.02 0.54 16 7 N -0.62 -5.23 2.98 -173.04 -0.52 -5.75 16 8 C 0.52 5.93 7.70 -10.99 -0.08 5.84 16 9 O -0.53 -8.33 15.40 5.55 0.09 -8.24 16 10 C -0.15 -1.43 4.16 -27.89 -0.12 -1.55 16 11 C 0.16 2.24 4.96 -4.05 -0.02 2.22 16 12 N -0.76 -11.47 5.56 -65.23 -0.36 -11.83 16 13 C 0.70 14.34 8.57 -86.92 -0.74 13.59 16 14 O -0.60 -14.99 16.34 5.29 0.09 -14.90 16 15 N -0.71 -14.79 5.33 -65.23 -0.35 -15.14 16 16 C 0.18 4.29 5.75 -4.04 -0.02 4.27 16 17 C 0.03 0.64 1.70 -155.66 -0.27 0.38 16 18 C -0.50 -12.59 7.44 -34.44 -0.26 -12.85 16 19 H 0.06 1.45 7.82 -52.48 -0.41 1.04 16 20 C 0.08 1.98 5.39 -17.82 -0.10 1.89 16 21 N -0.87 -23.97 12.97 55.43 0.72 -23.25 16 22 Si 0.89 20.02 29.55 -169.99 -5.02 15.00 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 26 C -0.21 -4.44 9.88 -26.73 -0.26 -4.70 16 27 C -0.15 -3.50 9.51 -26.73 -0.25 -3.75 16 28 C 0.12 0.92 5.69 -3.93 -0.02 0.89 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.09 0.38 5.93 -51.93 -0.31 0.07 16 38 H 0.10 0.76 7.94 -51.93 -0.41 0.35 16 39 H 0.10 0.70 7.69 -51.93 -0.40 0.30 16 40 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 41 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 42 H 0.39 4.60 8.49 -40.82 -0.35 4.25 16 43 H 0.40 7.65 7.47 -40.82 -0.30 7.34 16 44 H 0.06 1.72 8.14 -51.93 -0.42 1.30 16 45 H 0.03 0.76 7.95 -51.93 -0.41 0.35 16 46 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 47 H 0.07 1.28 8.08 -51.93 -0.42 0.86 16 48 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 49 H 0.08 2.00 8.14 -51.93 -0.42 1.57 16 50 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 51 H 0.09 0.93 7.01 -51.93 -0.36 0.56 16 52 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 416.74 15.07 6.28 6.28 Total: -1.00 -33.36 416.74 -10.74 -44.09 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: -9.27 Total: 9.75 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: -2.39 Total: 3.99 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: -0.51 Total: -55.97 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: 0.17 Total: -23.14 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -33.36 -10.74 -44.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650363269.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.365 kcal (2) G-P(sol) polarization free energy of solvation -33.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds