Wall clock time and date at job start Tue Mar 31 2020 21:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.49919 * 2 1 4 4 C 1.53043 * 109.49222 * 120.06319 * 2 1 3 5 5 C 1.53045 * 109.53587 * 181.34843 * 4 2 1 6 6 C 1.53193 * 109.31211 * 298.63587 * 5 4 2 7 7 N 1.46920 * 108.77665 * 54.63331 * 6 5 4 8 8 C 1.34777 * 120.62997 * 126.36740 * 7 6 5 9 9 O 1.21291 * 120.00033 * 179.97438 * 8 7 6 10 10 C 1.50694 * 120.00394 * 0.02562 * 8 7 6 11 11 C 1.52991 * 109.47654 * 179.97438 * 10 8 7 12 12 N 1.46502 * 109.47578 * 179.97438 * 11 10 8 13 13 C 1.34776 * 120.00236 * 179.97438 * 12 11 10 14 14 O 1.21583 * 119.99804 * 0.02562 * 13 12 11 15 15 N 1.34776 * 120.00044 * 180.27800 * 13 12 11 16 16 C 1.46495 * 120.00048 * 179.72860 * 15 13 12 17 17 C 1.53002 * 109.47231 * 181.16714 * 16 15 13 18 18 C 1.50706 * 115.54855 * 39.67997 * 17 16 15 19 19 H 1.08003 * 119.99853 * 264.53359 * 18 17 16 20 20 C 1.37877 * 119.99818 * 84.52858 * 18 17 16 21 21 N 1.31509 * 120.00249 * 352.93359 * 20 18 17 22 22 Si 1.86798 * 119.99843 * 172.92685 * 20 18 17 23 23 H 1.48499 * 109.47240 * 90.00148 * 22 20 18 24 24 H 1.48498 * 109.47142 * 210.00288 * 22 20 18 25 25 H 1.48504 * 109.47363 * 330.00345 * 22 20 18 26 26 C 1.52996 * 117.50012 * 253.97546 * 17 16 15 27 27 C 1.52998 * 60.00120 * 252.50634 * 26 17 16 28 28 C 1.46924 * 118.73874 * 306.64274 * 7 6 5 29 29 H 1.08998 * 109.47231 * 299.93741 * 1 2 3 30 30 H 1.09002 * 109.46746 * 59.93941 * 1 2 3 31 31 H 1.09007 * 109.46747 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46655 * 61.32869 * 4 2 1 33 33 H 1.09001 * 109.46295 * 301.36345 * 4 2 1 34 34 H 1.08997 * 109.49688 * 178.67903 * 5 4 2 35 35 H 1.09002 * 109.49479 * 58.58231 * 5 4 2 36 36 H 1.08994 * 109.58564 * 294.84422 * 6 5 4 37 37 H 1.09000 * 109.70307 * 174.49109 * 6 5 4 38 38 H 1.08997 * 109.47461 * 59.99486 * 10 8 7 39 39 H 1.09006 * 109.46861 * 299.99708 * 10 8 7 40 40 H 1.09002 * 109.47314 * 59.99964 * 11 10 8 41 41 H 1.08997 * 109.47162 * 300.00066 * 11 10 8 42 42 H 0.97001 * 119.99508 * 0.02562 * 12 11 10 43 43 H 0.97002 * 119.99770 * 359.72499 * 15 13 12 44 44 H 1.09001 * 109.47336 * 301.16539 * 16 15 13 45 45 H 1.09003 * 109.47576 * 61.16803 * 16 15 13 46 46 H 0.96999 * 120.00223 * 185.03219 * 21 20 18 47 47 H 1.09001 * 117.50264 * 359.97438 * 26 17 16 48 48 H 1.08997 * 117.50349 * 145.01812 * 26 17 16 49 49 H 1.09001 * 117.50625 * 252.51199 * 27 26 17 50 50 H 1.08999 * 117.52139 * 107.47304 * 27 26 17 51 51 H 1.09000 * 109.58779 * 173.14604 * 28 7 6 52 52 H 1.09001 * 109.58719 * 293.56954 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0407 -0.7227 1.2486 5 6 3.5708 -0.6940 1.2668 6 6 4.1059 -1.4256 0.0318 7 7 3.5054 -0.8285 -1.1688 8 6 4.2820 -0.3847 -2.1769 9 8 3.7741 0.1059 -3.1630 10 6 5.7815 -0.4991 -2.0795 11 6 6.4201 0.0732 -3.3465 12 7 7.8778 -0.0374 -3.2515 13 6 8.6544 0.4055 -4.2601 14 8 8.1452 0.8974 -5.2485 15 7 9.9953 0.2986 -4.1751 16 6 10.8391 0.7747 -5.2739 17 6 12.3087 0.5112 -4.9394 18 6 12.5955 -0.8045 -4.2627 19 1 12.6678 -0.8536 -3.1862 20 6 12.7653 -1.9455 -5.0178 21 7 12.5409 -1.9162 -6.3133 22 14 13.3144 -3.5331 -4.2007 23 1 12.1223 -4.3012 -3.7603 24 1 14.0955 -4.3438 -5.1692 25 1 14.1620 -3.2164 -3.0232 26 6 13.1693 1.7124 -4.5429 27 6 13.3618 1.0511 -5.9091 28 6 2.0423 -0.7187 -1.2468 29 1 -0.3633 0.5128 0.8905 30 1 -0.3633 0.5148 -0.8895 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6971 -1.7571 1.2357 33 1 1.6577 -0.2242 2.1390 34 1 3.9333 -1.1883 2.1680 35 1 3.9154 0.3400 1.2547 36 1 3.8387 -2.4808 0.0878 37 1 5.1904 -1.3253 -0.0136 38 1 6.0599 -1.5477 -1.9746 39 1 6.1328 0.0587 -1.2114 40 1 6.1418 1.1219 -3.4519 41 1 6.0688 -0.4848 -4.2144 42 1 8.2840 -0.4301 -2.4631 43 1 10.4015 -0.0935 -3.3863 44 1 10.5748 0.2467 -6.1901 45 1 10.6845 1.8446 -5.4136 46 1 12.5893 -2.7341 -6.8325 47 1 12.6888 2.6905 -4.5208 48 1 13.9431 1.5513 -3.7924 49 1 14.2622 0.4548 -6.0575 50 1 13.0076 1.5936 -6.7857 51 1 1.7654 -0.1499 -2.1344 52 1 1.6033 -1.7151 -1.2972 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650363269.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:23 Heat of formation + Delta-G solvation = -81.494041 kcal Electronic energy + Delta-G solvation = -29078.620886 eV Core-core repulsion = 25077.154921 eV Total energy + Delta-G solvation = -4001.465965 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.21 seconds Orbital eigenvalues (eV) -41.41492 -40.81419 -38.81051 -38.49903 -36.18153 -34.92686 -34.85703 -33.96874 -32.76937 -31.82600 -28.26340 -27.66616 -27.10934 -26.41091 -24.15366 -23.21142 -22.91509 -21.88681 -21.28417 -21.20665 -19.97957 -19.04297 -18.35878 -17.98612 -17.13715 -16.93645 -16.87029 -16.54658 -16.28313 -15.85038 -15.59781 -15.34100 -15.24187 -15.07708 -14.81246 -14.46110 -14.34776 -14.26626 -13.98820 -13.69532 -13.54960 -13.44683 -13.13020 -12.88493 -12.82391 -12.80580 -12.57482 -12.49126 -12.30529 -11.99851 -11.99021 -11.80309 -11.62393 -11.52711 -11.29838 -11.27703 -10.87592 -10.79259 -10.43925 -10.31569 -10.00842 -9.66668 -9.49484 -8.05891 -6.19957 1.44973 1.49222 1.54207 1.57235 1.66614 2.13414 2.29029 2.45458 3.21252 3.36286 3.51030 3.68829 3.70770 3.85280 3.89985 3.96276 4.06193 4.11043 4.30122 4.32775 4.39048 4.52285 4.56392 4.59970 4.66450 4.71675 4.76714 4.80586 4.82412 4.86077 4.88749 4.91588 4.93704 5.03499 5.09868 5.13525 5.19495 5.27005 5.29378 5.31143 5.48488 5.50429 5.51990 5.56794 5.64964 5.78223 5.81991 6.21318 6.34657 6.40898 6.88041 7.10119 7.32096 7.50022 7.73887 9.01599 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017244 B = 0.002021 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.390648 B =13854.263318 C =14602.706687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.103 4.103 3 H 0.058 0.942 4 C -0.113 4.113 5 C -0.134 4.134 6 C 0.096 3.904 7 N -0.609 5.609 8 C 0.514 3.486 9 O -0.589 6.589 10 C -0.136 4.136 11 C 0.161 3.839 12 N -0.731 5.731 13 C 0.693 3.307 14 O -0.652 6.652 15 N -0.707 5.707 16 C 0.197 3.803 17 C 0.003 3.997 18 C -0.501 4.501 19 H 0.070 0.930 20 C 0.026 3.974 21 N -0.907 5.907 22 Si 0.952 3.048 23 H -0.275 1.275 24 H -0.296 1.296 25 H -0.262 1.262 26 C -0.178 4.178 27 C -0.164 4.164 28 C 0.111 3.889 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.099 0.901 35 H 0.060 0.940 36 H 0.086 0.914 37 H 0.107 0.893 38 H 0.131 0.869 39 H 0.135 0.865 40 H 0.048 0.952 41 H 0.041 0.959 42 H 0.414 0.586 43 H 0.410 0.590 44 H 0.022 0.978 45 H 0.035 0.965 46 H 0.257 0.743 47 H 0.087 0.913 48 H 0.087 0.913 49 H 0.064 0.936 50 H 0.068 0.932 51 H 0.064 0.936 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.517 -1.092 22.215 29.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.122 4.122 3 H 0.076 0.924 4 C -0.151 4.151 5 C -0.172 4.172 6 C -0.026 4.026 7 N -0.342 5.342 8 C 0.303 3.697 9 O -0.470 6.470 10 C -0.176 4.176 11 C 0.036 3.964 12 N -0.389 5.389 13 C 0.392 3.608 14 O -0.535 6.535 15 N -0.361 5.361 16 C 0.072 3.928 17 C 0.002 3.998 18 C -0.538 4.538 19 H 0.088 0.912 20 C -0.175 4.175 21 N -0.544 5.544 22 Si 0.778 3.222 23 H -0.200 1.200 24 H -0.223 1.223 25 H -0.186 1.186 26 C -0.215 4.215 27 C -0.202 4.202 28 C -0.011 4.011 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.117 0.883 35 H 0.079 0.921 36 H 0.104 0.896 37 H 0.125 0.875 38 H 0.149 0.851 39 H 0.153 0.847 40 H 0.066 0.934 41 H 0.059 0.941 42 H 0.251 0.749 43 H 0.247 0.753 44 H 0.040 0.960 45 H 0.054 0.946 46 H 0.066 0.934 47 H 0.106 0.894 48 H 0.106 0.894 49 H 0.083 0.917 50 H 0.086 0.914 51 H 0.082 0.918 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -20.154 -0.507 20.652 28.860 hybrid contribution 0.582 -1.081 -0.021 1.228 sum -19.572 -1.588 20.631 28.482 Atomic orbital electron populations 1.21755 0.93506 1.02654 1.02200 1.21383 0.96713 0.99272 0.94849 0.92363 1.21600 0.95496 1.01154 0.96831 1.21938 0.95929 1.01274 0.98083 1.22135 0.99760 0.97883 0.82787 1.48220 1.06883 1.60345 1.18732 1.20839 0.90086 0.76695 0.82091 1.90735 1.76493 1.46696 1.33031 1.21772 0.90316 1.06128 0.99362 1.20633 0.77741 1.00466 0.97591 1.44745 1.06082 1.67078 1.20973 1.16232 0.82074 0.79268 0.83226 1.90844 1.74585 1.53974 1.34086 1.44890 1.03097 1.65179 1.22925 1.20362 0.90044 0.94734 0.87661 1.19155 0.87448 0.93159 1.00025 1.20558 1.49048 0.91314 0.92906 0.91184 1.25742 0.94744 1.01976 0.95053 1.70132 1.48859 1.28117 1.07257 0.85653 0.78486 0.79738 0.78320 1.20042 1.22293 1.18605 1.23077 1.04076 0.96536 0.97817 1.22433 1.01821 1.03484 0.92440 1.21620 0.79312 1.01232 0.98949 0.91381 0.93180 0.91592 0.90822 0.90764 0.88299 0.92108 0.89626 0.87483 0.85132 0.84710 0.93376 0.94083 0.74865 0.75310 0.96004 0.94631 0.93406 0.89447 0.89404 0.91729 0.91367 0.91777 0.90422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.20 71.98 0.66 -0.65 16 2 C -0.10 -1.16 2.86 -10.86 -0.03 -1.19 16 3 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 4 C -0.11 -0.79 5.17 30.62 0.16 -0.63 16 5 C -0.13 -0.79 6.08 30.67 0.19 -0.60 16 6 C 0.10 0.70 6.34 86.36 0.55 1.25 16 7 N -0.61 -9.48 2.98 -819.76 -2.44 -11.92 16 8 C 0.51 11.42 7.70 87.66 0.67 12.10 16 9 O -0.59 -19.46 15.40 -3.06 -0.05 -19.51 16 10 C -0.14 -2.24 4.16 29.84 0.12 -2.12 16 11 C 0.16 4.55 4.96 86.38 0.43 4.98 16 12 N -0.73 -21.19 5.56 -478.55 -2.66 -23.85 16 13 C 0.69 28.48 8.57 179.05 1.53 30.01 16 14 O -0.65 -33.33 16.34 -3.98 -0.06 -33.39 16 15 N -0.71 -28.97 5.33 -478.54 -2.55 -31.52 16 16 C 0.20 9.32 5.75 86.38 0.50 9.81 16 17 C 0.00 0.14 1.70 -52.93 -0.09 0.04 16 18 C -0.50 -24.45 7.44 25.60 0.19 -24.26 16 19 H 0.07 3.22 7.82 -2.91 -0.02 3.20 16 20 C 0.03 1.33 5.39 84.66 0.46 1.79 16 21 N -0.91 -50.89 12.97 21.45 0.28 -50.62 16 22 Si 0.95 40.50 29.55 68.60 2.03 42.53 16 23 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 24 H -0.30 -13.03 7.11 99.48 0.71 -12.32 16 25 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 26 C -0.18 -7.12 9.88 30.59 0.30 -6.81 16 27 C -0.16 -7.50 9.51 30.59 0.29 -7.21 16 28 C 0.11 1.74 5.69 86.22 0.49 2.23 16 29 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 32 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 35 H 0.06 0.48 8.14 -2.39 -0.02 0.47 16 36 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.11 0.41 5.93 -2.39 -0.01 0.40 16 38 H 0.13 1.44 7.94 -2.39 -0.02 1.42 16 39 H 0.14 1.34 7.69 -2.38 -0.02 1.32 16 40 H 0.05 1.59 8.10 -2.39 -0.02 1.57 16 41 H 0.04 1.42 8.10 -2.39 -0.02 1.40 16 42 H 0.41 8.42 8.49 -92.71 -0.79 7.63 16 43 H 0.41 14.95 7.47 -92.71 -0.69 14.26 16 44 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.04 1.64 7.95 -2.39 -0.02 1.62 16 46 H 0.26 14.03 8.32 -92.71 -0.77 13.26 16 47 H 0.09 3.13 8.08 -2.39 -0.02 3.11 16 48 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 49 H 0.06 3.16 8.14 -2.39 -0.02 3.14 16 50 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 51 H 0.06 1.38 7.01 -2.39 -0.02 1.37 16 52 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -76.29 416.74 0.39 -75.90 By element: Atomic # 1 Polarization: 34.20 SS G_CDS: -0.57 Total: 33.63 kcal Atomic # 6 Polarization: 12.32 SS G_CDS: 6.42 Total: 18.74 kcal Atomic # 7 Polarization: -110.53 SS G_CDS: -7.38 Total: -117.90 kcal Atomic # 8 Polarization: -52.79 SS G_CDS: -0.11 Total: -52.90 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Total: -76.29 0.39 -75.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650363269.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.591 kcal (2) G-P(sol) polarization free energy of solvation -76.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds