Wall clock time and date at job start Tue Mar 31 2020 21:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.52441 * 2 1 4 4 C 1.53045 * 109.49339 * 239.91568 * 2 1 3 5 5 C 1.53035 * 109.53289 * 178.68188 * 4 2 1 6 6 C 1.52763 * 109.38385 * 61.24721 * 5 4 2 7 7 N 1.46927 * 109.00544 * 305.58299 * 6 5 4 8 8 C 1.34778 * 120.62943 * 233.58207 * 7 6 5 9 9 O 1.21348 * 119.99966 * 181.67688 * 8 7 6 10 10 C 1.49454 * 120.00199 * 1.67874 * 8 7 6 11 11 O 1.21347 * 119.99620 * 353.06766 * 10 8 7 12 12 N 1.34773 * 119.99624 * 173.06861 * 10 8 7 13 13 C 1.46507 * 119.99350 * 179.97438 * 12 10 8 14 14 C 1.52997 * 109.46814 * 180.02562 * 13 12 10 15 15 H 1.09001 * 110.81654 * 303.11809 * 14 13 12 16 16 C 1.54885 * 110.75892 * 66.45489 * 14 13 12 17 17 C 1.54268 * 104.20098 * 156.25890 * 16 14 13 18 18 C 1.53877 * 106.59291 * 336.38747 * 17 16 14 19 19 H 1.09003 * 110.02931 * 119.33362 * 18 17 16 20 20 N 1.46496 * 110.03584 * 240.71667 * 18 17 16 21 21 C 1.36939 * 120.00028 * 273.55141 * 20 18 17 22 22 H 1.08001 * 120.00110 * 359.97438 * 21 20 18 23 23 C 1.38811 * 120.00426 * 179.97438 * 21 20 18 24 24 N 1.31621 * 119.99747 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00515 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.46806 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.47007 * 120.00192 * 25 23 21 28 28 H 1.48493 * 109.47413 * 240.00617 * 25 23 21 29 29 C 1.54266 * 106.60050 * 0.02562 * 18 17 16 30 30 C 1.46920 * 118.73858 * 53.31047 * 7 6 5 31 31 H 1.09003 * 109.47012 * 299.91816 * 1 2 3 32 32 H 1.08998 * 109.47481 * 59.91845 * 1 2 3 33 33 H 1.09004 * 109.47668 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.46375 * 298.70342 * 4 2 1 35 35 H 1.09002 * 109.45794 * 58.68345 * 4 2 1 36 36 H 1.09003 * 109.49701 * 181.32417 * 5 4 2 37 37 H 1.09002 * 109.50715 * 301.41789 * 5 4 2 38 38 H 1.09001 * 109.51159 * 185.70614 * 6 5 4 39 39 H 1.08993 * 109.43244 * 65.42152 * 6 5 4 40 40 H 0.96998 * 120.00281 * 359.97438 * 12 10 8 41 41 H 1.09002 * 109.47162 * 60.00129 * 13 12 10 42 42 H 1.08998 * 109.47222 * 299.99811 * 13 12 10 43 43 H 1.08999 * 110.49044 * 37.57612 * 16 14 13 44 44 H 1.09010 * 110.48643 * 274.93567 * 16 14 13 45 45 H 1.09000 * 110.03511 * 95.67167 * 17 16 14 46 46 H 1.08998 * 110.03418 * 217.06416 * 17 16 14 47 47 H 0.96992 * 120.00338 * 93.54438 * 20 18 17 48 48 H 0.97002 * 120.00067 * 179.97438 * 24 23 21 49 49 H 1.09003 * 110.48780 * 142.28831 * 29 18 17 50 50 H 1.09005 * 110.48302 * 264.79665 * 29 18 17 51 51 H 1.09000 * 109.58685 * 66.42904 * 30 7 6 52 52 H 1.09000 * 109.59175 * 186.85240 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0407 -0.7232 -1.2484 5 6 3.5707 -0.6951 -1.2660 6 6 4.1054 -1.4217 -0.0333 7 7 3.5046 -0.8292 1.1695 8 6 4.2812 -0.3857 2.1778 9 8 3.7720 0.0738 3.1789 10 6 5.7694 -0.4598 2.0631 11 8 6.2775 -1.0317 1.1211 12 7 6.5471 0.1086 3.0057 13 6 8.0060 0.0354 2.8934 14 6 8.6456 0.7534 4.0834 15 1 8.3045 1.7871 4.1412 16 6 8.3456 0.0018 5.4040 17 6 9.4856 0.4304 6.3509 18 6 10.6588 0.8676 5.4564 19 1 10.9034 1.9128 5.6458 20 7 11.8284 0.0240 5.7148 21 6 12.6953 0.3463 6.7246 22 1 12.5171 1.2226 7.3303 23 6 13.8033 -0.4532 6.9699 24 7 14.0208 -1.5208 6.2314 25 14 14.9863 -0.0132 8.3469 26 1 14.5210 1.2247 9.0225 27 1 15.0363 -1.1246 9.3305 28 1 16.3417 0.2099 7.7828 29 6 10.1906 0.6899 3.9973 30 6 2.0413 -0.7239 1.2496 31 1 -0.3633 0.5126 0.8907 32 1 -0.3634 0.5151 -0.8892 33 1 -0.3634 -1.0277 -0.0005 34 1 1.6966 -1.7574 -1.2353 35 1 1.6583 -0.2244 -2.1389 36 1 3.9333 -1.1897 -2.1672 37 1 3.9159 0.3388 -1.2541 38 1 5.1894 -1.3161 0.0100 39 1 3.8411 -2.4775 -0.0916 40 1 6.1409 0.5660 3.7584 41 1 8.3235 0.5135 1.9667 42 1 8.3182 -1.0089 2.8891 43 1 8.3682 -1.0760 5.2432 44 1 7.3799 0.3082 5.8065 45 1 9.1602 1.2637 6.9738 46 1 9.7858 -0.4092 6.9778 47 1 11.9886 -0.7628 5.1707 48 1 14.7952 -2.0793 6.4025 49 1 10.5718 1.4982 3.3732 50 1 10.5131 -0.2759 3.6081 51 1 1.6052 -1.7216 1.2980 52 1 1.7637 -0.1580 2.1389 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656354129.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:27 Heat of formation + Delta-G solvation = -83.802053 kcal Electronic energy + Delta-G solvation = -29253.285336 eV Core-core repulsion = 25251.719288 eV Total energy + Delta-G solvation = -4001.566048 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.11001 -40.23565 -39.35717 -38.80847 -36.54808 -35.21878 -34.53829 -32.85525 -32.57975 -30.48813 -28.98019 -28.20032 -27.16341 -25.98957 -24.96830 -23.71404 -23.23960 -21.83152 -21.16021 -20.66344 -20.53088 -19.13754 -18.63128 -18.14846 -17.23520 -17.14768 -16.75425 -16.48897 -16.28365 -15.97973 -15.64069 -15.38389 -15.27684 -15.14076 -14.92219 -14.60869 -14.31422 -14.08644 -14.07231 -13.64296 -13.51048 -13.21379 -13.13614 -13.04857 -12.78605 -12.61608 -12.43636 -12.38397 -12.09398 -12.03665 -11.93564 -11.81377 -11.74454 -11.66645 -11.60791 -11.54458 -11.33452 -11.26949 -10.91819 -10.34013 -10.09612 -9.81946 -8.96481 -7.93234 -5.20621 0.26981 1.22771 1.47290 1.47612 1.57592 2.05017 2.41125 2.57315 3.20506 3.39369 3.64263 3.73564 3.76514 3.81409 3.83128 3.92705 4.09263 4.24575 4.31615 4.36369 4.40359 4.50362 4.56521 4.59730 4.63609 4.69041 4.74590 4.76890 4.78765 4.84610 4.87364 4.88991 4.92359 5.05926 5.06813 5.11821 5.14523 5.18929 5.24267 5.28627 5.35047 5.44865 5.46539 5.49508 5.53015 5.54828 5.68085 5.94393 6.17778 6.30628 6.65708 6.88532 7.35538 8.15185 8.36135 9.30602 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.035638 B = 0.001734 C = 0.001691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.481552 B =16142.767396 C =16558.749724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.102 4.102 3 H 0.063 0.937 4 C -0.114 4.114 5 C -0.130 4.130 6 C 0.043 3.957 7 N -0.575 5.575 8 C 0.504 3.496 9 O -0.548 6.548 10 C 0.507 3.493 11 O -0.526 6.526 12 N -0.681 5.681 13 C 0.131 3.869 14 C -0.087 4.087 15 H 0.105 0.895 16 C -0.109 4.109 17 C -0.140 4.140 18 C 0.163 3.837 19 H 0.045 0.955 20 N -0.736 5.736 21 C -0.236 4.236 22 H 0.075 0.925 23 C -0.079 4.079 24 N -0.971 5.971 25 Si 0.970 3.030 26 H -0.266 1.266 27 H -0.296 1.296 28 H -0.294 1.294 29 C -0.111 4.111 30 C 0.107 3.893 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.055 0.945 38 H 0.145 0.855 39 H 0.075 0.925 40 H 0.419 0.581 41 H 0.083 0.917 42 H 0.067 0.933 43 H 0.054 0.946 44 H 0.080 0.920 45 H 0.062 0.938 46 H 0.038 0.962 47 H 0.371 0.629 48 H 0.249 0.751 49 H 0.077 0.923 50 H 0.059 0.941 51 H 0.085 0.915 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.277 3.767 -16.511 33.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.121 4.121 3 H 0.081 0.919 4 C -0.152 4.152 5 C -0.168 4.168 6 C -0.077 4.077 7 N -0.306 5.306 8 C 0.286 3.714 9 O -0.427 6.427 10 C 0.289 3.711 11 O -0.405 6.405 12 N -0.333 5.333 13 C 0.008 3.992 14 C -0.106 4.106 15 H 0.123 0.877 16 C -0.147 4.147 17 C -0.181 4.181 18 C 0.054 3.946 19 H 0.064 0.936 20 N -0.376 5.376 21 C -0.368 4.368 22 H 0.093 0.907 23 C -0.271 4.271 24 N -0.622 5.622 25 Si 0.799 3.201 26 H -0.191 1.191 27 H -0.223 1.223 28 H -0.221 1.221 29 C -0.150 4.150 30 C -0.015 4.015 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.109 0.891 37 H 0.074 0.926 38 H 0.162 0.838 39 H 0.093 0.907 40 H 0.257 0.743 41 H 0.101 0.899 42 H 0.085 0.915 43 H 0.073 0.927 44 H 0.099 0.901 45 H 0.081 0.919 46 H 0.057 0.943 47 H 0.204 0.796 48 H 0.058 0.942 49 H 0.095 0.905 50 H 0.078 0.922 51 H 0.103 0.897 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -29.094 3.726 -16.485 33.647 hybrid contribution 0.936 -0.248 1.127 1.486 sum -28.158 3.477 -15.358 32.262 Atomic orbital electron populations 1.21742 0.92811 1.02796 1.02562 1.21467 0.97121 0.99270 0.94247 0.91854 1.21636 0.94804 1.01307 0.97441 1.21816 0.96376 1.00815 0.97793 1.23285 1.04667 0.97187 0.82611 1.48128 1.07360 1.57388 1.17767 1.20093 0.87975 0.79385 0.83902 1.90744 1.75265 1.46244 1.30426 1.20183 0.88065 0.79793 0.83055 1.90325 1.74804 1.43915 1.31497 1.45820 1.07428 1.54294 1.25718 1.21521 0.77048 1.01369 0.99219 1.22220 0.94575 1.00599 0.93245 0.87684 1.22350 0.98157 0.99481 0.94682 1.22805 0.96412 1.00251 0.98602 1.21145 0.86314 0.93616 0.93507 0.93646 1.42752 1.26201 1.30121 1.38494 1.19687 1.02201 1.06961 1.07972 0.90744 1.25529 1.01060 0.98066 1.02415 1.69823 1.30620 1.18210 1.43552 0.85116 0.78725 0.77396 0.78814 1.19052 1.22319 1.22127 1.22486 0.94190 1.02091 0.96195 1.21988 0.77641 1.02066 0.99795 0.92447 0.91353 0.91610 0.90888 0.90479 0.89067 0.92606 0.83843 0.90678 0.74329 0.89861 0.91480 0.92717 0.90119 0.91937 0.94322 0.79650 0.94178 0.90478 0.92232 0.89714 0.89979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.20 71.98 0.66 -0.39 16 2 C -0.10 -1.10 2.87 -10.71 -0.03 -1.13 16 3 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 4 C -0.11 -1.04 5.17 30.62 0.16 -0.88 16 5 C -0.13 -1.52 6.06 30.53 0.19 -1.33 16 6 C 0.04 0.67 6.20 86.22 0.53 1.21 16 7 N -0.57 -10.49 2.98 -821.32 -2.45 -12.94 16 8 C 0.50 11.34 7.76 87.27 0.68 12.01 16 9 O -0.55 -14.39 15.91 -3.24 -0.05 -14.44 16 10 C 0.51 11.45 7.80 87.27 0.68 12.13 16 11 O -0.53 -13.19 13.02 -3.24 -0.04 -13.23 16 12 N -0.68 -13.65 5.39 -464.40 -2.50 -16.15 16 13 C 0.13 2.74 5.11 86.38 0.44 3.18 16 14 C -0.09 -1.93 2.96 -9.51 -0.03 -1.96 16 15 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 16 C -0.11 -2.77 5.97 31.67 0.19 -2.59 16 17 C -0.14 -4.72 6.59 31.32 0.21 -4.51 16 18 C 0.16 6.15 3.55 45.72 0.16 6.31 16 19 H 0.05 1.75 8.10 -2.39 -0.02 1.73 16 20 N -0.74 -36.85 5.04 -319.51 -1.61 -38.46 16 21 C -0.24 -13.13 9.96 84.03 0.84 -12.29 16 22 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 23 C -0.08 -4.55 5.50 84.86 0.47 -4.09 16 24 N -0.97 -59.94 13.06 21.65 0.28 -59.65 16 25 Si 0.97 46.53 29.55 68.60 2.03 48.56 16 26 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 27 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 28 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 29 C -0.11 -3.26 5.97 31.66 0.19 -3.07 16 30 C 0.11 1.54 5.71 86.36 0.49 2.04 16 31 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.06 0.40 8.14 -2.38 -0.02 0.38 16 34 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.15 2.85 3.78 -82.31 -0.31 2.54 16 39 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.42 7.55 7.82 -92.71 -0.73 6.82 16 41 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.07 1.60 8.10 -2.39 -0.02 1.58 16 43 H 0.05 1.52 8.01 -2.39 -0.02 1.50 16 44 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 45 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 46 H 0.04 1.56 7.92 -2.39 -0.02 1.54 16 47 H 0.37 20.08 7.54 -92.71 -0.70 19.38 16 48 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 49 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 50 H 0.06 1.93 7.64 -2.38 -0.02 1.91 16 51 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 52 H 0.08 1.41 7.01 -2.39 -0.02 1.39 16 Total: -1.00 -68.14 406.85 0.67 -67.47 By element: Atomic # 1 Polarization: 35.02 SS G_CDS: -0.81 Total: 34.21 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: 5.82 Total: 4.64 kcal Atomic # 7 Polarization: -120.93 SS G_CDS: -6.28 Total: -127.21 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: -0.09 Total: -27.67 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -68.14 0.67 -67.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656354129.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.329 kcal (2) G-P(sol) polarization free energy of solvation -68.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds