Wall clock time and date at job start Tue Mar 31 2020 21:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.49406 * 2 1 4 4 C 1.53038 * 109.50133 * 120.09321 * 2 1 3 5 5 C 1.53042 * 109.53743 * 181.31628 * 4 2 1 6 6 C 1.53619 * 109.24443 * 298.51563 * 5 4 2 7 7 N 1.46930 * 108.54323 * 54.85566 * 6 5 4 8 8 C 1.34776 * 120.62679 * 126.37343 * 7 6 5 9 9 O 1.21352 * 119.99594 * 188.42463 * 8 7 6 10 10 C 1.49440 * 120.00268 * 8.41872 * 8 7 6 11 11 O 1.21348 * 120.00364 * 6.75390 * 10 8 7 12 12 N 1.34780 * 119.99960 * 186.74885 * 10 8 7 13 13 C 1.46506 * 120.00032 * 180.27991 * 12 10 8 14 14 C 1.53001 * 109.46875 * 179.72446 * 13 12 10 15 15 H 1.08995 * 110.43407 * 305.69570 * 14 13 12 16 16 C 1.54883 * 110.48715 * 68.24062 * 14 13 12 17 17 C 1.55032 * 102.68374 * 156.51288 * 16 14 13 18 18 C 1.54269 * 104.28138 * 322.23489 * 17 16 14 19 19 H 1.08993 * 110.07092 * 142.82056 * 18 17 16 20 20 N 1.46490 * 110.03076 * 264.23078 * 18 17 16 21 21 C 1.36942 * 120.00294 * 272.16354 * 20 18 17 22 22 H 1.07995 * 119.99553 * 0.02562 * 21 20 18 23 23 C 1.38805 * 120.00140 * 179.97438 * 21 20 18 24 24 N 1.31621 * 120.00135 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00004 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.46673 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47221 * 119.99891 * 25 23 21 28 28 H 1.48498 * 109.47261 * 240.00332 * 25 23 21 29 29 C 1.53872 * 106.59767 * 23.51587 * 18 17 16 30 30 C 1.46925 * 118.73521 * 306.09117 * 7 6 5 31 31 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47405 * 300.06266 * 1 2 3 33 33 H 1.08998 * 109.47567 * 60.06529 * 1 2 3 34 34 H 1.08992 * 109.46174 * 301.34307 * 4 2 1 35 35 H 1.09003 * 109.45595 * 61.29775 * 4 2 1 36 36 H 1.08998 * 109.49277 * 58.58990 * 5 4 2 37 37 H 1.08996 * 109.49578 * 178.65026 * 5 4 2 38 38 H 1.08999 * 109.73960 * 295.11655 * 6 5 4 39 39 H 1.09002 * 109.66404 * 174.55068 * 6 5 4 40 40 H 0.97000 * 119.99995 * 359.97438 * 12 10 8 41 41 H 1.08999 * 109.46910 * 299.72524 * 13 12 10 42 42 H 1.08996 * 109.46874 * 59.72122 * 13 12 10 43 43 H 1.09003 * 110.75930 * 274.93280 * 16 14 13 44 44 H 1.09000 * 110.75747 * 38.30487 * 16 14 13 45 45 H 1.09001 * 110.52513 * 203.48497 * 17 16 14 46 46 H 1.09007 * 110.36344 * 80.90159 * 17 16 14 47 47 H 0.96998 * 120.00469 * 92.16454 * 20 18 17 48 48 H 0.97005 * 119.99828 * 179.97438 * 24 23 21 49 49 H 1.09003 * 110.03517 * 240.71826 * 29 18 17 50 50 H 1.08996 * 110.07576 * 119.30709 * 29 18 17 51 51 H 1.09004 * 109.58143 * 173.65075 * 30 7 6 52 52 H 1.08995 * 109.58801 * 293.92983 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0409 -0.7233 1.2481 5 6 3.5709 -0.6952 1.2657 6 6 4.1051 -1.4316 0.0278 7 7 3.5046 -0.8286 -1.1699 8 6 4.2811 -0.3856 -2.1785 9 8 3.7892 0.2461 -3.0905 10 6 5.7477 -0.6723 -2.1738 11 8 6.2200 -1.4054 -1.3300 12 7 6.5460 -0.1167 -3.1069 13 6 7.9829 -0.4026 -3.1060 14 6 8.6516 0.3417 -4.2635 15 1 8.1604 0.0996 -5.2059 16 6 8.6227 1.8700 -4.0140 17 6 9.8040 2.3786 -4.8796 18 6 10.8860 1.2899 -4.7243 19 1 11.4136 1.1496 -5.6676 20 7 11.8320 1.6692 -3.6721 21 6 12.9236 2.4377 -3.9772 22 1 13.0868 2.7645 -4.9935 23 6 13.8197 2.7975 -2.9801 24 7 13.6206 2.3996 -1.7414 25 14 15.3084 3.8464 -3.3963 26 1 15.3029 4.1597 -4.8479 27 1 15.2570 5.1098 -2.6175 28 1 16.5482 3.1041 -3.0543 29 6 10.1532 -0.0052 -4.3325 30 6 2.0413 -0.7234 -1.2498 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5148 0.8894 33 1 -0.3634 0.5128 -0.8905 34 1 1.6582 -0.2251 2.1388 35 1 1.6968 -1.7575 1.2348 36 1 3.9159 0.3387 1.2540 37 1 3.9335 -1.1895 2.1669 38 1 3.8340 -2.4860 0.0812 39 1 5.1897 -1.3329 -0.0180 40 1 6.1684 0.4690 -3.7817 41 1 8.4182 -0.0734 -2.1625 42 1 8.1400 -1.4746 -3.2241 43 1 7.6798 2.2991 -4.3531 44 1 8.7930 2.0928 -2.9607 45 1 10.1686 3.3350 -4.5047 46 1 9.4994 2.4677 -5.9224 47 1 11.6853 1.3760 -2.7592 48 1 14.2470 2.6507 -1.0447 49 1 10.5015 -0.3516 -3.3595 50 1 10.3245 -0.7744 -5.0856 51 1 1.7637 -0.1573 -2.1390 52 1 1.6055 -1.7211 -1.3011 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656354130.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:33 Heat of formation + Delta-G solvation = -67.600348 kcal Electronic energy + Delta-G solvation = -29470.489296 eV Core-core repulsion = 25469.625807 eV Total energy + Delta-G solvation = -4000.863489 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.17719 -39.30308 -38.14725 -37.93629 -35.29033 -34.00497 -33.25103 -32.20140 -30.75197 -29.13779 -27.79656 -27.29724 -26.36603 -24.73499 -23.25703 -22.77993 -22.61494 -20.83593 -20.25818 -19.61796 -19.15324 -17.76373 -17.24007 -17.10046 -16.39378 -16.01809 -15.65357 -15.37174 -15.10456 -14.75625 -14.66994 -14.46953 -14.20167 -13.87205 -13.69521 -13.47582 -13.28913 -13.23082 -13.00089 -12.66404 -12.54130 -12.26762 -12.17571 -11.74431 -11.47633 -11.39980 -11.25260 -11.21262 -10.99066 -10.82219 -10.78921 -10.74174 -10.58854 -10.50451 -10.27655 -10.17910 -9.92800 -9.62785 -9.43937 -9.22164 -9.04065 -8.88164 -6.92910 -5.75927 -3.04062 1.22238 2.11030 2.99496 3.27670 3.43431 3.49285 3.51365 4.11870 4.31599 4.37593 4.47177 4.59456 4.67074 4.80919 4.91136 4.92405 5.00586 5.07477 5.12230 5.18342 5.29155 5.33999 5.39262 5.51462 5.54646 5.57951 5.59054 5.67206 5.68636 5.69219 5.74348 5.76400 5.90126 5.98002 5.98666 6.01682 6.09055 6.10796 6.20210 6.31940 6.34034 6.46792 6.65716 6.74849 6.78019 6.91156 7.06662 7.12204 7.53108 7.72626 7.81901 8.43489 9.54198 10.13666 10.47498 11.46752 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020568 B = 0.001955 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.033511 B =14318.112037 C =14843.796122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 H 0.076 0.924 4 C -0.117 4.117 5 C -0.137 4.137 6 C 0.068 3.932 7 N -0.583 5.583 8 C 0.509 3.491 9 O -0.524 6.524 10 C 0.505 3.495 11 O -0.514 6.514 12 N -0.689 5.689 13 C 0.122 3.878 14 C -0.105 4.105 15 H 0.077 0.923 16 C -0.115 4.115 17 C -0.146 4.146 18 C 0.174 3.826 19 H 0.049 0.951 20 N -0.721 5.721 21 C -0.237 4.237 22 H 0.070 0.930 23 C -0.015 4.015 24 N -0.933 5.933 25 Si 0.905 3.095 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 C -0.120 4.120 30 C 0.112 3.888 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.143 0.857 40 H 0.412 0.588 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.054 0.946 44 H 0.069 0.931 45 H 0.072 0.928 46 H 0.049 0.951 47 H 0.383 0.617 48 H 0.254 0.746 49 H 0.073 0.927 50 H 0.062 0.938 51 H 0.094 0.906 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.647 -8.637 2.488 28.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.126 4.126 3 H 0.094 0.906 4 C -0.154 4.154 5 C -0.175 4.175 6 C -0.054 4.054 7 N -0.316 5.316 8 C 0.292 3.708 9 O -0.400 6.400 10 C 0.286 3.714 11 O -0.392 6.392 12 N -0.341 5.341 13 C 0.000 4.000 14 C -0.124 4.124 15 H 0.095 0.905 16 C -0.153 4.153 17 C -0.186 4.186 18 C 0.064 3.936 19 H 0.067 0.933 20 N -0.362 5.362 21 C -0.369 4.369 22 H 0.088 0.912 23 C -0.211 4.211 24 N -0.581 5.581 25 Si 0.736 3.264 26 H -0.206 1.206 27 H -0.220 1.220 28 H -0.219 1.219 29 C -0.159 4.159 30 C -0.010 4.010 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.160 0.840 40 H 0.249 0.751 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.072 0.928 44 H 0.087 0.913 45 H 0.091 0.909 46 H 0.067 0.933 47 H 0.217 0.783 48 H 0.064 0.936 49 H 0.092 0.908 50 H 0.081 0.919 51 H 0.112 0.888 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -26.385 -8.730 2.504 27.904 hybrid contribution 0.493 0.772 -0.060 0.918 sum -25.892 -7.958 2.443 27.198 Atomic orbital electron populations 1.21766 0.94188 1.02101 1.02225 1.21502 0.96063 1.00270 0.94771 0.90591 1.21629 0.95633 1.00745 0.97436 1.22033 0.95670 1.01582 0.98194 1.23004 1.03602 0.96449 0.82305 1.47947 1.06668 1.58904 1.18061 1.20177 0.87787 0.80031 0.82852 1.90750 1.75019 1.38231 1.36003 1.20064 0.87347 0.81528 0.82458 1.90501 1.75741 1.36869 1.36085 1.45909 1.09033 1.48022 1.31131 1.21739 0.77493 1.00438 1.00323 1.22262 0.97013 0.96231 0.96860 0.90473 1.22544 0.98193 0.93468 1.01050 1.23146 0.96314 1.01550 0.97612 1.20798 0.89666 0.90285 0.92872 0.93299 1.42547 1.25326 1.61742 1.06559 1.19306 0.99813 1.23675 0.94085 0.91155 1.24740 0.99370 1.01464 0.95518 1.69672 1.38159 1.50305 0.99981 0.86143 0.82989 0.79869 0.77349 1.20591 1.21957 1.21926 1.22464 0.92212 0.98944 1.02298 1.21812 0.78574 1.01144 0.99485 0.92432 0.92163 0.92307 0.91590 0.91701 0.91509 0.90350 0.91311 0.84031 0.75135 0.90212 0.90893 0.92771 0.91272 0.90910 0.93275 0.78282 0.93606 0.90832 0.91928 0.88795 0.91012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.74 9.20 37.16 0.34 -0.40 16 2 C -0.11 -0.72 2.87 -90.50 -0.26 -0.98 16 3 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 4 C -0.12 -0.72 5.17 -26.69 -0.14 -0.86 16 5 C -0.14 -1.01 6.10 -26.39 -0.16 -1.17 16 6 C 0.07 0.61 6.01 -3.49 -0.02 0.59 16 7 N -0.58 -5.87 2.97 -173.02 -0.51 -6.38 16 8 C 0.51 6.18 7.73 -11.59 -0.09 6.09 16 9 O -0.52 -7.24 15.93 5.50 0.09 -7.15 16 10 C 0.51 6.34 7.74 -11.59 -0.09 6.25 16 11 O -0.51 -7.16 13.18 5.50 0.07 -7.08 16 12 N -0.69 -8.02 5.41 -60.73 -0.33 -8.35 16 13 C 0.12 1.51 4.96 -4.04 -0.02 1.49 16 14 C -0.10 -1.33 2.90 -88.96 -0.26 -1.58 16 15 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 16 C -0.11 -1.65 6.11 -24.66 -0.15 -1.80 16 17 C -0.15 -2.48 6.54 -24.99 -0.16 -2.64 16 18 C 0.17 3.32 3.56 -66.82 -0.24 3.08 16 19 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 20 N -0.72 -17.59 5.08 -52.35 -0.27 -17.86 16 21 C -0.24 -6.51 9.96 -15.06 -0.15 -6.66 16 22 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 23 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 24 N -0.93 -28.03 13.06 55.49 0.72 -27.30 16 25 Si 0.91 22.35 29.55 -169.99 -5.02 17.32 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 28 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 29 C -0.12 -1.85 6.14 -25.61 -0.16 -2.00 16 30 C 0.11 0.91 5.72 -3.71 -0.02 0.89 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.14 1.56 4.30 -54.84 -0.24 1.33 16 40 H 0.41 4.41 7.87 -40.82 -0.32 4.09 16 41 H 0.08 1.10 8.06 -51.93 -0.42 0.68 16 42 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.07 1.11 8.00 -51.93 -0.42 0.70 16 45 H 0.07 1.44 8.04 -51.93 -0.42 1.02 16 46 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.38 9.97 7.52 -40.82 -0.31 9.66 16 48 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 49 H 0.07 1.22 7.31 -51.93 -0.38 0.84 16 50 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 51 H 0.09 0.86 7.01 -51.93 -0.36 0.49 16 52 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 407.16 15.07 6.14 6.14 Total: -1.00 -31.13 407.16 -9.95 -41.08 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -9.17 Total: 9.83 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -1.67 Total: -0.24 kcal Atomic # 7 Polarization: -59.51 SS G_CDS: -0.38 Total: -59.89 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: 0.16 Total: -14.23 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -31.13 -9.95 -41.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656354130.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.524 kcal (2) G-P(sol) polarization free energy of solvation -31.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds