Wall clock time and date at job start Tue Mar 31 2020 20:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47016 * 2 1 4 4 O 1.21276 * 119.99997 * 0.02562 * 3 2 1 5 5 N 1.34782 * 119.99665 * 179.97438 * 3 2 1 6 6 C 1.46503 * 119.99788 * 180.02562 * 5 3 2 7 7 H 1.09002 * 112.91099 * 26.93913 * 6 5 3 8 8 C 1.53511 * 113.69118 * 255.49345 * 6 5 3 9 9 H 1.08995 * 112.30863 * 332.08761 * 8 6 5 10 10 C 1.51671 * 114.24979 * 100.88962 * 8 6 5 11 11 C 1.52730 * 111.06676 * 64.48054 * 10 8 6 12 12 C 1.53150 * 108.68271 * 54.59281 * 11 10 8 13 13 N 1.46342 * 108.98076 * 292.73975 * 12 11 10 14 14 C 1.46904 * 111.00042 * 184.84448 * 13 12 11 15 15 C 1.50706 * 109.46676 * 66.04979 * 14 13 12 16 16 O 1.21288 * 120.00284 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99730 * 179.97438 * 15 14 13 18 18 C 1.37095 * 119.99910 * 179.97438 * 17 15 14 19 19 H 1.08005 * 119.99959 * 0.02562 * 18 17 15 20 20 C 1.38950 * 120.00053 * 180.02562 * 18 17 15 21 21 N 1.31413 * 119.99930 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99918 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47057 * 179.97438 * 22 20 18 24 24 H 1.48500 * 109.47389 * 300.00155 * 22 20 18 25 25 H 1.48504 * 109.47102 * 60.00503 * 22 20 18 26 26 C 1.45793 * 113.31928 * 59.15530 * 13 12 11 27 27 H 1.08998 * 112.38486 * 93.59993 * 26 13 12 28 28 C 1.53874 * 113.78564 * 158.48371 * 6 5 3 29 29 C 1.52996 * 113.64696 * 254.40128 * 28 6 5 30 30 C 1.52999 * 113.65233 * 25.42105 * 28 6 5 31 31 H 1.09005 * 109.46892 * 60.00074 * 1 2 3 32 32 H 1.08997 * 109.47246 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47100 * 299.99620 * 1 2 3 34 34 H 1.09000 * 109.47100 * 240.00380 * 2 1 3 35 35 H 1.08997 * 109.47188 * 120.00461 * 2 1 3 36 36 H 0.96999 * 120.00009 * 359.97438 * 5 3 2 37 37 H 1.08998 * 109.15895 * 304.07277 * 10 8 6 38 38 H 1.09000 * 109.16130 * 184.88727 * 10 8 6 39 39 H 1.08993 * 109.60162 * 294.82726 * 11 10 8 40 40 H 1.09001 * 109.73412 * 174.42886 * 11 10 8 41 41 H 1.09002 * 109.54901 * 172.89454 * 12 11 10 42 42 H 1.08990 * 109.55355 * 52.59659 * 12 11 10 43 43 H 1.08996 * 109.47230 * 306.05527 * 14 13 12 44 44 H 1.09002 * 109.47146 * 186.04759 * 14 13 12 45 45 H 0.96996 * 119.99887 * 0.02562 * 17 15 14 46 46 H 0.97001 * 119.99781 * 359.97438 * 21 20 18 47 47 H 1.09004 * 109.46983 * 79.50801 * 29 28 6 48 48 H 1.09004 * 109.47236 * 199.50544 * 29 28 6 49 49 H 1.09004 * 109.47710 * 319.50838 * 29 28 6 50 50 H 1.08992 * 109.47039 * 40.49737 * 30 28 6 51 51 H 1.08999 * 109.46745 * 160.49916 * 30 28 6 52 52 H 1.08996 * 109.47029 * 280.49444 * 30 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6670 0.0005 6 6 3.8458 3.0483 0.0011 7 1 3.1432 3.7466 0.4559 8 6 4.3838 3.5128 -1.3595 9 1 4.7723 2.6866 -1.9548 10 6 3.4177 4.3740 -2.1504 11 6 3.1430 5.6931 -1.4313 12 6 4.4798 6.3839 -1.1460 13 7 5.2240 5.5937 -0.1645 14 6 6.4647 6.2752 0.2283 15 6 6.1281 7.5432 0.9699 16 8 4.9688 7.8489 1.1536 17 7 7.1153 8.3371 1.4300 18 6 6.8091 9.4909 2.1042 19 1 5.7767 9.7635 2.2670 20 6 7.8268 10.3096 2.5781 21 7 9.0829 9.9782 2.3796 22 14 7.4096 11.8813 3.4973 23 1 8.6637 12.5700 3.8951 24 1 6.6125 12.7729 2.6171 25 1 6.6209 11.5503 4.7113 26 6 5.4940 4.2307 -0.6061 27 1 6.4667 4.1357 -1.0885 28 6 5.2875 3.1966 0.5180 29 6 5.3769 3.7927 1.9243 30 6 6.1324 1.9320 0.3515 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 3.9877 0.9297 0.0013 37 1 2.4795 3.8341 -2.2781 38 1 3.8453 4.5833 -3.1309 39 1 2.6250 5.4970 -0.4927 40 1 2.5272 6.3346 -2.0617 41 1 4.2969 7.3820 -0.7477 42 1 5.0564 6.4576 -2.0680 43 1 7.0436 6.5182 -0.6627 44 1 7.0497 5.6208 0.8745 45 1 8.0424 8.0924 1.2835 46 1 9.2995 9.1618 1.9026 47 1 5.1648 3.0182 2.6614 48 1 6.3800 4.1862 2.0890 49 1 4.6496 4.5984 2.0244 50 1 5.9174 1.4761 -0.6148 51 1 7.1896 2.1920 0.4035 52 1 5.8921 1.2271 1.1474 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656647170.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:44 Heat of formation + Delta-G solvation = -56.034513 kcal Electronic energy + Delta-G solvation = -31272.202800 eV Core-core repulsion = 27271.840843 eV Total energy + Delta-G solvation = -4000.361957 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.45512 -39.36382 -38.26342 -35.91298 -34.27605 -33.77148 -33.25107 -32.63275 -31.04362 -29.99078 -27.54641 -27.43192 -26.17642 -24.66430 -23.73508 -23.06700 -22.13193 -20.40615 -19.60110 -19.40227 -18.21274 -17.86920 -17.15334 -16.58487 -16.04620 -15.77855 -15.33970 -15.05528 -14.71764 -14.50848 -14.38153 -14.03025 -13.94247 -13.75089 -13.51720 -13.32488 -13.07702 -12.98180 -12.67137 -12.64699 -12.28611 -12.14126 -12.04314 -11.98125 -11.57865 -11.48183 -11.39883 -11.18880 -11.07830 -10.93346 -10.87343 -10.58201 -10.47130 -10.31436 -10.19058 -9.90188 -9.83600 -9.81224 -9.46089 -8.91243 -8.39993 -8.00434 -7.76747 -6.72311 -3.85132 2.54315 3.10775 3.33142 3.36641 3.56677 3.82024 3.88542 4.28191 4.34213 4.43191 4.53331 4.61274 4.80351 4.82794 4.86766 4.96771 5.08732 5.10455 5.24057 5.26938 5.29028 5.38965 5.40651 5.50684 5.52605 5.54621 5.64554 5.66746 5.73976 5.76405 5.79818 5.89162 5.91639 5.96663 5.99049 6.04311 6.07022 6.09126 6.15829 6.25870 6.30636 6.50400 6.55841 6.62846 6.71293 7.32354 7.41639 7.54502 7.84710 8.11337 8.15746 8.63873 8.84381 9.51264 9.92811 10.71194 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019937 B = 0.002651 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.060971 B =10559.748618 C =10722.044941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.146 4.146 3 C 0.507 3.493 4 O -0.536 6.536 5 N -0.722 5.722 6 C 0.144 3.856 7 H 0.123 0.877 8 C -0.112 4.112 9 H 0.087 0.913 10 C -0.106 4.106 11 C -0.113 4.113 12 C 0.060 3.940 13 N -0.501 5.501 14 C 0.051 3.949 15 C 0.448 3.552 16 O -0.568 6.568 17 N -0.578 5.578 18 C -0.379 4.379 19 H 0.099 0.901 20 C -0.010 4.010 21 N -0.903 5.903 22 Si 1.090 2.910 23 H -0.280 1.280 24 H -0.284 1.284 25 H -0.284 1.284 26 C 0.082 3.918 27 H 0.053 0.947 28 C -0.087 4.087 29 C -0.124 4.124 30 C -0.133 4.133 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.397 0.603 37 H 0.064 0.936 38 H 0.054 0.946 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.104 0.896 42 H 0.020 0.980 43 H 0.044 0.956 44 H 0.087 0.913 45 H 0.374 0.626 46 H 0.260 0.740 47 H 0.043 0.957 48 H 0.053 0.947 49 H 0.078 0.922 50 H 0.055 0.945 51 H 0.063 0.937 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.814 -22.087 -8.049 24.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.186 4.186 3 C 0.294 3.706 4 O -0.412 6.412 5 N -0.373 5.373 6 C 0.039 3.961 7 H 0.141 0.859 8 C -0.132 4.132 9 H 0.105 0.895 10 C -0.143 4.143 11 C -0.150 4.150 12 C -0.067 4.067 13 N -0.225 5.225 14 C -0.081 4.081 15 C 0.234 3.766 16 O -0.451 6.451 17 N -0.216 5.216 18 C -0.508 4.508 19 H 0.116 0.884 20 C -0.213 4.213 21 N -0.542 5.542 22 Si 0.916 3.084 23 H -0.205 1.205 24 H -0.211 1.211 25 H -0.210 1.210 26 C -0.028 4.028 27 H 0.071 0.929 28 C -0.089 4.089 29 C -0.181 4.181 30 C -0.191 4.191 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.232 0.768 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.122 0.878 42 H 0.038 0.962 43 H 0.062 0.938 44 H 0.106 0.894 45 H 0.207 0.793 46 H 0.072 0.928 47 H 0.062 0.938 48 H 0.072 0.928 49 H 0.097 0.903 50 H 0.074 0.926 51 H 0.082 0.918 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.817 -19.896 -6.748 22.417 hybrid contribution 0.965 -1.955 -1.654 2.737 sum -6.852 -21.851 -8.403 24.393 Atomic orbital electron populations 1.21520 0.93068 1.01395 1.03475 1.21647 0.98736 0.94158 1.04033 1.20799 0.82425 0.91706 0.75719 1.90724 1.55225 1.46481 1.48754 1.46148 1.06941 1.08977 1.75281 1.22752 0.94768 0.82690 0.95846 0.85905 1.22486 0.96182 0.98272 0.96243 0.89501 1.21031 0.98762 0.96472 0.98081 1.21500 0.97182 0.95355 1.01003 1.22133 0.93348 0.99154 0.92086 1.60142 1.20381 0.99860 1.42111 1.21877 0.91160 0.95973 0.99047 1.19653 0.86292 0.85665 0.84996 1.90499 1.19230 1.74320 1.61008 1.41941 1.07101 1.21635 1.50964 1.20508 0.97088 0.99226 1.34013 0.88359 1.26475 0.92333 1.03973 0.98482 1.70903 1.17933 1.25464 1.39931 0.83145 0.75574 0.73711 0.75931 1.20476 1.21057 1.21024 1.22018 0.96840 0.88984 0.94918 0.92878 1.22404 0.94438 0.95205 0.96828 1.21574 1.02881 1.00572 0.93120 1.21606 1.00044 0.96201 1.01216 0.91997 0.92265 0.91910 0.89215 0.89128 0.76823 0.91751 0.92691 0.90650 0.91687 0.87808 0.96229 0.93765 0.89447 0.79285 0.92825 0.93810 0.92809 0.90340 0.92602 0.91756 0.92058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.20 37.16 0.34 -0.73 16 2 C -0.15 -1.02 6.42 -27.88 -0.18 -1.20 16 3 C 0.51 5.58 7.83 -10.98 -0.09 5.50 16 4 O -0.54 -8.34 15.62 5.56 0.09 -8.25 16 5 N -0.72 -6.88 5.27 -53.10 -0.28 -7.16 16 6 C 0.14 1.73 3.02 -67.21 -0.20 1.53 16 7 H 0.12 1.96 6.18 -51.93 -0.32 1.64 16 8 C -0.11 -1.29 3.39 -91.46 -0.31 -1.60 16 9 H 0.09 0.86 7.42 -51.93 -0.39 0.47 16 10 C -0.11 -1.33 5.67 -27.54 -0.16 -1.48 16 11 C -0.11 -1.66 5.89 -26.79 -0.16 -1.82 16 12 C 0.06 0.99 5.10 -4.05 -0.02 0.97 16 13 N -0.50 -8.10 2.88 -229.12 -0.66 -8.76 16 14 C 0.05 0.89 4.98 -4.97 -0.02 0.86 16 15 C 0.45 10.41 7.47 -10.98 -0.08 10.33 16 16 O -0.57 -15.11 13.91 5.55 0.08 -15.04 16 17 N -0.58 -14.45 5.28 -10.96 -0.06 -14.51 16 18 C -0.38 -10.63 9.68 -14.93 -0.14 -10.77 16 19 H 0.10 2.92 7.16 -52.48 -0.38 2.55 16 20 C -0.01 -0.29 5.50 -17.47 -0.10 -0.38 16 21 N -0.90 -25.35 13.68 55.50 0.76 -24.59 16 22 Si 1.09 24.46 29.92 -169.99 -5.09 19.38 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 24 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 26 C 0.08 1.06 2.96 -68.14 -0.20 0.85 16 27 H 0.05 0.65 7.86 -51.93 -0.41 0.24 16 28 C -0.09 -0.98 1.36 -153.47 -0.21 -1.19 16 29 C -0.12 -1.69 8.11 37.16 0.30 -1.39 16 30 C -0.13 -1.08 7.77 37.16 0.29 -0.79 16 31 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 34 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.40 2.63 6.85 -40.82 -0.28 2.35 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.07 1.27 7.02 -51.93 -0.36 0.90 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.10 2.11 5.81 -51.93 -0.30 1.80 16 42 H 0.02 0.31 8.13 -51.93 -0.42 -0.11 16 43 H 0.04 0.72 8.12 -51.93 -0.42 0.30 16 44 H 0.09 1.40 6.47 -51.93 -0.34 1.06 16 45 H 0.37 8.69 6.73 -40.82 -0.27 8.41 16 46 H 0.26 7.02 6.78 -40.82 -0.28 6.75 16 47 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.05 0.75 6.79 -51.93 -0.35 0.40 16 49 H 0.08 1.33 7.48 -51.93 -0.39 0.94 16 50 H 0.05 0.37 6.70 -51.93 -0.35 0.03 16 51 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 52 H 0.06 0.43 8.04 -51.93 -0.42 0.02 16 LS Contribution 397.11 15.07 5.98 5.98 Total: -1.00 -33.44 397.11 -8.81 -42.25 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: -8.69 Total: 12.00 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -0.94 Total: -1.30 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: -0.24 Total: -55.02 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: 0.16 Total: -23.29 kcal Atomic # 14 Polarization: 24.46 SS G_CDS: -5.09 Total: 19.38 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.44 -8.81 -42.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656647170.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.788 kcal (2) G-P(sol) polarization free energy of solvation -33.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds