Wall clock time and date at job start Tue Mar 31 2020 20:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47016 * 2 1 4 4 O 1.21276 * 119.99997 * 0.02562 * 3 2 1 5 5 N 1.34782 * 119.99665 * 179.97438 * 3 2 1 6 6 C 1.46503 * 119.99788 * 180.02562 * 5 3 2 7 7 H 1.09002 * 112.91099 * 26.93913 * 6 5 3 8 8 C 1.53511 * 113.69118 * 255.49345 * 6 5 3 9 9 H 1.08995 * 112.30863 * 332.08761 * 8 6 5 10 10 C 1.51671 * 114.24979 * 100.88962 * 8 6 5 11 11 C 1.52730 * 111.06676 * 64.48054 * 10 8 6 12 12 C 1.53150 * 108.68271 * 54.59281 * 11 10 8 13 13 N 1.46342 * 108.98076 * 292.73975 * 12 11 10 14 14 C 1.46904 * 111.00042 * 184.84448 * 13 12 11 15 15 C 1.50706 * 109.46676 * 66.04979 * 14 13 12 16 16 O 1.21288 * 120.00284 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99730 * 179.97438 * 15 14 13 18 18 C 1.37095 * 119.99910 * 179.97438 * 17 15 14 19 19 H 1.08005 * 119.99959 * 0.02562 * 18 17 15 20 20 C 1.38950 * 120.00053 * 180.02562 * 18 17 15 21 21 N 1.31413 * 119.99930 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99918 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47057 * 179.97438 * 22 20 18 24 24 H 1.48500 * 109.47389 * 300.00155 * 22 20 18 25 25 H 1.48504 * 109.47102 * 60.00503 * 22 20 18 26 26 C 1.45793 * 113.31928 * 59.15530 * 13 12 11 27 27 H 1.08998 * 112.38486 * 93.59993 * 26 13 12 28 28 C 1.53874 * 113.78564 * 158.48371 * 6 5 3 29 29 C 1.52996 * 113.64696 * 254.40128 * 28 6 5 30 30 C 1.52999 * 113.65233 * 25.42105 * 28 6 5 31 31 H 1.09005 * 109.46892 * 60.00074 * 1 2 3 32 32 H 1.08997 * 109.47246 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47100 * 299.99620 * 1 2 3 34 34 H 1.09000 * 109.47100 * 240.00380 * 2 1 3 35 35 H 1.08997 * 109.47188 * 120.00461 * 2 1 3 36 36 H 0.96999 * 120.00009 * 359.97438 * 5 3 2 37 37 H 1.08998 * 109.15895 * 304.07277 * 10 8 6 38 38 H 1.09000 * 109.16130 * 184.88727 * 10 8 6 39 39 H 1.08993 * 109.60162 * 294.82726 * 11 10 8 40 40 H 1.09001 * 109.73412 * 174.42886 * 11 10 8 41 41 H 1.09002 * 109.54901 * 172.89454 * 12 11 10 42 42 H 1.08990 * 109.55355 * 52.59659 * 12 11 10 43 43 H 1.08996 * 109.47230 * 306.05527 * 14 13 12 44 44 H 1.09002 * 109.47146 * 186.04759 * 14 13 12 45 45 H 0.96996 * 119.99887 * 0.02562 * 17 15 14 46 46 H 0.97001 * 119.99781 * 359.97438 * 21 20 18 47 47 H 1.09004 * 109.46983 * 79.50801 * 29 28 6 48 48 H 1.09004 * 109.47236 * 199.50544 * 29 28 6 49 49 H 1.09004 * 109.47710 * 319.50838 * 29 28 6 50 50 H 1.08992 * 109.47039 * 40.49737 * 30 28 6 51 51 H 1.08999 * 109.46745 * 160.49916 * 30 28 6 52 52 H 1.08996 * 109.47029 * 280.49444 * 30 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6670 0.0005 6 6 3.8458 3.0483 0.0011 7 1 3.1432 3.7466 0.4559 8 6 4.3838 3.5128 -1.3595 9 1 4.7723 2.6866 -1.9548 10 6 3.4177 4.3740 -2.1504 11 6 3.1430 5.6931 -1.4313 12 6 4.4798 6.3839 -1.1460 13 7 5.2240 5.5937 -0.1645 14 6 6.4647 6.2752 0.2283 15 6 6.1281 7.5432 0.9699 16 8 4.9688 7.8489 1.1536 17 7 7.1153 8.3371 1.4300 18 6 6.8091 9.4909 2.1042 19 1 5.7767 9.7635 2.2670 20 6 7.8268 10.3096 2.5781 21 7 9.0829 9.9782 2.3796 22 14 7.4096 11.8813 3.4973 23 1 8.6637 12.5700 3.8951 24 1 6.6125 12.7729 2.6171 25 1 6.6209 11.5503 4.7113 26 6 5.4940 4.2307 -0.6061 27 1 6.4667 4.1357 -1.0885 28 6 5.2875 3.1966 0.5180 29 6 5.3769 3.7927 1.9243 30 6 6.1324 1.9320 0.3515 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 3.9877 0.9297 0.0013 37 1 2.4795 3.8341 -2.2781 38 1 3.8453 4.5833 -3.1309 39 1 2.6250 5.4970 -0.4927 40 1 2.5272 6.3346 -2.0617 41 1 4.2969 7.3820 -0.7477 42 1 5.0564 6.4576 -2.0680 43 1 7.0436 6.5182 -0.6627 44 1 7.0497 5.6208 0.8745 45 1 8.0424 8.0924 1.2835 46 1 9.2995 9.1618 1.9026 47 1 5.1648 3.0182 2.6614 48 1 6.3800 4.1862 2.0890 49 1 4.6496 4.5984 2.0244 50 1 5.9174 1.4761 -0.6148 51 1 7.1896 2.1920 0.4035 52 1 5.8921 1.2271 1.1474 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656647170.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:43 Heat of formation + Delta-G solvation = -79.510622 kcal Electronic energy + Delta-G solvation = -31273.220801 eV Core-core repulsion = 27271.840843 eV Total energy + Delta-G solvation = -4001.379957 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.47650 -40.48957 -39.93296 -37.20786 -36.20815 -34.90479 -34.26238 -33.37753 -33.08109 -31.03237 -28.98029 -28.36471 -27.17480 -26.31622 -24.93765 -24.19720 -23.26189 -21.46150 -21.22863 -20.42645 -19.95293 -19.22741 -18.16597 -17.72857 -17.58247 -16.72769 -16.60219 -16.41625 -16.17702 -15.72211 -15.51561 -15.47232 -15.31825 -15.05046 -14.82074 -14.34806 -14.30007 -14.00181 -13.82770 -13.56267 -13.34177 -13.33426 -13.08397 -13.02206 -12.91997 -12.65011 -12.61288 -12.54356 -12.11182 -12.02065 -12.00574 -11.93136 -11.88381 -11.68679 -11.61267 -11.48362 -11.36315 -10.93194 -10.76505 -10.25453 -10.07743 -9.80960 -9.06949 -8.91426 -6.04632 1.52164 1.53147 1.71953 1.81092 2.02926 2.32686 2.37480 2.62208 3.16368 3.17751 3.36279 3.51312 3.64334 3.83224 3.87669 4.01961 4.05294 4.20166 4.24801 4.27645 4.28870 4.30153 4.35929 4.41834 4.44517 4.52218 4.67514 4.68941 4.76621 4.80277 4.87057 4.96691 4.98549 5.02061 5.02530 5.04754 5.07993 5.10484 5.18383 5.29977 5.31596 5.35045 5.45765 5.51566 5.60285 5.69485 5.96789 6.05226 6.35787 6.60353 6.67360 6.78095 7.39049 7.46562 7.97055 8.56454 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019937 B = 0.002651 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.060971 B =10559.748618 C =10722.044941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.136 4.136 3 C 0.499 3.501 4 O -0.592 6.592 5 N -0.706 5.706 6 C 0.143 3.857 7 H 0.075 0.925 8 C -0.103 4.103 9 H 0.122 0.878 10 C -0.099 4.099 11 C -0.107 4.107 12 C 0.065 3.935 13 N -0.518 5.518 14 C 0.065 3.935 15 C 0.448 3.552 16 O -0.607 6.607 17 N -0.589 5.589 18 C -0.405 4.405 19 H 0.070 0.930 20 C -0.043 4.043 21 N -0.918 5.918 22 Si 1.131 2.869 23 H -0.271 1.271 24 H -0.274 1.274 25 H -0.275 1.275 26 C 0.074 3.926 27 H 0.075 0.925 28 C -0.075 4.075 29 C -0.120 4.120 30 C -0.129 4.129 31 H 0.043 0.957 32 H 0.086 0.914 33 H 0.039 0.961 34 H 0.122 0.878 35 H 0.116 0.884 36 H 0.416 0.584 37 H 0.059 0.941 38 H 0.074 0.926 39 H 0.043 0.957 40 H 0.069 0.931 41 H 0.058 0.942 42 H 0.035 0.965 43 H 0.066 0.934 44 H 0.109 0.891 45 H 0.383 0.617 46 H 0.259 0.741 47 H 0.056 0.944 48 H 0.049 0.951 49 H 0.033 0.967 50 H 0.080 0.920 51 H 0.070 0.930 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.182 -25.557 -9.408 27.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.176 4.176 3 C 0.287 3.713 4 O -0.472 6.472 5 N -0.359 5.359 6 C 0.037 3.963 7 H 0.093 0.907 8 C -0.123 4.123 9 H 0.140 0.860 10 C -0.137 4.137 11 C -0.144 4.144 12 C -0.062 4.062 13 N -0.242 5.242 14 C -0.066 4.066 15 C 0.235 3.765 16 O -0.491 6.491 17 N -0.229 5.229 18 C -0.535 4.535 19 H 0.088 0.912 20 C -0.241 4.241 21 N -0.557 5.557 22 Si 0.952 3.048 23 H -0.196 1.196 24 H -0.200 1.200 25 H -0.200 1.200 26 C -0.036 4.036 27 H 0.093 0.907 28 C -0.077 4.077 29 C -0.178 4.178 30 C -0.186 4.186 31 H 0.062 0.938 32 H 0.105 0.895 33 H 0.058 0.942 34 H 0.140 0.860 35 H 0.135 0.865 36 H 0.255 0.745 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.061 0.939 40 H 0.088 0.912 41 H 0.076 0.924 42 H 0.053 0.947 43 H 0.084 0.916 44 H 0.127 0.873 45 H 0.217 0.783 46 H 0.070 0.930 47 H 0.075 0.925 48 H 0.068 0.932 49 H 0.052 0.948 50 H 0.099 0.901 51 H 0.089 0.911 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.144 -23.435 -8.124 25.553 hybrid contribution 0.357 -0.906 -1.216 1.558 sum -5.787 -24.341 -9.340 26.706 Atomic orbital electron populations 1.21535 0.94092 1.02474 1.01538 1.21696 0.97749 0.91396 1.06718 1.21642 0.82306 0.92957 0.74373 1.90715 1.56650 1.48555 1.51328 1.45979 1.07034 1.08458 1.74386 1.22377 0.94230 0.83307 0.96340 0.90736 1.22537 0.95204 0.98631 0.95886 0.85991 1.20964 0.99105 0.94883 0.98714 1.21408 0.96028 0.97066 0.99943 1.21930 0.94601 0.97308 0.92348 1.60027 1.19841 1.01424 1.42904 1.21721 0.92152 0.93302 0.99378 1.20759 0.85322 0.86714 0.83667 1.90488 1.21038 1.75542 1.62070 1.41983 1.07920 1.21482 1.51516 1.20457 0.96113 1.01111 1.35787 0.91184 1.27749 0.91730 1.06182 0.98430 1.70969 1.18287 1.25814 1.40645 0.82654 0.75898 0.70862 0.75430 1.19606 1.19955 1.20029 1.22178 0.98277 0.86879 0.96218 0.90693 1.22424 0.94424 0.96293 0.94552 1.21488 1.01074 0.99686 0.95544 1.21631 0.99470 0.94293 1.03211 0.93754 0.89534 0.94169 0.86026 0.86542 0.74519 0.92272 0.90735 0.93863 0.91205 0.92406 0.94706 0.91644 0.87324 0.78267 0.93005 0.92549 0.93209 0.94805 0.90147 0.91144 0.90577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.20 71.98 0.66 -1.33 16 2 C -0.14 -1.49 6.42 29.85 0.19 -1.30 16 3 C 0.50 10.37 7.83 87.66 0.69 11.06 16 4 O -0.59 -19.16 15.62 -3.02 -0.05 -19.21 16 5 N -0.71 -11.72 5.27 -440.31 -2.32 -14.04 16 6 C 0.14 3.31 3.02 45.46 0.14 3.44 16 7 H 0.07 2.54 6.18 -2.39 -0.01 2.52 16 8 C -0.10 -2.10 3.39 -11.34 -0.04 -2.14 16 9 H 0.12 1.74 7.42 -2.39 -0.02 1.72 16 10 C -0.10 -2.36 5.67 30.07 0.17 -2.19 16 11 C -0.11 -3.29 5.89 30.55 0.18 -3.11 16 12 C 0.07 2.25 5.10 86.46 0.44 2.69 16 13 N -0.52 -16.83 2.88 -878.80 -2.53 -19.36 16 14 C 0.07 2.27 4.98 85.56 0.43 2.70 16 15 C 0.45 21.59 7.47 87.66 0.65 22.24 16 16 O -0.61 -34.37 13.91 -3.05 -0.04 -34.41 16 17 N -0.59 -30.38 5.28 -306.98 -1.62 -32.00 16 18 C -0.41 -23.56 9.68 84.04 0.81 -22.74 16 19 H 0.07 4.40 7.16 -2.91 -0.02 4.38 16 20 C -0.04 -2.36 5.50 84.93 0.47 -1.90 16 21 N -0.92 -51.71 13.68 21.66 0.30 -51.41 16 22 Si 1.13 49.63 29.92 68.60 2.05 51.68 16 23 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 24 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 25 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 26 C 0.07 1.72 2.96 45.23 0.13 1.85 16 27 H 0.08 1.50 7.86 -2.39 -0.02 1.48 16 28 C -0.08 -1.54 1.36 -51.51 -0.07 -1.61 16 29 C -0.12 -3.25 8.11 71.98 0.58 -2.67 16 30 C -0.13 -1.47 7.77 71.98 0.56 -0.92 16 31 H 0.04 0.78 8.10 -2.38 -0.02 0.76 16 32 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.04 0.74 8.10 -2.39 -0.02 0.72 16 34 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.42 3.64 6.85 -92.71 -0.63 3.01 16 37 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.04 1.60 7.02 -2.39 -0.02 1.58 16 40 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.06 2.52 5.81 -2.39 -0.01 2.51 16 42 H 0.03 1.07 8.13 -2.39 -0.02 1.05 16 43 H 0.07 2.03 8.12 -2.39 -0.02 2.01 16 44 H 0.11 3.33 6.47 -2.39 -0.02 3.31 16 45 H 0.38 18.11 6.73 -92.71 -0.62 17.48 16 46 H 0.26 14.08 6.78 -92.71 -0.63 13.45 16 47 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 48 H 0.05 1.35 6.79 -2.38 -0.02 1.34 16 49 H 0.03 1.20 7.48 -2.38 -0.02 1.19 16 50 H 0.08 0.57 6.70 -2.39 -0.02 0.56 16 51 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 52 H 0.08 0.69 8.04 -2.39 -0.02 0.68 16 Total: -1.00 -79.81 397.11 1.60 -78.21 By element: Atomic # 1 Polarization: 36.66 SS G_CDS: -0.19 Total: 36.48 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: 6.00 Total: 4.07 kcal Atomic # 7 Polarization: -110.64 SS G_CDS: -6.18 Total: -116.82 kcal Atomic # 8 Polarization: -53.53 SS G_CDS: -0.09 Total: -53.62 kcal Atomic # 14 Polarization: 49.63 SS G_CDS: 2.05 Total: 51.68 kcal Total: -79.81 1.60 -78.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656647170.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.302 kcal (2) G-P(sol) polarization free energy of solvation -79.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds